genome.fa.s5.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  20  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7316598--7316730	43	3.1	43	79	5	137	26	17	31	24	1.97
7323477--7323537	17	3.8	17	72	20	51	72	0	27	0	0.85
7323509--7323626	48	2.4	49	78	9	127	56	4	34	4	1.38
7323553--7323707	60	2.5	63	82	8	185	58	3	36	1	1.28
7323786--7323824	15	2.6	16	84	12	55	69	0	0	30	0.89
7323784--7323818	18	1.9	18	94	0	61	71	0	0	28	0.86
7324350--7324585	58	4.0	58	90	2	303	25	19	33	22	1.97
7340076--7340102	12	2.2	12	100	0	54	37	0	0	62	0.95
7348123--7348244	42	2.9	41	87	2	172	22	21	30	26	1.99
7348123--7348288	84	2.0	85	85	3	228	22	19	31	25	1.98
7349169--7349217	19	2.5	20	76	6	55	20	4	6	69	1.27
7354458--7354701	35	6.9	35	83	4	215	43	13	6	36	1.69
7354481--7354701	107	2.1	107	83	3	263	44	12	6	36	1.68
7354481--7354694	35	6.1	35	85	3	245	44	12	6	36	1.69
7359581--7359908	179	1.8	180	91	0	541	34	14	13	37	1.86
7361058--7361201	36	4.0	36	88	0	209	45	15	6	33	1.71
7364075--7364117	21	2.0	21	100	0	86	37	0	4	58	1.19
7370670--7370694	13	1.9	13	100	0	50	44	0	8	48	1.32
7376568--7376630	22	2.9	22	95	0	108	28	4	23	42	1.74
7381845--7381904	30	2.1	29	81	6	68	31	8	21	38	1.83
7385664--7385782	44	2.7	43	84	5	141	22	34	17	25	1.96
7387285--7387331	19	2.4	19	85	3	58	19	36	6	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7393041--7393078	20	1.9	20	84	10	51	13	21	5	60	1.52
7393337--7393388	28	1.9	27	88	7	79	30	17	19	32	1.95
7393442--7393479	20	1.9	20	94	0	67	42	21	7	28	1.81
7395296--7395379	31	2.7	30	73	8	71	47	22	11	17	1.80
7401294--7401340	16	3.1	15	79	14	51	29	4	0	65	1.11
7401305--7401360	23	2.5	24	80	16	66	28	1	0	69	0.98
7402369--7402419	4	11.8	4	84	12	57	21	1	3	72	1.11
7409867--7409892	2	13.0	2	100	0	52	50	0	0	50	1.00
7411476--7411521	2	23.0	2	100	0	92	50	0	0	50	1.00
7419400--7419438	15	2.6	15	100	0	78	38	17	23	20	1.93
7423780--7423818	19	2.0	20	90	5	62	15	30	10	43	1.80
7424452--7424489	2	19.0	2	89	10	60	50	0	2	47	1.15
7424514--7424669	37	4.2	37	87	3	233	28	10	36	24	1.89
7424956--7425032	22	3.7	22	66	18	65	28	19	24	27	1.99
7426805--7426845	19	2.2	20	86	8	59	68	12	7	12	1.39
7426804--7426846	18	2.4	18	80	7	52	65	11	9	13	1.48
7429546--7429582	17	2.2	17	90	9	58	10	35	21	32	1.88
7437001--7437057	26	2.2	26	100	0	114	17	22	15	43	1.87
7443549--7443700	81	2.0	71	98	0	205	36	11	14	30	1.82
7453627--7453666	2	20.0	2	100	0	80	50	0	0	50	1.00
7455687--7455733	17	2.7	18	96	3	87	21	10	6	61	1.50
7456168--7456348	38	4.6	40	80	13	198	21	34	18	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7456172--7456348	78	2.3	78	95	0	318	22	35	18	24	1.95
7482626--7482795	43	4.0	43	89	1	234	23	34	18	24	1.96
7484545--7484658	36	3.2	36	89	0	165	22	10	35	31	1.88
7484768--7484811	22	2.0	22	86	0	61	27	11	22	38	1.88
7489280--7489319	21	2.0	21	90	5	64	45	7	0	47	1.31
7504507--7504642	43	3.2	43	88	0	191	23	36	15	25	1.94
7516047--7516071	13	1.9	13	100	0	50	48	8	0	44	1.32
7517199--7517250	28	1.9	27	81	14	63	28	19	19	32	1.96
7524078--7524137	23	2.6	23	89	0	84	33	38	1	26	1.67
7528220--7528255	18	1.9	18	88	5	54	30	11	16	41	1.83
7531651--7531691	14	2.9	14	88	3	55	70	0	26	2	0.99
7531661--7531698	19	2.0	19	89	0	58	73	0	26	0	0.83
7531657--7531697	15	2.8	15	88	3	57	75	0	24	0	0.80
7544008--7544229	42	5.1	42	86	6	293	24	16	34	24	1.96
7544008--7544229	89	2.6	84	86	5	293	24	16	34	24	1.96
7544719--7544758	19	2.1	19	95	0	71	27	30	25	17	1.97
