genome.fa.s5.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  54  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20557312--20557344	2	16.5	2	100	0	66	51	0	0	48	1.00
20558380--20558442	15	4.2	15	71	18	51	44	1	6	47	1.38
20558408--20558449	14	2.9	14	80	20	50	45	0	4	50	1.23
20560925--20560994	21	3.2	22	80	8	63	22	10	27	40	1.86
20560938--20560994	21	2.7	22	81	8	73	21	8	26	43	1.81
20567090--20567154	30	2.2	29	81	5	69	32	7	18	41	1.79
20573960--20573997	19	2.0	19	94	0	67	28	0	28	42	1.56
20585510--20585550	22	1.9	21	85	5	55	51	4	17	26	1.65
20594498--20594551	2	27.0	2	92	7	92	48	0	0	50	1.01
20596914--20596952	2	19.5	2	83	0	51	43	2	5	48	1.38
20603396--20603509	42	2.7	42	87	4	158	21	35	21	20	1.96
20605973--20606017	21	2.1	21	87	0	72	37	17	13	31	1.89
20614677--20614716	20	2.0	20	90	0	62	50	7	7	35	1.59
20616636--20616728	36	2.6	36	81	10	118	30	25	15	29	1.95
20620346--20620418	33	2.2	34	80	9	87	34	9	23	32	1.87
20620577--20620649	5	14.2	5	80	11	85	76	0	23	0	0.78
20620666--20620722	25	2.3	25	82	14	73	43	14	28	14	1.83
20627096--20627134	16	2.3	18	82	13	55	69	5	25	0	1.09
20627675--20627725	15	3.4	15	83	5	59	72	1	17	7	1.18
20627745--20627803	25	2.4	25	83	13	77	44	13	23	18	1.86
20630888--20630929	19	2.2	19	83	8	50	59	2	16	21	1.48
20631812--20631997	43	4.3	43	89	0	255	26	17	31	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20635291--20635324	18	1.9	18	88	5	52	70	0	29	0	0.87
20643920--20643977	18	3.2	18	85	0	71	17	25	24	32	1.96
20646874--20646913	19	2.0	21	85	9	57	45	20	10	25	1.81
20647065--20647212	37	3.8	37	75	18	147	26	41	11	20	1.86
20647101--20647228	37	3.2	39	69	13	98	25	39	12	22	1.89
20647064--20647281	83	2.7	82	90	1	348	24	39	12	22	1.89
20649312--20649352	21	1.9	22	90	5	66	51	7	24	17	1.70
20649312--20649358	21	2.2	21	84	3	58	55	8	21	14	1.66
20651628--20651657	11	2.7	11	100	0	60	40	0	0	60	0.97
20656222--20656331	37	3.0	37	86	0	139	26	10	36	26	1.89
20666690--20666740	21	2.4	21	100	0	102	35	21	9	33	1.86
20669860--20669996	37	3.5	36	70	20	112	26	41	10	21	1.86
20669848--20670094	81	3.0	80	86	4	334	26	37	12	23	1.90
20676567--20676609	2	21.0	2	81	13	52	48	2	2	46	1.27
20677040--20677098	23	2.5	23	83	8	66	57	0	5	37	1.21
20677449--20677506	24	2.4	24	82	5	73	20	20	15	43	1.88
20681041--20681081	22	1.9	21	85	5	55	51	4	17	26	1.65
20695790--20695830	21	2.1	19	86	9	55	60	9	0	29	1.28
20696937--20696981	23	2.0	23	82	8	56	55	0	26	17	1.42
20697206--20697248	21	2.0	21	95	0	77	13	30	9	46	1.75
20700067--20700172	38	2.7	38	91	2	167	21	15	39	23	1.91
20701315--20701444	43	3.0	43	80	4	129	24	16	33	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20711235--20711337	38	2.6	40	83	3	129	21	15	38	24	1.92
20715261--20715325	30	2.2	30	88	0	94	44	16	9	29	1.79
20715309--20715372	24	2.7	24	73	9	67	42	12	12	32	1.80
20715348--20715401	28	1.9	28	81	7	65	44	16	11	27	1.82
20720067--20720352	42	6.8	42	87	0	383	22	21	32	23	1.98
20723781--20723986	42	4.9	42	86	2	281	23	24	30	21	1.99
20725977--20726079	38	2.7	38	83	6	127	22	39	16	21	1.92
20725977--20726075	19	5.1	19	63	9	56	21	39	17	22	1.92
20728594--20728624	16	1.9	16	93	0	53	29	3	22	45	1.68
20728592--20728735	20	7.3	20	65	3	58	32	4	16	45	1.69
20729912--20729955	8	5.2	8	78	10	52	52	15	0	31	1.44
20729902--20729955	18	2.9	18	77	5	54	51	18	0	29	1.46
20740831--20740891	6	10.2	6	72	0	50	45	9	3	40	1.53
20740831--20740891	4	15.2	4	78	0	50	45	9	3	40	1.53
20740843--20740891	10	4.7	10	78	9	53	46	10	2	40	1.49
20767427--20767484	23	2.5	23	83	8	73	34	34	1	29	1.68
