genome.fa.s5.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  98  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36171735--36171805	34	2.2	32	79	13	83	59	4	12	23	1.51
36177619--36177666	23	2.1	23	92	0	78	37	18	16	27	1.92
36190381--36190410	2	15.0	2	92	0	51	0	46	0	53	1.00
36191467--36191497	15	2.1	15	93	0	53	67	0	22	9	1.19
36192632--36192656	13	1.9	13	100	0	50	72	0	0	28	0.86
36200169--36200202	16	2.2	16	89	5	52	8	2	14	73	1.19
36203134--36203163	10	3.0	10	90	0	51	86	0	0	13	0.57
36204516--36204562	19	2.5	20	80	16	55	78	0	6	14	0.93
36205944--36206013	35	2.0	35	86	10	99	48	17	12	21	1.80
36207955--36208038	6	14.0	6	80	5	80	3	7	63	26	1.37
36207955--36208035	12	6.8	12	79	0	90	3	7	62	25	1.38
36209852--36209894	21	2.0	21	90	0	68	16	27	30	25	1.97
36212580--36212612	16	2.1	16	88	11	50	24	0	0	75	0.80
36213928--36213971	2	22.5	2	81	4	54	45	0	2	52	1.13
36213928--36213980	27	2.0	27	96	0	97	41	0	3	54	1.18
36228116--36228171	28	2.0	28	100	0	112	28	28	14	28	1.95
36233538--36233573	2	18.0	2	100	0	72	50	0	0	50	1.00
36239686--36239710	13	1.9	13	100	0	50	28	16	8	48	1.74
36244092--36244132	2	20.5	2	100	0	82	51	0	0	48	1.00
36244165--36244197	2	17.5	2	87	12	52	51	0	0	48	1.00
36245812--36245836	11	2.3	11	100	0	50	92	0	8	0	0.40
36245773--36245829	29	2.0	29	82	6	71	78	3	1	15	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36246990--36247084	2	47.5	2	100	0	190	50	0	0	49	1.00
36247354--36247408	21	2.5	21	77	16	58	60	3	10	25	1.47
36248292--36248319	2	14.0	2	100	0	56	50	0	0	50	1.00
36249226--36249254	15	1.9	15	100	0	58	44	27	6	20	1.77
36257034--36257094	31	2.0	31	87	6	88	39	11	21	27	1.88
36257037--36257106	31	2.3	30	80	7	79	38	14	17	30	1.89
36257415--36257440	8	3.2	8	100	0	52	73	0	0	26	0.84
36257543--36257623	35	2.3	35	80	6	92	61	7	0	30	1.23
36260011--36260046	2	18.5	2	94	5	65	50	0	0	50	1.00
36259998--36260046	23	2.0	25	88	7	75	46	4	0	48	1.20
36260143--36260195	2	27.5	2	85	14	76	50	0	1	47	1.12
36260143--36260191	25	2.0	25	92	8	82	51	0	2	46	1.12
36261267--36261311	11	4.1	11	91	0	63	28	20	20	31	1.97
36262735--36262761	8	3.4	8	100	0	54	0	0	11	88	0.50
36270204--36270367	61	2.7	62	80	5	190	36	12	16	34	1.86
36280340--36280380	3	13.7	3	89	0	64	0	60	0	39	0.96
36280714--36280844	62	2.1	62	95	0	244	40	6	16	36	1.75
36285461--36285588	32	3.8	34	71	12	104	28	10	25	35	1.89
36285438--36285603	32	4.9	32	69	13	93	27	13	24	34	1.92
36285438--36285615	67	2.6	66	87	5	250	27	12	24	35	1.91
36286683--36286802	59	2.0	59	91	0	195	11	23	15	50	1.76
36292885--36293128	123	2.0	122	80	11	275	56	6	10	27	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36294967--36295029	30	2.1	30	100	0	126	58	0	23	17	1.38
36298481--36298519	16	2.3	17	86	8	53	58	2	7	30	1.39
36310801--36311086	143	2.0	140	97	2	545	37	13	8	39	1.76
36313415--36313459	3	14.0	3	88	9	63	64	0	2	33	1.06
36313706--36313748	21	2.0	22	82	13	54	74	2	23	0	0.93
36316295--36316336	20	2.1	20	90	0	66	47	2	4	45	1.36
36317897--36317979	30	2.9	28	81	10	87	36	1	3	59	1.23
36317925--36317990	30	2.2	30	91	0	105	37	1	4	56	1.29
36328918--36328951	2	17.0	2	100	0	68	50	0	0	50	1.00
36366596--36366638	2	21.5	2	100	0	86	0	51	0	48	1.00
36368603--36368636	2	17.0	2	87	0	50	50	0	50	0	1.00
36385765--36385791	3	9.0	3	100	0	54	66	0	0	33	0.92
36403176--36403203	2	14.0	2	100	0	56	0	50	0	50	1.00
36412401--36412459	29	2.0	29	100	0	118	37	11	16	33	1.86
36412448--36412479	16	2.0	16	100	0	64	43	18	12	25	1.85
36418813--36418856	2	22.0	2	100	0	88	50	0	0	50	1.00
