genome.fa.s5.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  100  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37241446--37241503	24	2.4	23	77	8	62	60	0	5	34	1.19
37241771--37241813	14	3.1	14	86	6	61	62	0	4	32	1.15
37254296--37254336	19	2.2	19	100	0	82	31	7	14	46	1.72
37270182--37270221	19	2.1	19	90	0	62	75	0	0	25	0.81
37290249--37290336	40	2.2	40	95	0	158	42	12	11	34	1.79
37296062--37296225	72	2.3	72	90	4	267	26	24	29	20	1.99
37300959--37301013	25	2.2	25	83	6	67	61	0	1	36	1.06
37300952--37301008	29	1.9	30	82	3	71	63	0	1	35	1.05
37300920--37301021	28	3.7	29	70	14	88	54	0	1	43	1.11
37307524--37307622	48	2.0	49	94	1	173	42	11	16	30	1.82
37309242--37309276	12	3.0	12	87	4	54	71	0	28	0	0.86
37313044--37313084	2	21.5	2	85	9	59	2	43	0	53	1.13
37313044--37313089	16	3.1	14	85	11	58	2	43	0	54	1.12
37319963--37319996	2	17.0	2	88	11	52	0	47	2	50	1.16
37346271--37346418	22	6.6	23	69	18	82	51	2	2	44	1.24
37346246--37346387	44	3.2	46	68	19	122	53	2	1	42	1.21
37346243--37346397	22	7.0	23	68	17	96	54	1	1	42	1.19
37352628--37352667	2	20.0	2	100	0	80	50	0	0	50	1.00
37372491--37372555	21	3.1	21	78	8	87	50	18	3	27	1.61
37383710--37383818	24	4.7	23	72	19	75	47	2	0	48	1.22
37396025--37396114	45	2.0	45	100	0	180	33	17	26	22	1.96
37412283--37412327	23	2.0	22	83	8	56	24	0	17	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37433304--37433330	13	2.1	13	100	0	54	29	14	22	33	1.94
37454522--37454616	39	2.4	39	85	0	127	14	30	14	40	1.87
37459384--37459433	14	3.6	14	76	15	59	40	0	0	60	0.97
37459376--37459457	27	3.1	27	83	3	112	40	0	1	58	1.06
37473707--37473747	22	2.0	21	85	9	57	48	2	2	46	1.28
37473785--37473818	11	3.2	10	88	12	50	44	0	2	52	1.16
37473878--37473927	17	2.8	19	70	14	52	52	0	0	48	1.00
37473743--37473943	97	2.0	99	83	7	257	41	0	2	52	1.20
37482384--37482441	21	2.9	19	72	18	64	34	13	15	36	1.87
37490094--37490252	73	2.2	70	85	5	212	50	11	25	12	1.74
37501863--37501904	22	1.9	22	85	0	57	59	2	0	38	1.10
37539146--37539184	18	2.2	18	95	0	69	25	5	12	56	1.57
37542706--37542745	2	20.0	2	100	0	80	50	0	0	50	1.00
37543220--37543271	20	2.6	20	75	6	52	76	11	9	1	1.09
37544307--37544370	30	2.1	30	85	0	83	65	4	7	21	1.37
37552796--37552845	6	8.3	6	90	0	82	22	30	0	48	1.51
37568947--37569006	31	1.9	31	86	0	84	41	11	18	28	1.85
37584050--37584157	54	2.0	54	100	0	216	37	16	16	29	1.91
37601178--37601258	42	1.9	42	89	0	126	35	9	9	44	1.71
37601740--37601772	2	16.5	2	100	0	66	51	0	0	48	1.00
37630562--37630601	21	1.9	21	84	0	53	15	47	0	37	1.45
37631761--37631802	17	2.4	17	84	11	50	38	0	4	57	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37631743--37631816	31	2.5	31	76	10	82	44	0	5	50	1.25
37641542--37641576	12	2.9	12	86	0	52	40	17	28	14	1.88
37674918--37674975	10	5.9	10	78	15	59	72	0	0	27	0.85
37674921--37674970	18	2.9	17	80	11	57	74	0	0	26	0.83
37678523--37678792	134	2.0	134	88	4	339	38	12	20	28	1.89
37704869--37704917	21	2.3	21	96	0	89	51	8	18	22	1.72
37707420--37707471	25	2.1	25	88	0	77	32	13	25	28	1.93
37716526--37716561	2	18.5	2	94	5	65	50	0	0	50	1.00
37716639--37716675	2	19.0	2	94	5	67	48	0	0	51	1.00
37716521--37716746	114	2.0	112	99	0	434	39	11	11	36	1.78
37717962--37717992	3	10.3	3	100	0	62	67	0	32	0	0.91
37719393--37719417	2	12.5	2	100	0	50	52	0	0	48	1.00
37721798--37721853	28	2.0	29	89	3	87	35	16	14	33	1.88
37723718--37723767	24	2.1	24	100	0	100	40	12	20	28	1.87
37740526--37740571	18	2.6	18	85	0	56	47	17	13	21	1.81
37740581--37740615	11	3.2	11	91	0	52	25	2	20	51	1.61
