genome.fa.s5.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  91  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33419792--33419835	22	2.0	22	81	0	52	27	6	15	50	1.70
33420015--33420047	2	16.5	2	93	0	57	48	0	3	48	1.17
33421337--33421386	2	25.0	2	100	0	100	50	0	0	50	1.00
33422076--33422125	2	25.0	2	84	8	66	44	0	4	52	1.20
33422076--33422125	19	2.6	19	87	0	73	44	0	4	52	1.20
33429001--33429031	3	10.3	3	92	0	53	3	67	29	0	1.06
33432404--33432428	2	12.5	2	100	0	50	0	52	0	48	1.00
33436381--33436405	12	2.1	12	100	0	50	24	0	0	76	0.80
33436736--33436760	9	2.8	9	100	0	50	48	16	0	36	1.46
33448917--33449029	56	2.0	56	96	0	208	29	9	30	30	1.89
33472719--33472813	36	2.6	36	86	0	145	41	2	29	27	1.68
33472820--33472878	30	2.0	30	93	0	100	47	8	28	15	1.74
33474462--33474514	23	2.3	23	100	0	106	24	11	22	41	1.86
33476522--33476587	31	2.1	31	94	0	114	7	24	7	60	1.50
33476897--33476963	27	2.4	27	85	11	84	19	22	1	56	1.50
33483724--33483783	23	2.6	23	81	0	75	15	6	26	51	1.67
33485107--33485149	2	21.5	2	85	0	59	41	0	6	51	1.29
33485585--33485630	20	2.3	20	88	7	67	56	2	0	41	1.11
33492351--33492493	72	2.0	71	100	0	277	43	11	15	29	1.81
33492941--33492997	23	2.5	23	79	0	60	28	10	35	26	1.89
33493158--33493350	23	8.3	22	71	10	82	29	14	31	24	1.95
33493201--33493391	70	2.7	70	76	3	186	30	15	28	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33493247--33493313	24	2.8	24	88	2	91	29	19	25	25	1.98
33493400--33493467	23	3.0	23	71	0	64	27	16	25	30	1.96
33494215--33494582	31	11.6	31	82	8	400	29	15	18	36	1.92
33494284--33494365	41	2.0	41	92	0	137	35	18	13	32	1.90
33494325--33494582	92	2.8	92	88	3	358	29	15	18	36	1.92
33494327--33494582	123	2.1	124	88	2	372	29	15	18	36	1.92
33495929--33496859	464	2.0	464	95	0	1673	31	15	19	32	1.94
33498832--33498912	31	2.6	31	92	0	126	32	22	19	25	1.98
33498878--33499375	117	4.3	117	83	2	597	28	28	17	25	1.98
33499243--33499301	31	1.9	31	85	0	82	25	37	10	27	1.88
33499505--33499552	22	2.2	21	82	7	60	50	2	2	45	1.25
33499511--33499553	22	2.0	22	90	0	68	51	2	2	44	1.27
33502063--33502115	21	2.5	21	84	6	63	22	32	9	35	1.86
33502994--33503092	22	4.5	21	80	8	99	33	22	15	29	1.94
33502970--33503118	23	6.5	23	76	7	126	33	21	16	28	1.95
33502970--33503092	44	2.8	45	84	2	149	31	21	17	29	1.96
33503060--33503099	12	3.4	12	79	6	55	27	27	15	30	1.96
33502975--33503118	22	6.3	23	74	6	96	34	21	15	27	1.94
33503353--33503472	63	1.9	63	82	0	150	35	14	26	24	1.93
33504279--33504305	2	13.5	2	100	0	54	48	0	0	51	1.00
33504737--33504782	20	2.3	20	81	7	58	54	2	0	43	1.12
33505784--33505828	14	3.2	14	78	12	56	60	0	4	35	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33506076--33506110	16	2.3	15	90	5	52	34	0	0	65	0.93
33508504--33508541	18	2.1	18	95	0	67	39	15	10	34	1.82
33508507--33508556	18	2.8	18	84	6	57	42	16	12	30	1.84
33519066--33519099	17	2.0	17	88	0	50	23	0	8	67	1.18
33519947--33519972	4	6.5	4	100	0	52	76	0	0	23	0.78
33524877--33524902	13	2.0	13	100	0	52	30	38	0	30	1.58
33542698--33542737	21	2.0	21	85	9	57	42	0	5	52	1.23
33544640--33544693	28	1.9	28	88	7	83	29	3	0	66	1.09
33548069--33548106	19	2.0	20	89	5	60	28	2	2	65	1.19
33548739--33548785	22	2.1	22	88	0	67	34	10	12	42	1.78
33548863--33548944	23	3.6	23	86	0	119	39	28	7	25	1.82
33565558--33565601	17	2.8	16	82	6	54	38	0	2	59	1.10
33566459--33566491	2	17.5	2	87	12	52	51	0	0	48	1.00
33566491--33566527	1	37.0	1	100	0	74	100	0	0	0	0.00
33568836--33568883	14	3.3	14	77	8	51	79	0	16	4	0.89
33570020--33570045	2	13.0	2	100	0	52	50	0	0	50	1.00
