genome.fa.s5.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  40  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15025238--15025283	22	2.1	22	87	0	65	30	28	17	23	1.97
15025444--15025505	21	3.1	21	69	21	69	32	12	17	37	1.88
15025715--15027599	170	11.1	170	78	6	1629	38	15	13	32	1.87
15025715--15027412	341	5.0	339	82	6	1627	37	15	14	32	1.87
15025790--15027599	682	2.7	680	78	6	1768	38	15	13	32	1.86
15030218--15030242	13	1.9	13	100	0	50	48	8	0	44	1.32
15033524--15038551	171	29.2	170	75	7	3880	37	14	14	33	1.87
15042908--15042949	20	2.1	20	86	0	57	45	9	33	11	1.73
15043928--15043962	17	2.1	17	88	0	52	45	0	11	42	1.40
15044103--15045804	342	5.0	339	79	6	1700	37	15	14	32	1.88
15044102--15045796	170	9.9	170	81	4	1723	37	15	14	32	1.88
15048869--15048908	21	1.9	21	85	10	55	15	20	17	47	1.83
15048774--15050762	171	11.6	171	76	7	982	38	14	14	32	1.86
15048767--15050762	342	5.8	342	79	5	1827	38	14	14	33	1.86
15048752--15050762	513	3.9	515	77	6	1964	38	14	14	33	1.86
15065272--15066592	172	7.7	171	78	4	1186	36	15	14	32	1.89
15066468--15066741	149	1.8	150	80	2	336	35	17	14	32	1.90
15066609--15068283	341	4.9	341	81	5	1600	37	15	13	33	1.86
15066609--15068282	170	9.8	171	77	4	1486	37	15	13	33	1.86
15066609--15068285	511	3.3	510	77	8	1481	38	15	13	33	1.86
15070818--15071127	155	2.0	154	98	0	593	38	9	8	44	1.66
15073329--15073369	20	2.0	20	86	13	57	48	14	12	24	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15074340--15077134	171	16.4	170	77	7	2359	38	15	14	31	1.87
15074340--15077134	341	8.2	339	75	8	2181	38	15	14	31	1.87
15077458--15077759	151	2.0	150	94	0	532	26	20	17	35	1.94
15078515--15078596	43	1.9	43	82	0	101	26	21	32	18	1.97
15078613--15078663	23	2.2	23	82	0	57	29	1	35	33	1.69
15079895--15081860	171	11.5	170	77	6	1606	37	14	15	32	1.88
15079895--15094953	342	44.3	339	76	7	10834	37	14	14	33	1.87
15081743--15082022	153	1.8	153	81	2	346	36	16	15	32	1.89
15081884--15087847	171	35.0	170	77	5	4989	37	14	14	33	1.87
15088266--15091717	171	20.3	170	78	5	2938	37	13	13	34	1.85
15091714--15094973	171	19.3	170	72	11	1529	37	14	14	32	1.87
15092445--15094956	171	14.8	169	77	7	2179	37	14	14	33	1.86
15097892--15100020	343	6.2	342	76	6	1679	38	14	14	33	1.86
15097892--15100020	171	12.4	170	76	5	1723	38	14	14	33	1.86
15100086--15101726	171	9.8	169	73	10	985	33	13	13	39	1.84
15101772--15104414	171	15.5	170	79	5	2405	32	13	14	38	1.86
15101773--15104415	681	3.9	674	80	5	2618	32	13	14	38	1.86
15101773--15104415	340	7.8	340	79	5	2486	32	13	14	38	1.86
15113651--15113693	2	21.5	2	95	0	77	48	0	0	51	1.00
15113723--15113812	42	2.1	42	86	8	121	26	32	15	25	1.96
15116305--15116429	42	3.0	42	94	2	207	24	24	31	20	1.98
15142936--15142967	5	6.8	5	86	13	50	18	0	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15142936--15142967	14	2.3	14	94	0	55	18	0	0	81	0.70
15143008--15143032	11	2.3	11	100	0	50	84	0	0	16	0.63
15147959--15147983	12	2.1	12	100	0	50	64	0	0	36	0.94
15150514--15150551	19	2.0	19	94	0	67	28	0	28	42	1.56
15156678--15156737	14	4.2	14	74	16	52	70	0	21	8	1.14
15156896--15156937	9	4.8	9	82	11	52	69	0	30	0	0.89
15158844--15158886	20	2.2	20	83	8	52	34	2	9	53	1.46
15160329--15160381	20	2.6	19	80	11	61	22	3	15	58	1.53
15163433--15163897	233	2.0	231	96	0	849	24	21	16	37	1.93
15166337--15174778	171	49.7	169	78	5	7118	33	14	14	37	1.86
15166708--15174106	341	21.8	341	75	8	1200	33	14	14	37	1.86
15176112--15176136	13	1.9	13	100	0	50	48	8	0	44	1.32
15178533--15179273	371	2.0	370	99	0	1464	30	23	9	36	1.86
15179744--15179785	15	2.8	15	79	13	50	59	19	2	19	1.49
15180168--15180201	17	1.9	18	88	5	52	64	2	0	32	1.08