37740573--37740615	21	2.0	22	81	4	52	30	4	18	46	1.69
37745130--37745358	78	2.9	78	95	0	404	20	20	20	38	1.93
37758330--37758428	50	2.0	50	97	0	189	32	26	17	24	1.97
37768625--37769082	179	2.5	182	91	1	742	41	20	10	27	1.85
37792747--37792805	31	1.9	31	89	6	93	45	3	1	49	1.28
37792743--37792819	31	2.5	31	74	6	84	40	2	1	55	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37812414--37812470	18	3.3	16	79	13	60	38	1	1	57	1.19
37818744--37818811	27	2.5	27	97	0	127	25	14	22	38	1.92
37821648--37821700	14	3.8	14	80	5	63	5	20	0	73	1.03
37821687--37821712	10	2.6	10	100	0	52	0	15	0	84	0.62
37822287--37822353	14	4.7	15	71	14	70	0	20	1	77	0.85
37822287--37822373	41	2.2	41	85	8	117	2	19	1	77	0.95
37822287--37822377	13	6.8	13	70	5	65	2	18	1	78	0.92
37831317--37831341	13	1.9	13	100	0	50	36	24	0	40	1.55
37833456--37835432	988	2.0	985	94	1	3447	31	15	17	35	1.91
37836727--37837060	170	2.0	170	82	2	411	32	16	13	37	1.88
37837253--37837287	15	2.2	16	95	5	63	57	5	0	37	1.23
37837252--37837321	21	3.3	21	66	15	63	51	7	0	41	1.29
37837474--37837508	15	2.2	16	95	5	63	57	5	0	37	1.23
37837473--37837542	21	3.3	21	66	15	63	51	7	0	41	1.29
37838778--37838804	14	1.9	14	100	0	54	33	7	7	51	1.58
37839339--37839436	50	2.0	50	100	0	196	39	12	14	33	1.83
37839863--37839898	18	2.0	18	88	0	54	27	27	13	30	1.94
37840879--37840903	2	12.5	2	100	0	50	52	48	0	0	1.00
37841916--37841985	21	3.3	21	76	7	79	52	2	1	42	1.24
37853019--37853066	22	2.2	22	96	3	89	35	31	16	16	1.92
37855889--37855937	19	2.6	18	75	9	53	16	24	4	55	1.59
37859722--37859758	17	2.1	19	85	10	51	75	16	0	8	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37859722--37859758	18	2.0	19	85	15	51	75	16	0	8	1.02
37861016--37861071	25	2.2	26	87	3	78	30	25	10	33	1.90
37862596--37862630	16	2.1	17	94	5	63	34	8	0	57	1.29
37862664--37862708	7	6.3	7	82	5	54	33	0	0	66	0.92
37862662--37862703	14	2.9	15	82	17	61	33	0	0	66	0.92
37862645--37862703	28	2.1	29	81	9	68	33	3	1	61	1.23
37862664--37862708	22	2.0	22	86	0	63	33	0	0	66	0.92
37862662--37862709	14	3.5	13	81	15	60	35	0	0	64	0.94
37862667--37862713	15	3.2	15	79	14	53	40	0	0	59	0.97
37869304--37869343	21	1.9	21	84	0	53	47	20	7	25	1.75
37871167--37871222	25	2.2	24	78	12	60	50	7	3	39	1.47
37873495--37873556	31	2.0	31	90	0	97	29	8	17	45	1.77
37878708--37878742	18	1.9	18	100	0	70	34	14	11	40	1.82
37883256--37883290	2	17.5	2	87	0	52	54	2	0	42	1.15
37883605--37883644	18	2.2	18	90	0	62	25	5	15	55	1.60
37883805--37883837	17	1.9	17	88	11	50	12	3	18	66	1.36
37891087--37891144	29	2.1	27	84	12	75	36	12	15	36	1.85
37904027--37904073	21	2.2	21	92	0	76	44	6	44	4	1.49
37908769--37908797	2	14.5	2	100	0	58	51	48	0	0	1.00
37913991--37914027	14	2.7	14	84	16	51	27	0	0	72	0.84
37919043--37919074	3	10.7	3	93	0	55	62	0	0	37	0.95
37919827--37919854	14	2.0	14	100	0	56	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37925485--37925521	2	19.0	2	94	5	67	0	51	0	48	1.00
37931178--37931230	27	2.0	27	88	0	79	35	22	9	32	1.86
37932196--37932227	2	16.0	2	100	0	64	50	0	50	0	1.00
37941530--37941720	95	2.0	95	95	0	346	43	9	13	33	1.77
37942419--37942461	21	2.0	22	82	13	54	48	0	6	44	1.29
37942498--37942549	22	2.4	22	81	12	54	53	1	0	44	1.11
37945471--37945517	24	2.0	23	87	4	67	38	2	2	57	1.23
37945632--37945686	20	2.8	20	80	5	67	49	0	5	45	1.25
37945665--37945767	51	2.0	51	81	10	122	44	1	4	48	1.35
37945747--37945804	29	2.0	29	83	12	75	51	3	0	44	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103