genome.fa.s5.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  37  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13927600--13927655	20	2.8	20	86	0	76	0	26	0	73	0.84
13928181--13928246	33	2.0	33	82	5	80	48	0	0	51	1.00
13928200--13928251	19	2.7	19	100	0	104	44	0	0	55	0.99
13930426--13930459	2	17.0	2	100	0	68	50	0	0	50	1.00
13948418--13948566	67	2.2	67	84	2	192	18	11	40	29	1.85
13954336--13954455	58	2.1	57	95	1	213	37	18	9	35	1.83
13957763--13957804	21	2.0	21	95	0	75	33	16	28	21	1.95
13957721--13957839	60	2.0	60	81	6	143	26	18	22	31	1.97
13960879--13960905	2	13.5	2	100	0	54	51	0	0	48	1.00
13965070--13965107	18	2.1	19	85	5	51	47	15	5	31	1.68
13967357--13967415	26	2.3	26	79	5	66	1	28	3	66	1.18
13970256--13970397	60	2.4	59	82	9	155	58	5	30	4	1.42
13971526--13971648	43	2.9	43	83	3	135	30	15	32	21	1.94
13976206--13976304	38	2.6	38	83	4	119	22	16	38	23	1.93
13977435--13977576	29	4.9	28	82	6	167	38	9	12	38	1.77
13977435--13977598	59	2.8	58	85	3	213	37	9	11	41	1.73
13977435--13977586	28	5.3	28	80	10	155	39	9	11	39	1.74
13977749--13977781	17	1.9	17	88	11	50	39	3	15	42	1.62
13989489--13989519	7	4.6	7	92	8	55	45	38	0	16	1.47
13996411--13996516	43	2.5	43	85	0	140	19	36	17	25	1.94
14006870--14006929	23	2.6	23	89	0	84	33	38	1	26	1.67
14006926--14007048	43	2.9	43	82	2	149	20	34	18	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14009884--14010032	35	4.5	32	79	12	165	36	28	12	22	1.91
14009857--14010032	67	2.6	67	90	3	284	34	27	13	24	1.93
14009853--14010029	35	5.2	33	77	14	157	34	27	13	24	1.93
14013283--14013311	2	14.5	2	100	0	58	0	0	48	51	1.00
14013345--14013509	42	3.9	42	89	0	222	23	19	36	20	1.95
14013338--14013510	84	2.1	84	87	0	256	23	20	35	20	1.96
14013338--14013533	42	4.7	41	83	5	212	23	20	35	20	1.96
14014453--14014892	211	2.1	211	84	2	571	24	20	28	26	1.99
14017354--14017386	2	16.5	2	100	0	66	51	0	0	48	1.00
14022440--14022502	33	1.9	33	100	0	126	41	3	15	39	1.64
14025333--14025380	21	2.3	20	75	10	51	14	18	8	58	1.61
14026711--14026930	35	6.3	35	80	5	187	42	11	7	38	1.71
14026713--14026930	71	3.1	71	77	3	246	41	11	7	38	1.71
14026699--14026902	106	1.9	105	87	3	293	40	11	8	39	1.72
14033433--14033557	35	3.6	35	79	2	144	31	8	31	28	1.87
14036189--14036225	19	1.9	19	89	10	58	78	8	13	0	0.96
14036244--14036314	33	2.1	35	86	7	101	61	1	30	5	1.27
14036375--14036452	34	2.3	34	88	4	113	29	10	29	30	1.90
14043322--14043364	19	2.3	18	88	4	68	44	4	0	51	1.22
14048593--14048695	38	2.7	38	86	6	127	22	40	17	19	1.91
14048628--14048691	19	3.4	19	68	8	58	20	40	17	21	1.91
14052229--14052376	35	4.3	35	74	10	133	33	9	31	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14052585--14052638	22	2.5	22	73	11	56	37	12	9	40	1.76
14055223--14055247	13	1.9	13	100	0	50	12	48	0	40	1.40
14059120--14059282	37	4.4	37	83	6	199	30	8	34	26	1.86
14073442--14073483	21	2.0	21	85	4	57	19	26	7	47	1.74
14073494--14073551	11	5.4	11	85	4	82	0	20	12	67	1.22
14077795--14077835	21	1.9	21	85	5	55	48	9	24	17	1.76
14077794--14077842	21	2.3	21	78	3	53	53	10	20	16	1.72
14087967--14088006	21	2.0	20	90	5	62	62	10	2	25	1.39
14092160--14092200	21	1.9	22	90	5	66	51	9	21	17	1.74
14092159--14092206	21	2.2	21	81	3	60	58	8	18	14	1.61
14103848--14103985	60	2.3	60	84	0	168	32	21	20	25	1.97
14103989--14104038	22	2.3	22	92	0	82	28	26	22	24	1.99
14104392--14104481	43	2.1	43	87	0	126	21	33	20	25	1.97
14107124--14107403	43	6.6	42	82	6	282	26	19	32	22	1.97
14107124--14107362	85	2.8	85	91	3	356	26	19	31	22	1.97
14107119--14107403	85	3.3	85	86	5	319	25	20	31	21	1.98