15182400--15182437	19	2.0	19	94	0	67	42	28	0	28	1.56
15186400--15186572	35	4.9	35	79	7	174	28	11	35	24	1.90
15186638--15186685	2	25.0	2	91	8	82	47	0	0	52	1.00
15191692--15191730	2	20.0	2	94	5	71	51	0	0	48	1.00
15191779--15191806	2	14.0	2	100	0	56	50	0	0	50	1.00
15219155--15227454	171	48.6	171	80	4	8305	33	14	15	37	1.87
15219155--15227454	341	24.3	341	80	4	8288	33	14	15	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15228555--15228579	13	1.9	13	100	0	50	48	0	0	52	1.00
15237296--15237439	42	3.4	42	80	0	135	23	19	33	23	1.97
15237286--15237439	84	1.8	84	82	0	200	22	20	33	23	1.97
15237480--15237523	2	22.0	2	90	0	70	50	2	2	45	1.27
15241052--15241111	30	2.1	30	84	6	79	41	21	5	31	1.75
15241642--15243513	171	11.0	170	82	6	2052	33	13	14	38	1.86
15241642--15243513	513	3.7	511	83	5	2278	33	13	14	38	1.86
15244210--15244250	21	1.9	21	85	5	55	53	7	21	17	1.67
15244208--15244255	21	2.3	20	75	10	51	58	6	20	14	1.58
15246514--15255408	171	51.9	170	77	6	6948	33	13	14	38	1.86
15246498--15266519	342	57.9	340	70	11	7711	33	14	14	36	1.88
15251296--15251742	233	1.9	232	81	3	531	34	14	15	35	1.89
15251808--15255157	170	19.9	156	75	9	490	33	14	14	37	1.86
15256656--15256742	42	2.2	40	89	6	131	26	32	16	25	1.96
15257994--15261390	170	19.5	171	74	10	2228	33	14	14	37	1.86
15257994--15260269	171	13.3	168	79	6	1960	33	13	14	38	1.85
15260072--15260504	234	1.9	233	82	6	554	34	14	15	35	1.88
15260295--15266464	171	36.3	169	77	8	2206	33	13	15	37	1.87
15261386--15266517	171	30.1	171	81	3	5226	32	13	15	38	1.87
15268656--15268701	19	2.4	19	82	7	58	73	6	17	2	1.14
15269024--15269171	34	4.4	34	86	3	208	31	12	23	32	1.91
15269318--15269372	25	2.2	24	77	3	56	50	16	20	12	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15271770--15271802	2	17.0	2	93	6	59	51	0	0	48	1.00
15271764--15271800	17	2.2	17	95	0	65	51	0	2	45	1.15
15285214--15286957	170	10.3	169	81	5	1835	33	14	14	37	1.86
15285214--15286965	341	5.2	342	81	6	1927	33	14	14	37	1.86
15290757--15290816	28	2.1	28	81	0	66	35	20	16	28	1.94
15291633--15291688	2	28.5	2	85	10	80	46	0	3	50	1.19
15291788--15291816	2	14.5	2	100	0	58	48	0	0	51	1.00
15291815--15291857	20	2.1	21	82	4	52	32	4	23	39	1.75
15291868--15291969	42	2.4	42	83	4	134	24	18	35	21	1.96
15294143--15299199	171	29.6	172	80	4	4707	33	13	14	37	1.86
15301600--15301659	28	2.1	30	87	6	88	40	20	8	31	1.82
15302992--15303150	54	2.9	54	92	0	273	26	40	12	20	1.88
15305148--15311505	341	18.6	339	78	5	5491	33	14	15	36	1.88
15305148--15311505	171	37.2	171	79	4	5846	33	14	15	36	1.88
15312940--15312974	16	2.2	16	89	0	52	40	2	8	48	1.49
15314335--15318114	172	22.1	171	77	6	3250	33	13	15	36	1.87
15314335--15318114	343	11.0	341	77	6	3309	33	13	15	36	1.87
15321537--15321561	10	2.5	10	100	0	50	48	0	20	32	1.50
15324066--15324111	19	2.4	20	82	10	60	54	0	2	43	1.12
15324513--15324550	20	1.9	20	100	0	76	28	5	21	44	1.73
15332996--15333020	13	1.9	13	100	0	50	44	0	8	48	1.32
15338880--15339934	171	6.3	166	74	11	799	33	14	15	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15339546--15339829	158	1.8	157	87	0	415	33	13	13	39	1.84
15342699--15344991	171	13.5	171	78	4	2237	33	13	15	36	1.88
15343744--15344040	154	1.9	154	83	2	382	30	15	17	36	1.91
15345344--15345368	12	2.1	12	100	0	50	64	0	0	36	0.94
15351024--15355096	171	24.0	170	77	5	3262	33	14	15	37	1.87
15356577--15356735	54	2.9	54	93	0	264	20	13	40	25	1.89
15361032--15361061	15	2.0	15	93	0	51	30	6	20	43	1.77
15370195--15370228	2	17.0	2	87	0	50	50	2	0	47	1.16
15371607--15372445	171	4.9	171	80	3	925	30	13	15	39	1.87
15373204--15373399	74	2.6	74	86	1	259	20	17	17	43	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103