36425771--36425796	2	13.0	2	100	0	52	0	50	0	50	1.00
36427812--36427853	2	21.0	2	100	0	84	0	50	0	50	1.00
36429113--36429169	18	3.1	18	79	18	64	8	15	0	75	1.04
36429115--36429165	17	2.9	17	78	13	59	5	15	0	78	0.93
36429104--36429165	13	3.9	16	72	25	51	6	14	0	79	0.93
36432091--36432121	16	2.0	16	93	6	55	35	12	6	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36432252--36432349	29	3.3	30	75	2	81	53	5	6	35	1.48
36432906--36432949	20	2.1	21	80	16	56	38	0	0	61	0.96
36440544--36440575	16	2.0	16	93	0	55	46	3	31	18	1.65
36440947--36440979	16	2.1	16	94	0	57	66	6	0	27	1.15
36444079--36444202	66	1.9	66	93	0	212	31	25	16	27	1.96
36447441--36447466	13	2.0	13	100	0	52	53	0	23	23	1.46
36453853--36453885	16	2.0	17	94	5	59	0	12	3	84	0.72
36461278--36461309	3	10.7	3	93	0	55	3	0	65	31	1.08
36482509--36482536	3	9.3	3	100	0	56	32	0	0	67	0.91
36486122--36486147	3	8.7	3	100	0	52	69	0	0	30	0.89
36489300--36489353	22	2.5	22	100	0	108	38	7	12	40	1.72
36512597--36512632	12	2.8	12	91	8	54	0	27	0	72	0.85
36512654--36512719	24	2.8	23	73	13	64	6	27	0	66	1.15
36512975--36513021	22	2.1	23	88	11	71	17	8	2	72	1.19
36512965--36513024	17	3.4	17	76	19	52	20	10	1	68	1.27
36513595--36513671	27	3.3	22	70	16	66	41	0	2	55	1.13
36513598--36513654	27	2.2	26	87	6	80	43	0	3	52	1.18
36513623--36513719	41	2.3	41	81	11	101	42	4	3	50	1.37
36513712--36513773	20	3.2	19	78	13	56	32	0	3	62	1.11
36513799--36514052	26	10.1	25	68	24	128	44	1	3	51	1.26
36513789--36513814	7	3.7	7	100	0	52	38	0	0	61	0.96
36513786--36514074	101	2.8	101	94	3	483	43	1	3	52	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36513857--36514015	74	2.1	74	81	11	182	41	1	3	52	1.30
36513941--36514201	141	1.9	133	84	6	342	42	1	3	52	1.27
36516691--36516741	15	3.1	15	75	24	57	9	15	5	68	1.36
36525430--36525491	27	2.3	27	80	0	79	33	11	20	33	1.89
36525514--36525611	34	2.9	34	82	0	106	17	13	27	41	1.86
36527815--36527883	22	3.1	22	74	12	77	33	8	8	49	1.64
36528109--36528146	2	19.0	2	100	0	76	50	0	0	50	1.00
36528731--36528776	23	2.0	23	95	0	83	17	6	13	63	1.50
36532944--36532970	14	1.9	14	100	0	54	59	11	0	29	1.32
36535453--36535486	14	2.5	13	86	9	50	73	0	2	23	0.97
36542988--36543537	235	2.3	237	88	0	816	37	11	14	36	1.83
36547980--36548047	34	2.0	34	94	0	118	36	16	13	33	1.87
36550801--36550866	21	3.1	21	91	0	105	36	30	18	15	1.91
36551993--36552049	9	5.9	9	75	20	53	15	1	0	82	0.75
36552010--36552073	22	2.8	24	79	15	82	25	0	1	73	0.92
36552009--36552075	11	5.8	13	68	28	53	23	0	1	74	0.90
36553330--36553382	20	2.7	19	79	5	52	71	3	16	7	1.24
36557138--36557226	45	2.0	45	93	0	151	19	8	25	46	1.79
36557415--36558198	398	2.0	398	93	1	1340	32	24	13	29	1.94
36578608--36578641	8	4.1	8	88	7	50	0	23	0	76	0.79
36579095--36579153	30	2.0	30	83	6	75	23	0	3	72	0.99
36580413--36580465	20	2.7	19	79	5	52	71	3	16	7	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36584190--36584280	45	2.0	45	82	4	112	23	14	20	41	1.89
36594192--36594272	39	2.1	39	100	0	162	45	6	23	24	1.75
36609019--36609102	42	2.0	42	92	0	141	17	22	27	32	1.97
36609040--36609102	18	3.2	18	68	23	54	20	23	26	28	1.99
36609029--36609113	42	2.0	42	86	0	116	20	24	25	29	1.99
36613139--36613194	7	7.7	7	73	15	51	5	17	0	76	0.96
36613073--36613192	22	5.2	23	72	13	95	9	20	1	69	1.25
36614988--36615144	84	1.9	84	85	2	217	36	10	36	15	1.82
36621592--36621810	109	2.0	109	99	0	429	31	23	21	24	1.98
36623437--36623511	29	2.6	29	77	10	80	53	5	5	36	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103