20767481--20767603	43	2.9	43	80	2	140	20	34	17	26	1.95
20772217--20772437	35	6.3	35	78	4	176	35	8	13	42	1.74
20773911--20773950	18	2.2	18	90	0	62	37	2	17	42	1.63
20775519--20775560	2	21.0	2	100	0	84	50	0	0	50	1.00
20775858--20775892	2	17.5	2	100	0	70	48	0	0	51	1.00
20779736--20779770	2	17.5	2	93	0	61	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20779886--20779991	38	2.7	40	85	2	135	22	14	36	26	1.92
20783310--20783383	33	2.3	32	81	6	87	25	22	22	28	1.99
20785312--20785392	42	1.9	42	89	0	126	24	18	33	23	1.97
20785320--20785402	42	2.0	42	87	0	121	24	19	34	21	1.96
20793364--20793531	28	5.8	27	79	12	165	42	8	12	36	1.73
20793366--20793520	59	2.7	58	85	5	188	41	8	12	38	1.73
20793673--20793705	17	1.9	17	88	11	50	39	3	15	42	1.62
20800847--20800956	43	2.6	43	85	0	130	25	20	33	20	1.97
20808356--20808448	42	2.2	42	83	5	109	26	17	30	25	1.97
20809685--20809839	54	2.9	54	89	0	229	19	12	40	27	1.88
20812646--20812686	2	20.5	2	100	0	82	48	0	0	51	1.00
20816379--20816432	28	2.0	28	89	10	85	29	22	18	29	1.97
20817776--20817878	38	2.6	39	83	8	122	22	15	38	23	1.92
20818212--20818254	21	2.0	21	86	0	59	25	27	18	27	1.98
20826010--20826113	38	2.7	40	83	3	131	25	39	14	21	1.91
20832076--20832114	2	19.5	2	89	0	60	48	2	2	46	1.29
20832119--20832181	20	3.2	20	90	2	101	31	41	1	25	1.65
20832180--20832341	43	3.8	43	93	1	254	19	37	20	21	1.94
20834778--20834909	65	2.0	65	95	2	239	36	21	7	34	1.82
20836785--20836846	26	2.4	26	91	0	97	32	38	3	25	1.72
20837081--20837246	42	4.0	42	95	0	296	22	33	22	21	1.97
20841609--20841704	38	2.5	37	83	11	115	22	40	14	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20841803--20841834	2	16.0	2	100	0	64	50	0	0	50	1.00
20849663--20849874	115	1.8	115	88	4	329	29	30	16	24	1.96
20851781--20851839	26	2.3	26	79	5	66	1	28	3	66	1.18
20866894--20866919	11	2.4	11	100	0	52	73	0	0	26	0.84
20871330--20871371	20	2.2	19	84	16	52	30	2	26	40	1.69
20871366--20871474	37	2.9	36	89	5	157	30	10	34	24	1.88
20875250--20875279	12	2.5	12	94	0	51	20	30	30	20	1.97
20890638--20890687	20	2.5	20	96	0	91	64	10	18	8	1.48
20896493--20896531	2	19.5	2	100	0	78	48	0	0	51	1.00
20896558--20896683	42	3.0	42	86	1	117	20	33	21	24	1.97
20896571--20896683	42	2.7	42	88	1	154	19	33	23	23	1.97
20900309--20900429	63	2.0	61	96	1	215	28	10	28	31	1.90
20901380--20901628	35	7.1	35	81	3	252	34	6	13	45	1.69
20901419--20901479	18	3.4	18	70	17	56	34	9	11	44	1.74
20901402--20901628	107	2.1	106	84	3	305	34	7	12	45	1.70
20901376--20901642	142	1.9	138	85	4	365	36	6	12	44	1.68
20905827--20905872	21	2.2	20	84	7	56	15	21	6	56	1.61
20905832--20905872	21	1.9	22	90	5	66	17	24	7	51	1.70
20924648--20924732	31	2.8	30	82	7	91	43	4	20	31	1.72
20928153--20928294	35	4.1	35	88	3	198	31	32	10	25	1.90
20928153--20928294	69	2.0	70	89	4	216	31	32	10	25	1.90
20931111--20931152	19	2.2	19	86	0	57	38	7	35	19	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20936540--20936574	17	2.1	17	94	0	61	8	37	22	31	1.85
20945264--20945450	42	4.3	43	80	8	184	27	18	30	22	1.98
20945344--20945437	43	2.2	43	88	3	136	30	17	30	21	1.96
20945340--20945454	43	2.6	43	82	8	135	30	19	29	20	1.97
20950342--20950401	20	3.0	20	82	0	75	35	15	15	35	1.88
20950644--20950727	21	3.9	22	78	4	91	50	14	4	30	1.63
20950644--20950727	43	2.0	43	85	4	116	50	14	4	30	1.63
20950705--20950757	21	2.5	21	81	0	70	47	18	9	24	1.78
20950954--20951000	21	2.3	21	82	10	53	44	10	21	23	1.83
20971717--20971810	46	2.0	46	93	0	161	39	27	6	26	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103