genome.fa.s5.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  28  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10490286--10490361	26	2.8	26	75	11	73	0	34	2	63	1.09
10490358--10490426	34	2.0	34	88	5	104	2	34	8	53	1.47
10490405--10490453	13	3.9	13	72	20	50	0	30	0	69	0.89
10490485--10490531	16	3.0	15	80	20	60	0	23	0	76	0.78
10490583--10490613	15	2.1	15	93	0	53	0	16	0	83	0.64
10490774--10490825	20	2.6	20	80	20	56	36	1	0	61	1.07
10492794--10492874	42	1.9	43	87	2	119	27	18	33	20	1.96
10499568--10499624	30	1.9	30	92	0	96	31	10	21	36	1.87
10502498--10502906	203	2.0	203	99	0	800	38	8	19	33	1.82
10507837--10507959	43	2.9	43	85	2	131	26	18	33	21	1.97
10511948--10512022	36	2.1	36	87	0	105	34	20	10	34	1.87
10518151--10518186	17	2.1	17	94	0	63	55	0	8	36	1.30
10530754--10530858	34	3.1	34	83	1	138	29	35	11	23	1.90
10531952--10532003	25	2.1	25	96	0	95	30	30	1	36	1.69
10532014--10532167	84	1.8	84	85	0	218	32	22	9	35	1.87
10532011--10532191	84	2.2	84	81	2	211	33	22	8	35	1.84
10538602--10538675	20	3.7	19	77	16	69	32	16	16	35	1.91
10542117--10542183	32	2.1	32	100	0	134	14	22	17	44	1.86
10545974--10546042	29	2.3	30	80	11	88	46	2	13	37	1.58
10555284--10555323	19	2.0	20	95	4	73	30	0	27	42	1.56
10558104--10558153	21	2.4	21	82	0	64	26	24	24	26	2.00
10561994--10562035	20	2.1	20	86	0	57	35	19	19	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10563552--10563610	18	3.3	18	64	17	50	47	13	5	33	1.65
10563534--10563678	36	4.1	36	78	7	152	46	15	5	33	1.69
10565601--10566250	60	10.7	60	78	5	511	38	10	17	33	1.85
10566577--10566627	4	12.8	4	76	15	52	74	1	0	23	0.92
10566626--10566652	4	6.8	4	100	0	54	77	22	0	0	0.76
10575922--10576023	32	3.1	33	75	9	109	37	23	15	23	1.93
10580367--10580404	19	2.0	20	94	5	69	21	23	15	39	1.92
10581199--10581280	43	1.9	43	87	0	119	26	19	34	19	1.96
10581684--10581769	39	2.2	40	91	2	138	20	20	24	33	1.97
10583868--10583911	2	22.0	2	90	0	70	45	0	4	50	1.22
10588841--10588865	13	1.9	13	100	0	50	48	8	0	44	1.32
10594264--10594362	36	2.7	38	80	4	112	27	41	10	21	1.85
10605476--10605524	2	24.5	2	100	0	98	48	0	0	51	1.00
10606371--10606415	2	22.5	2	81	0	54	4	4	44	46	1.43
10606370--10606410	14	2.9	14	100	0	82	7	4	43	43	1.53
10610277--10610307	15	2.0	16	93	6	55	77	9	0	12	0.99
10611309--10611343	17	2.1	17	94	0	61	65	2	0	31	1.07
10612078--10612116	19	2.0	20	90	5	62	82	0	0	17	0.68
10616698--10616770	30	2.5	29	78	12	78	54	1	1	42	1.17
10618088--10618129	12	3.5	12	78	12	50	57	0	23	19	1.41
10622846--10622964	43	2.8	43	85	2	141	19	36	20	24	1.95
10642033--10642202	43	4.0	43	86	0	223	25	19	32	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10657794--10657959	43	4.0	43	85	7	216	25	18	33	22	1.97
10674289--10674325	17	2.2	17	90	0	56	32	21	35	10	1.88
10674676--10674870	72	2.7	73	87	4	252	35	21	20	23	1.96
10677030--10677066	18	2.1	18	94	0	65	29	21	13	35	1.92
10687137--10687184	26	2.0	23	84	12	60	54	0	0	45	0.99
10691753--10691939	85	2.2	85	91	0	302	40	15	4	39	1.69
10691945--10691983	13	3.0	13	81	11	53	43	25	0	30	1.55
10691875--10692005	67	1.9	68	89	1	201	41	18	3	37	1.66
10691939--10692306	84	4.4	84	89	1	558	43	17	4	34	1.69
10692197--10692235	13	3.0	13	81	11	53	46	25	0	28	1.53
10692215--10692365	72	2.1	72	85	4	198	41	16	5	36	1.71
10699965--10700016	23	2.1	26	82	10	65	44	0	0	55	0.99
10707804--10707848	19	2.3	20	85	7	67	33	0	24	42	1.55
10709082--10709106	13	1.9	13	100	0	50	52	0	0	48	1.00
10710541--10710585	22	2.0	23	83	12	58	51	11	11	26	1.71
