genome.fa.s5.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  49  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18472421--18472514	50	1.9	47	85	6	125	47	1	3	47	1.25
18472803--18472849	17	2.8	17	70	23	53	48	0	2	48	1.13
18472916--18472949	16	2.2	16	89	5	52	50	0	2	47	1.16
18489453--18489482	15	2.0	15	100	0	60	33	6	20	40	1.78
18489752--18489863	26	4.6	25	78	12	117	24	14	25	35	1.93
18489752--18489863	48	2.3	49	86	4	156	24	14	25	35	1.93
18489772--18489883	23	4.8	23	75	15	95	25	12	26	34	1.92
18489894--18489973	22	3.7	22	83	3	90	46	26	8	18	1.78
18489910--18489973	21	3.0	22	86	4	94	43	26	10	18	1.83
18493186--18493215	15	1.9	16	93	6	53	16	6	10	66	1.41
18494757--18495294	282	1.9	279	82	4	654	49	11	10	28	1.71
18496390--18496479	36	2.5	36	92	0	153	35	15	30	18	1.92
18496415--18496491	36	2.1	36	85	0	100	35	18	29	16	1.93
18498830--18498871	15	2.8	16	75	10	52	21	7	33	38	1.81
18502078--18502141	29	2.2	29	86	2	85	45	18	6	29	1.74
18502893--18503001	35	3.1	35	89	0	164	28	35	9	26	1.87
18502864--18503001	70	2.0	70	85	2	188	28	34	10	25	1.90
18505623--18505649	14	1.9	14	100	0	54	59	11	0	29	1.32
18510034--18510115	42	2.0	42	90	0	128	21	20	35	21	1.96
18510393--18510435	21	2.0	21	86	0	59	30	18	27	23	1.98
18514647--18514673	14	1.9	14	100	0	54	59	11	0	29	1.32
18521386--18521505	36	3.3	36	78	0	141	39	16	26	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18525163--18525188	2	13.0	2	100	0	52	50	0	0	50	1.00
18525229--18525352	42	3.0	42	86	0	176	20	33	21	24	1.97
18536179--18536224	20	2.3	20	80	0	56	8	21	8	60	1.53
18538184--18538212	2	14.5	2	100	0	58	51	0	0	48	1.00
18538103--18538319	106	2.0	106	96	0	407	35	7	19	37	1.80
18538289--18538318	2	15.0	2	100	0	60	50	0	0	50	1.00
18542828--18542893	20	3.3	20	93	4	107	33	18	16	31	1.93
18550993--18551108	50	2.3	50	87	0	169	31	19	13	35	1.91
18551980--18552022	21	2.0	22	82	13	54	51	0	4	44	1.22
18552781--18552953	37	4.7	37	79	4	161	35	24	12	27	1.91
18552781--18552938	74	2.1	74	85	0	208	34	25	12	27	1.92
18554911--18554959	21	2.3	20	76	10	53	32	14	20	32	1.92
18557289--18557396	43	2.5	43	84	3	137	22	17	38	21	1.93
18557751--18557818	21	3.2	21	89	0	100	26	14	25	33	1.94
18565686--18565845	63	2.5	66	80	11	195	18	20	25	36	1.95
18565912--18566004	36	2.6	36	70	3	89	24	19	30	25	1.98
18568155--18568214	20	3.0	20	82	2	86	20	38	8	33	1.82
18579496--18579558	20	3.2	20	90	2	101	30	41	3	25	1.71
18579557--18579718	43	3.8	43	92	1	245	20	37	20	21	1.94
18583309--18583358	19	2.6	19	78	12	66	42	4	38	16	1.66
18587382--18587423	2	21.0	2	95	0	75	50	2	0	47	1.14
18603605--18603682	8	9.4	8	69	12	50	44	1	1	52	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18608729--18608767	2	19.5	2	100	0	78	48	0	0	51	1.00
18614837--18614906	36	1.9	36	82	5	88	31	12	22	32	1.92
18615904--18615962	31	1.9	31	92	0	100	40	18	8	32	1.81
18628958--18628995	19	2.0	19	100	0	76	42	31	0	26	1.56
18647463--18647498	16	2.3	15	90	4	54	55	0	0	44	0.99
18650940--18651010	36	2.0	36	94	5	126	49	18	16	15	1.80
18657941--18657971	2	15.5	2	100	0	62	51	0	0	48	1.00
18658063--18658103	2	20.5	2	94	0	64	51	4	0	43	1.23
18664301--18664340	18	2.2	19	86	4	55	30	2	0	67	1.04
18682382--18682411	3	10.0	3	100	0	60	0	66	0	33	0.92
18687891--18687920	15	2.0	15	93	0	51	50	6	6	36	1.55
18698251--18698283	6	5.5	6	92	0	57	36	18	45	0	1.49
18708260--18708294	16	2.2	16	94	0	61	28	5	8	57	1.52
18711022--18711581	281	2.0	281	95	0	1012	30	10	26	32	1.90
18713891--18714391	251	2.0	251	99	0	977	38	7	10	42	1.68
18717643--18717709	32	2.1	32	88	5	100	2	44	22	29	1.67
