genome.fa.s5.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  62  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23492112--23492155	22	2.0	22	81	0	52	31	9	18	40	1.81
23497575--23497631	28	2.0	28	90	6	89	29	17	22	29	1.97
23507836--23507867	16	1.9	17	93	6	57	28	0	31	40	1.57
23516309--23516364	19	3.2	18	75	12	62	30	12	12	44	1.79
23517480--23517593	59	1.9	59	92	0	192	50	4	18	26	1.65
23526643--23526730	27	3.3	27	81	0	104	44	11	15	28	1.81
23534207--23534279	35	2.1	35	89	0	110	30	32	10	26	1.90
23534213--23534288	35	2.2	35	82	0	89	30	36	10	22	1.88
23535547--23535588	19	2.2	19	86	0	57	38	9	33	19	1.84
23537747--23537776	2	15.0	2	100	0	60	50	0	0	50	1.00
23543522--23543581	30	2.0	30	100	0	120	46	6	13	33	1.69
23543890--23543935	24	2.0	24	91	4	76	6	21	4	67	1.32
23545266--23545415	4	37.5	4	75	0	111	42	8	6	43	1.58
23548819--23548930	30	3.7	30	79	4	109	30	9	25	34	1.88
23550555--23550582	12	2.3	12	100	0	56	35	17	25	21	1.95
23555324--23555473	63	2.4	62	83	7	178	26	16	32	25	1.96
23555534--23555569	2	18.0	2	100	0	72	50	0	0	50	1.00
23556421--23556463	2	21.5	2	100	0	86	51	0	0	48	1.00
23557081--23557122	19	2.2	19	87	8	59	35	7	35	21	1.81
23558231--23558343	60	1.9	60	84	0	154	31	18	20	29	1.96
23560901--23560983	32	2.7	32	88	5	118	39	14	18	27	1.89
23566180--23566220	21	2.0	21	90	0	64	29	29	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23572131--23572201	30	2.4	30	80	0	79	25	14	25	35	1.93
23573006--23573085	41	2.0	41	87	5	117	36	2	20	41	1.66
23576010--23576091	31	2.6	32	79	12	107	36	18	14	30	1.91
23576010--23576101	31	3.0	31	75	15	100	34	20	16	28	1.94
23576010--23576140	62	2.1	61	81	6	149	35	17	16	30	1.92
23577987--23578035	25	2.0	25	87	0	71	42	18	16	22	1.88
23592613--23592674	32	2.0	30	82	17	74	67	0	6	25	1.14
23593941--23593984	22	2.0	23	82	13	56	34	9	13	43	1.76
23596216--23596247	16	2.0	16	93	0	55	40	9	6	43	1.62
23598139--23598241	38	2.7	38	84	6	127	23	16	37	22	1.93
23601475--23601599	42	3.0	41	87	4	178	22	22	33	21	1.97
23626705--23626755	2	25.5	2	95	0	93	49	1	0	49	1.12
23627843--23627889	20	2.3	21	81	3	60	51	0	8	40	1.33
23627876--23627919	17	2.6	18	85	10	65	65	2	0	31	1.05
23627894--23627934	21	2.0	21	95	0	73	63	0	2	34	1.08
23629989--23630041	27	2.0	27	88	0	79	22	22	22	32	1.98
23635177--23635214	15	2.5	15	100	0	76	47	18	0	34	1.49
23636432--23636713	142	2.0	142	94	0	492	40	9	14	35	1.79
23637181--23637359	74	2.4	74	79	5	202	45	17	16	20	1.86
23637541--23637572	16	2.0	16	93	0	55	71	0	21	6	1.07
23639138--23639211	30	2.5	30	80	8	96	43	9	17	29	1.81
23639410--23639479	2	37.0	2	83	11	94	47	0	2	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23640787--23640834	15	3.3	15	79	2	53	47	4	2	45	1.33
23642689--23642847	73	2.2	73	81	0	174	25	16	15	42	1.87
23650180--23650221	20	2.2	19	84	16	52	30	2	26	40	1.69
23650216--23650297	37	2.2	37	93	4	139	26	9	36	26	1.88
23655324--23655424	35	3.0	33	68	13	98	39	25	11	22	1.88
23655905--23656056	73	2.1	73	92	0	250	25	17	15	41	1.89
23655913--23656085	73	2.4	73	84	3	215	26	18	15	40	1.89
23661749--23662042	44	6.7	43	82	7	242	28	17	15	38	1.90
23661794--23662027	43	5.4	42	81	8	184	28	16	16	38	1.90
23661794--23662073	87	3.2	87	80	7	282	28	16	15	39	1.89
23661793--23662080	44	6.6	44	82	5	273	27	17	15	39	1.89
23662230--23662278	3	16.3	3	91	0	62	61	8	0	30	1.25
23664622--23664665	22	2.0	22	100	0	88	50	0	13	36	1.42
23665589--23665621	2	16.5	2	100	0	66	48	0	0	51	1.00
23667822--23667884	26	2.7	23	73	11	65	69	1	26	1	1.06
23668079--23668164	31	2.8	31	82	8	106	39	15	18	26	1.90