10715636--10715683	19	2.6	18	87	9	62	56	0	4	39	1.19
10717400--10717567	42	4.0	42	80	0	165	26	19	32	21	1.97
10719241--10719288	14	3.4	14	75	11	53	64	0	35	0	0.94
10719252--10719299	4	12.0	4	82	12	55	70	0	29	0	0.87
10719230--10719310	28	3.0	28	87	7	114	67	0	32	0	0.91
10721898--10721962	18	3.8	18	75	15	66	61	0	1	36	1.05
10726535--10726625	36	2.5	36	89	3	139	27	12	27	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10727649--10727731	31	2.7	32	81	5	89	34	27	12	25	1.91
10728562--10728859	93	3.2	93	96	1	551	32	21	14	31	1.93
10731179--10731216	20	1.9	20	84	10	51	34	2	13	50	1.55
10735417--10735475	28	2.1	28	84	6	75	30	23	23	22	1.99
10738992--10739049	28	2.1	27	78	12	64	32	22	20	24	1.98
10740173--10740197	13	1.9	13	100	0	50	44	0	8	48	1.32
10745895--10745928	16	2.1	16	88	0	50	20	8	5	64	1.43
10746410--10746461	15	3.4	15	74	12	52	26	19	5	48	1.71
10750876--10751251	188	2.0	188	96	0	698	40	12	12	34	1.81
10789264--10789311	2	24.0	2	95	0	87	47	0	2	50	1.12
10796136--10796170	18	1.9	18	88	0	52	54	0	8	37	1.31
10797373--10797397	3	8.3	3	100	0	50	64	0	36	0	0.94
10799020--10799058	21	1.9	21	94	5	71	30	25	10	33	1.89
10802022--10802059	20	1.9	20	88	0	58	39	15	10	34	1.82
10803601--10803716	2	57.0	2	81	10	85	43	6	3	46	1.45
10803601--10803749	76	2.0	75	100	0	289	40	9	5	44	1.60
10807480--10807539	22	2.7	22	81	0	75	23	20	26	30	1.98
10807839--10807922	43	2.0	43	95	0	150	23	36	19	20	1.95
10811010--10811114	2	53.0	2	95	1	185	51	0	0	47	1.00
10814540--10814603	31	2.1	31	100	0	128	39	15	6	39	1.73
10819324--10819405	2	40.5	2	91	2	128	48	2	1	47	1.22
10827903--10827948	20	2.3	20	96	0	83	45	21	4	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10831674--10831700	13	2.1	13	100	0	54	37	11	7	44	1.68
10834089--10834137	25	2.0	25	91	0	80	36	20	16	26	1.93
10834037--10834179	63	2.3	62	80	8	155	34	20	16	27	1.94
10851740--10851788	2	24.5	2	100	0	98	51	0	0	48	1.00
10853112--10853156	18	2.4	18	88	3	63	35	0	2	62	1.08
10857350--10857428	31	2.6	30	78	11	90	53	3	15	27	1.59
10878227--10878361	43	3.1	43	83	2	171	23	25	14	36	1.93
10880936--10880975	19	2.0	20	95	4	73	42	27	0	30	1.56
10883448--10883492	17	2.6	17	79	6	56	73	0	8	17	1.08
10883448--10883508	7	7.7	7	75	20	50	77	0	6	16	0.98
10883448--10883517	15	4.4	15	77	13	52	75	1	5	17	1.06
10887238--10887325	21	3.9	21	68	18	68	35	10	18	36	1.84
10889388--10889433	19	2.4	20	82	10	60	54	0	2	43	1.12
10900097--10900122	8	3.2	8	100	0	52	23	0	0	76	0.78
10901225--10901271	16	2.9	16	81	6	51	23	4	0	72	1.02
10901232--10901301	19	3.8	20	74	22	57	21	5	0	72	1.05
10901232--10901299	27	2.5	26	76	11	75	20	5	0	73	1.04
10902421--10902494	34	2.2	34	90	0	112	12	35	12	40	1.80
10905282--10905660	47	8.0	47	76	5	282	30	14	17	36	1.90
10905290--10905631	94	3.6	94	76	4	321	30	14	18	37	1.90
10905262--10905660	94	4.2	94	73	6	315	30	15	17	37	1.90
10912222--10912257	4	9.0	4	100	0	72	25	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10934180--10934217	19	2.0	19	89	0	58	28	2	28	39	1.70
10934383--10934442	30	2.1	29	81	6	68	30	8	23	38	1.84
10935588--10935612	13	1.9	13	100	0	50	44	0	8	48	1.32
10936816--10936856	15	2.7	16	88	7	59	26	2	19	51	1.59
10936812--10936857	15	3.1	15	81	9	58	23	2	17	56	1.52
10936892--10936924	14	2.3	15	94	5	59	39	0	21	39	1.53
10936893--10936932	19	2.1	19	90	0	62	35	2	25	37	1.69
10936892--10936924	5	6.8	5	93	6	59	39	0	21	39	1.53
10940680--10940717	19	2.0	19	89	0	58	28	2	28	39	1.70
10942087--10942111	13	1.9	13	100	0	50	44	0	8	48	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103