14107413--14107499	26	3.3	26	90	0	138	26	2	37	33	1.69
14107413--14107513	52	2.0	50	84	9	132	25	1	37	34	1.68
14111971--14112153	72	2.5	73	82	5	221	40	15	18	25	1.89
14115576--14115634	21	2.8	20	80	7	55	67	3	3	25	1.21
14115596--14115634	20	1.9	21	89	5	62	71	0	0	28	0.86
14115596--14115646	18	2.6	20	84	9	61	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14119004--14119056	28	1.9	27	88	3	79	28	22	18	30	1.98
14119101--14119146	20	2.3	20	88	7	67	45	17	4	32	1.68
14127044--14127095	28	1.9	27	84	7	70	28	19	19	32	1.96
14127141--14127186	20	2.3	20	96	0	83	45	21	4	28	1.71
14135211--14135240	11	2.7	11	89	0	51	56	0	0	43	0.99
14146654--14146813	54	3.0	54	85	1	214	25	43	11	18	1.84
14146781--14146882	37	2.6	40	81	12	131	20	36	19	23	1.95
14157103--14157262	54	3.0	54	88	1	214	23	41	13	22	1.88
14165114--14165275	81	2.0	81	86	2	227	25	13	35	25	1.93
14166697--14166927	43	5.2	44	79	9	204	27	14	32	25	1.94
14166697--14166931	89	2.7	87	82	7	253	26	14	32	25	1.95
14170037--14170066	15	1.9	16	93	6	53	43	0	13	43	1.43
14172098--14172157	25	2.4	25	82	0	75	33	16	26	23	1.96
14177982--14178163	60	3.0	60	83	2	231	25	18	32	23	1.97
14182092--14182209	43	2.7	43	78	2	121	27	17	34	20	1.95
14182593--14182746	60	2.6	60	86	4	220	25	21	20	32	1.98
14184437--14184602	37	4.5	37	88	4	246	24	33	11	30	1.91
14184437--14184602	74	2.2	74	94	0	296	24	33	11	30	1.91
14186760--14186813	25	2.2	25	86	0	72	18	18	14	48	1.82
14186812--14186844	6	5.8	6	86	13	52	0	18	0	81	0.68
14186812--14186844	10	3.0	11	86	13	50	0	18	0	81	0.68
14187049--14187114	34	1.9	34	81	0	78	34	24	12	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14196565--14196611	23	2.0	23	84	8	60	31	14	12	40	1.84
14196672--14196700	2	14.5	2	100	0	58	51	48	0	0	1.00
14196760--14196840	37	2.2	37	93	4	137	25	38	8	27	1.85
14200585--14200709	42	3.0	42	93	0	214	20	22	34	22	1.97
14207879--14207936	27	2.1	28	83	6	73	39	22	13	24	1.90
14208691--14208751	30	2.0	30	96	0	113	26	16	18	39	1.91
14211617--14211782	43	3.9	43	83	4	201	23	17	37	21	1.94
14211777--14211835	3	20.7	3	77	10	52	25	1	40	32	1.66
14211768--14211830	20	3.2	20	90	2	101	25	3	41	30	1.71
14219734--14219895	43	3.8	43	87	1	209	24	19	35	21	1.96
14219894--14219956	20	3.2	20	90	2	101	25	3	41	30	1.71
14221960--14221994	13	2.7	13	95	0	61	45	14	17	22	1.84
14224876--14224926	13	4.2	13	78	12	54	35	19	15	29	1.93
14226316--14226340	13	1.9	13	100	0	50	48	8	0	44	1.32
14229573--14229639	32	2.0	33	91	5	109	37	7	11	43	1.70
14229590--14229639	18	2.9	17	77	16	59	36	10	10	44	1.72
14244079--14244131	20	2.7	20	79	5	54	39	16	7	35	1.78
14250583--14250633	20	2.5	21	84	9	70	54	1	0	43	1.11
14252384--14252427	17	2.6	17	88	0	61	27	25	22	25	2.00
14257157--14257267	43	2.6	43	86	2	152	21	18	36	23	1.94
14257159--14257280	43	2.8	42	82	7	138	22	17	38	22	1.93
14257266--14257328	20	3.2	20	86	2	92	26	3	39	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14264548--14264573	6	4.3	6	100	0	52	65	19	15	0	1.27
14279986--14280038	22	2.5	22	84	3	72	54	18	13	13	1.70
14291908--14291965	28	2.1	28	87	6	82	18	20	25	34	1.96
14297141--14297282	28	4.9	28	78	10	151	37	10	14	38	1.80
14297141--14297306	59	2.8	59	81	7	194	36	9	12	41	1.76
14297458--14297490	17	1.9	17	88	11	50	39	3	15	42	1.62
14298574--14298600	14	1.9	14	100	0	54	29	0	3	66	1.09
14301863--14301913	18	2.8	17	83	16	59	0	31	0	68	0.90
14302000--14302039	21	1.9	21	90	10	64	5	12	0	82	0.82
14302000--14302039	11	3.7	11	87	12	57	5	12	0	82	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103