23670911--23670980	36	1.9	36	83	11	90	35	21	10	32	1.87
23670891--23671073	89	2.0	91	82	8	223	38	18	10	32	1.85
23676745--23676786	21	2.0	21	86	9	59	26	11	4	57	1.54
23676754--23676793	21	2.0	20	85	5	53	25	20	5	50	1.68
23678428--23678595	35	4.8	35	79	2	131	34	23	13	28	1.92
23678477--23678595	35	3.4	35	83	2	141	36	23	12	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23678655--23678741	31	2.8	30	79	6	102	29	25	14	29	1.95
23679379--23679639	131	2.0	132	84	3	339	18	16	13	50	1.77
23682738--23682811	29	2.5	30	84	4	87	24	8	18	48	1.75
23685212--23685348	42	3.3	42	88	0	184	21	31	24	22	1.98
23689716--23689804	43	2.1	43	93	2	153	24	17	33	23	1.96
23690138--23690227	39	2.3	39	92	0	144	24	22	16	36	1.94
23691633--23691790	59	2.7	59	80	4	160	29	25	17	26	1.98
23698096--23698125	13	2.3	13	100	0	60	13	0	6	80	0.91
23703447--23703514	27	2.8	25	75	18	63	27	1	0	70	0.96
23703445--23703503	18	3.4	17	76	17	59	28	1	0	69	0.98
23703559--23703639	30	2.7	30	79	9	92	48	1	2	48	1.23
23713108--23713146	19	2.1	19	90	4	62	33	7	33	25	1.84
23714100--23714161	26	2.4	26	94	0	106	32	40	3	24	1.71
23714168--23714244	30	2.6	30	93	0	136	24	24	28	22	1.99
23714211--23714436	42	5.4	42	93	0	389	22	34	23	20	1.97
23726384--23726417	9	3.7	9	88	4	50	58	0	41	0	0.98
23736390--23736435	24	2.0	25	83	12	62	54	0	4	41	1.20
23736403--23736459	29	2.0	28	83	10	71	50	0	3	45	1.18
23736494--23736573	42	1.9	42	89	5	126	51	0	3	45	1.19
23739011--23739122	54	2.1	55	91	1	181	33	12	21	32	1.91
23739659--23739686	2	14.0	2	100	0	56	50	0	0	50	1.00
23741529--23741572	20	2.2	20	91	0	70	68	6	0	25	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23745190--23745254	22	2.8	22	77	15	69	21	0	1	76	0.86
23745194--23745243	16	3.1	16	80	13	66	22	0	0	78	0.76
23745192--23745243	5	9.8	5	82	17	61	23	0	0	76	0.78
23745192--23745243	17	3.3	15	82	17	61	23	0	0	76	0.78
23745407--23745535	34	3.6	34	78	9	125	27	35	8	27	1.86
23747252--23747310	30	2.0	30	93	0	100	25	13	28	32	1.94
23747948--23750051	111	18.8	112	74	10	1429	18	12	25	43	1.85
23747947--23750037	229	9.4	221	75	10	1335	18	12	25	43	1.85
23748394--23748847	112	3.9	118	77	10	449	19	11	24	45	1.82
23748872--23749262	207	1.9	207	85	0	548	20	12	26	40	1.89
23749160--23750091	118	8.1	114	81	7	943	17	12	25	44	1.84
23749832--23750123	118	2.5	118	82	2	361	16	13	26	43	1.85
23753389--23753610	78	2.8	78	90	0	336	37	18	25	18	1.93
23759492--23759516	13	1.9	13	100	0	50	48	8	0	44	1.32
23762246--23762494	49	5.2	49	67	5	195	33	25	14	26	1.94
23762205--23762452	46	5.3	46	66	5	154	33	26	14	25	1.94
23762196--23762494	95	3.1	95	93	0	508	33	26	13	26	1.94
23762676--23762736	26	2.5	23	80	17	77	59	6	13	21	1.57
23762683--23762735	26	2.0	26	96	0	97	58	7	13	20	1.59
23764590--23764748	68	2.3	69	89	3	241	22	30	16	30	1.96
23764620--23764733	24	5.0	23	74	7	106	23	28	16	30	1.96
23776096--23776128	15	2.2	15	100	0	66	18	6	48	27	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23776061--23776163	50	2.1	50	96	0	188	21	9	42	26	1.83
23776111--23776209	35	2.8	35	89	0	153	24	11	37	27	1.89
23778272--23778354	2	44.5	2	79	17	99	49	0	1	48	1.09
23778354--23778403	1	50.0	1	100	0	100	100	0	0	0	0.00
23785950--23786006	24	2.4	23	80	13	64	21	3	5	70	1.22
23785962--23786013	24	2.1	25	82	7	61	21	1	7	69	1.24
23788219--23788257	17	2.3	17	90	0	60	28	28	28	15	1.96
23789043--23789106	30	2.1	30	97	0	119	50	7	17	25	1.72
23790503--23790566	29	2.2	29	86	2	85	28	6	20	45	1.75
23795093--23795128	2	18.5	2	94	5	65	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103