18717766--18717834	32	2.2	30	82	9	93	5	46	21	26	1.74
18717774--18717834	32	1.9	32	93	0	104	4	47	24	22	1.71
18717647--18718092	127	3.5	127	95	0	779	4	45	19	29	1.71
18717893--18717961	32	2.2	30	82	9	93	5	46	21	26	1.74
18717901--18717961	32	1.9	32	93	0	104	4	47	24	22	1.71
18718028--18718090	32	1.9	33	93	3	110	3	46	23	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18718353--18718383	7	4.4	7	100	0	62	12	12	0	74	1.08
18721091--18721142	23	2.3	24	80	12	65	46	17	9	26	1.79
18721052--18721171	62	1.9	62	86	5	170	41	20	10	28	1.84
18721158--18721230	20	3.7	20	83	0	101	39	12	13	34	1.82
18721769--18721839	36	2.0	36	85	0	97	35	11	23	29	1.90
18730551--18730597	24	2.0	24	82	0	58	10	34	17	38	1.84
18730559--18730610	24	2.2	24	85	0	68	7	32	19	40	1.80
18730578--18730654	24	3.2	24	86	0	82	3	37	16	41	1.67
18733209--18733299	43	2.1	43	93	2	157	24	35	16	24	1.95
18735095--18735146	26	2.0	26	96	0	95	21	13	7	57	1.61
18735088--18735153	26	2.8	23	79	18	73	22	13	6	57	1.58
18735512--18735565	23	2.3	24	81	6	58	25	5	29	38	1.79
18735594--18735650	23	2.5	23	80	5	62	28	3	29	38	1.73
18735764--18735814	23	2.2	23	82	0	57	31	7	33	27	1.85
18737256--18737374	61	2.0	61	88	3	177	32	11	21	33	1.90
18743132--18743190	22	2.7	22	81	5	66	47	22	11	18	1.81
18743104--18743355	119	2.1	118	93	0	405	45	26	11	16	1.81
18743251--18743309	22	2.7	22	81	0	64	50	23	10	15	1.74
18743322--18743478	87	1.8	86	82	8	205	40	26	15	18	1.90
18746162--18746187	13	2.0	13	100	0	52	15	0	30	53	1.42
18747844--18747881	20	1.9	20	88	0	58	44	13	10	31	1.77
18747762--18747893	60	2.2	60	80	2	149	37	18	12	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18749399--18749481	34	2.4	34	90	4	123	55	1	0	43	1.07
18749562--18749776	74	2.9	74	89	0	315	44	8	7	39	1.64
18750062--18750144	1	83.0	1	92	0	139	96	0	0	3	0.22
18750422--18750462	18	2.4	17	88	8	57	0	34	0	65	0.93
18750431--18750469	20	2.0	20	89	0	60	0	38	0	61	0.96
18760653--18760850	66	3.0	66	98	0	378	35	15	22	26	1.94
18769723--18769760	14	2.7	14	91	0	58	63	13	10	13	1.53
18781739--18781768	2	15.0	2	92	0	51	50	0	3	46	1.18
18782246--18782296	23	2.2	23	82	0	57	21	7	39	31	1.82
18782302--18782687	47	8.2	47	81	0	412	27	16	30	26	1.96
18782466--18782591	23	5.4	23	67	14	78	28	17	30	23	1.97
18782609--18782756	70	2.1	70	84	2	190	32	16	26	24	1.96
18782562--18782786	117	1.9	117	84	0	297	30	15	28	24	1.96
18783421--18783696	31	8.9	31	86	4	371	30	17	17	34	1.93
18783421--18783692	93	2.9	93	90	2	413	30	17	17	34	1.93
18784916--18785392	145	3.2	146	75	8	473	29	21	18	30	1.97
18784916--18785456	145	3.7	151	75	8	452	29	20	18	30	1.97
18785027--18785480	151	3.0	147	74	14	403	29	21	19	30	1.97
18784916--18785456	296	1.8	296	87	0	787	29	20	18	30	1.97
18786002--18786160	75	2.1	75	88	2	230	23	18	30	27	1.98
18788422--18788524	38	2.6	40	81	6	131	21	15	39	23	1.91
18788890--18788931	21	2.0	21	85	0	57	35	19	26	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18789168--18789211	22	2.0	22	86	0	61	31	20	15	31	1.94
18790372--18790490	62	1.9	62	82	0	148	29	28	14	27	1.95
18790506--18790639	62	2.2	62	83	0	169	26	32	15	25	1.95
18790337--18790685	148	2.4	148	86	2	470	26	28	19	25	1.99
18790568--18790726	86	1.8	86	84	0	219	28	30	16	23	1.97
18790337--18790725	148	2.6	148	83	1	395	26	29	18	25	1.98
18790642--18790839	106	1.9	107	84	1	272	30	27	21	21	1.98
18794581--18794689	31	3.5	31	88	2	157	34	21	14	29	1.93
18795036--18795158	63	2.0	63	88	0	183	34	10	29	25	1.89
18798635--18798675	21	1.9	22	85	5	57	51	2	2	43	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103