33574477--33574521	4	12.5	4	82	17	55	26	0	0	73	0.84
33574481--33574525	7	6.6	7	87	12	67	26	0	0	73	0.84
33574861--33574950	11	8.3	11	73	22	50	25	2	0	72	0.96
33574866--33574946	27	2.9	26	76	20	76	24	2	0	72	0.96
33574870--33574940	26	2.7	26	81	12	83	25	2	0	71	0.99
33575497--33575544	23	2.0	24	84	11	64	8	43	20	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33575801--33575838	11	3.5	11	85	7	51	15	0	0	84	0.63
33575803--33575843	10	4.0	10	84	6	55	17	0	0	82	0.66
33575801--33575843	21	2.0	21	86	0	59	18	0	0	81	0.69
33575802--33575842	17	2.5	17	88	4	57	14	0	0	85	0.60
33575851--33575889	10	4.1	10	90	9	55	35	0	0	64	0.94
33589813--33590053	121	2.0	120	100	0	473	34	28	14	22	1.93
33596976--33597016	2	21.0	2	95	5	75	0	0	48	51	1.00
33597130--33597205	35	2.2	35	83	4	91	35	10	30	23	1.89
33608775--33609181	118	3.5	118	80	4	362	44	24	11	18	1.83
33608886--33609279	111	3.5	110	83	4	439	45	25	10	18	1.81
33609919--33609978	30	2.0	30	86	0	84	33	25	15	26	1.95
33612165--33612243	21	3.7	20	67	17	59	30	18	17	32	1.95
33612150--33612452	45	6.6	45	75	9	256	36	20	18	25	1.95
33612233--33612475	24	10.4	24	73	10	198	38	22	17	21	1.93
33612201--33612476	93	3.0	93	88	0	426	37	21	18	22	1.94
33612350--33612554	69	2.9	69	83	3	221	36	20	18	24	1.95
33612511--33612585	26	3.0	24	76	18	73	38	16	17	28	1.91
33612498--33612852	169	2.1	168	94	2	626	39	13	12	34	1.82
33612680--33612754	26	3.0	24	76	18	73	38	16	16	29	1.90
33612482--33612826	29	12.3	29	72	17	180	39	14	12	33	1.84
33613201--33613246	23	2.0	23	86	0	65	50	8	28	13	1.70
33617717--33617746	3	10.0	3	100	0	60	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33624181--33624228	24	2.0	24	95	0	87	27	18	8	45	1.78
33627932--33627992	16	3.8	15	72	20	52	80	1	8	9	0.98
33627948--33627998	19	2.6	19	73	14	50	78	3	5	11	1.06
33649546--33649610	32	2.0	32	100	0	130	36	30	15	16	1.90
33653755--33653817	31	2.1	31	87	3	92	42	15	11	30	1.82
33658327--33658400	30	2.5	30	80	6	80	39	1	2	56	1.22
33663347--33663405	18	3.4	18	78	21	81	23	22	32	22	1.98
33663335--33663414	33	2.4	33	95	4	144	23	23	32	20	1.98
33663335--33663387	15	3.3	15	76	23	63	26	20	32	20	1.98
33663449--33663498	18	2.8	18	84	0	64	26	22	38	14	1.91
33663723--33663760	15	2.5	15	87	8	51	71	0	13	15	1.16
33663723--33663759	14	2.6	15	83	12	51	70	0	13	16	1.17
33663880--33663909	2	15.0	2	92	0	51	46	50	3	0	1.18
33672458--33672486	13	2.1	14	93	6	51	0	10	0	89	0.48
33672458--33672486	7	4.3	7	91	8	51	0	10	0	89	0.48
33688309--33688375	21	3.2	21	82	0	98	7	34	5	52	1.54
33688665--33688695	14	2.2	14	100	0	62	19	22	6	51	1.69
33691920--33691946	7	3.9	7	100	0	54	74	0	0	25	0.83
33704384--33704434	18	2.8	18	88	8	68	39	5	17	37	1.74
33705303--33705385	3	27.3	3	80	2	94	60	0	38	1	1.05
33705304--33705411	12	9.5	11	76	13	69	60	0	36	2	1.18
33711228--33711292	33	2.0	33	93	3	114	18	15	4	61	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33719605--33719661	30	1.9	30	88	0	87	43	3	1	50	1.29
33723186--33723277	30	3.1	30	96	0	175	31	20	16	31	1.95
33726006--33726051	2	23.0	2	95	0	83	0	52	0	47	1.00
33743486--33743534	2	25.0	2	95	4	91	48	0	0	51	1.00
33759823--33759861	19	2.0	19	85	5	51	48	15	10	25	1.76
33763692--33763740	2	26.5	2	80	15	61	53	0	0	46	1.00
33763687--33763741	9	6.2	9	80	4	67	56	0	0	43	0.99
33763696--33763738	11	3.9	11	84	9	61	53	0	0	46	1.00
33763684--33763742	15	4.3	15	78	20	67	57	0	0	42	0.98
33770059--33770091	15	2.1	16	88	5	50	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103