7558608--7558640	2	16.5	2	100	0	66	51	0	0	48	1.00
7559041--7559100	25	2.3	27	77	11	70	30	15	26	28	1.96
7559057--7559104	25	1.9	25	91	0	78	27	16	31	25	1.97
7560983--7561020	20	1.9	20	100	0	76	28	5	21	44	1.73
7563643--7564004	179	2.0	179	95	0	652	32	12	21	33	1.91
7567970--7568090	61	2.0	61	91	0	197	44	21	16	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7567910--7568153	135	1.8	135	84	5	341	43	19	15	20	1.87
7576060--7576098	20	2.0	20	85	10	53	7	23	2	66	1.30
7577006--7577166	55	2.9	54	83	0	187	24	14	35	26	1.93
7583874--7584034	55	2.9	55	76	0	160	25	14	32	27	1.95
7592717--7592813	8	11.2	8	71	18	61	73	3	1	22	1.04
7592733--7592813	34	2.4	34	82	12	87	74	2	1	22	1.01
7592925--7592995	15	4.4	17	75	16	62	70	0	4	25	1.05
7593021--7593065	18	2.5	18	88	0	63	31	11	13	44	1.78
7593394--7593429	15	2.4	15	100	0	72	25	25	8	41	1.83
7601127--7601178	2	26.0	2	100	0	104	50	0	0	50	1.00
7601295--7601397	38	2.7	38	86	6	127	21	19	37	21	1.94
7601447--7601485	2	19.5	2	100	0	78	48	0	0	51	1.00
7601577--7601620	23	1.9	23	90	0	70	38	11	13	36	1.81
7606009--7606128	61	2.0	61	88	3	179	41	20	20	17	1.90
7608130--7608167	20	1.9	20	84	10	51	68	2	10	18	1.30
7611638--7611782	42	3.5	42	83	4	159	24	35	17	22	1.96
7611660--7611791	42	3.1	42	87	0	183	23	33	19	23	1.97
7614027--7614074	21	2.3	21	85	0	60	16	6	10	66	1.41
7615425--7615573	35	4.5	32	76	15	140	36	27	12	23	1.90
7615425--7615553	32	3.8	32	76	18	120	35	26	11	26	1.91
7615423--7615573	67	2.3	67	89	2	232	37	27	12	23	1.91
7616453--7616485	17	1.9	17	93	0	57	6	27	24	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7622578--7622659	42	1.9	43	92	2	139	21	32	19	25	1.97
7624419--7624801	193	2.0	191	99	0	748	22	27	15	33	1.95
7626188--7626431	35	7.2	35	74	12	199	34	26	13	25	1.94
7626192--7626434	67	3.6	67	91	2	373	34	26	13	25	1.94
7644780--7644816	17	2.2	17	95	0	65	32	24	35	8	1.85
7649163--7649230	21	3.2	20	75	24	68	77	1	14	5	1.02
7649143--7649231	9	9.0	9	72	15	52	75	1	16	6	1.08
7653542--7653644	38	2.6	40	86	6	140	18	17	41	22	1.90
7661235--7661918	351	1.9	351	96	0	1251	35	17	12	34	1.88
7665805--7665875	37	1.9	37	91	5	117	29	38	11	21	1.88
7666883--7666961	35	2.3	35	93	0	131	32	25	11	30	1.91
7666884--7666973	35	2.6	35	89	3	119	35	26	10	27	1.88
7666894--7667125	91	2.5	91	86	4	297	39	28	9	21	1.86
7667255--7667288	18	2.0	18	88	11	54	0	23	0	76	0.79
7668621--7668752	43	3.1	43	85	4	160	22	16	37	22	1.93
7676182--7676313	43	3.1	43	81	6	144	22	16	37	22	1.93
7677468--7677497	3	10.3	3	92	7	53	30	0	0	70	0.88
7679548--7679579	2	16.0	2	100	0	64	50	0	0	50	1.00
7688163--7688227	27	2.4	27	76	5	69	32	10	20	36	1.87
7688705--7688746	20	2.2	19	86	4	57	21	2	7	69	1.25
7689716--7689751	18	2.0	18	100	0	72	38	22	11	27	1.88
7689871--7689897	14	1.9	14	100	0	54	29	0	11	59	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7692132--7692177	20	2.3	20	88	7	67	32	4	17	45	1.68
7692222--7692274	28	1.9	27	88	3	79	30	18	22	28	1.98
7692222--7692280	28	2.1	28	84	6	75	30	20	23	25	1.98
7702389--7702449	25	2.4	25	88	0	95	24	31	16	27	1.96
7706160--7706192	17	1.9	17	100	0	66	21	36	12	30	1.90
7713426--7713494	35	2.0	35	85	5	95	31	26	10	31	1.89
7713913--7713938	13	2.0	13	100	0	52	23	23	23	30	1.99
7716061--7716153	40	2.3	40	85	5	118	34	25	17	22	1.96
7716475--7716593	43	2.8	43	85	2	150	20	36	20	22	1.95
7720077--7720203	50	2.5	51	82	5	143	30	12	23	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103