genome.fa.s5.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  50  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18817415--18817493	25	3.3	24	68	13	74	53	2	2	41	1.28
18817402--18817513	46	2.4	46	95	0	197	49	1	2	46	1.26
18817394--18817512	15	7.8	15	68	7	69	47	1	2	47	1.25
18817391--18817513	21	5.5	21	65	14	66	48	1	2	47	1.24
18817995--18818024	11	2.6	11	94	5	51	76	6	10	6	1.15
18825535--18825624	31	3.0	30	80	13	82	44	5	18	31	1.73
18828438--18828493	20	2.8	20	75	17	55	57	8	0	33	1.30
18833658--18833692	17	2.1	16	89	5	52	25	0	0	74	0.82
18834125--18834226	28	3.6	28	75	5	98	40	8	11	39	1.73
18834120--18834225	56	1.9	55	88	1	158	39	8	12	39	1.73
18834149--18834240	28	3.3	28	75	6	87	44	9	9	35	1.71
18838182--18838265	12	6.8	12	76	23	77	72	1	25	1	0.99
18838191--18838265	4	19.5	4	70	26	56	73	1	24	1	0.99
18838192--18838265	21	3.6	21	87	10	100	72	1	24	1	1.00
18838179--18838265	25	3.6	26	78	20	82	72	1	25	1	0.99
18838181--18838260	35	2.3	33	79	16	90	73	1	23	1	0.97
18838228--18838463	69	3.4	67	82	10	264	57	5	33	3	1.38
18838352--18838391	20	2.0	20	85	0	53	67	0	30	2	1.04
18839111--18839389	60	4.7	60	81	2	328	25	17	32	24	1.97
18844106--18844164	4	15.5	4	80	19	65	76	0	20	3	0.93
18844119--18844160	7	6.0	7	83	10	50	80	0	19	0	0.70
18844106--18844174	17	3.7	19	79	16	65	75	0	21	2	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18844089--18844176	14	6.1	14	72	12	70	75	1	20	3	1.02
18844118--18844177	28	2.2	28	87	3	86	76	0	23	0	0.78
18844106--18844177	10	7.3	10	76	14	69	75	0	22	2	0.94
18844141--18844371	69	3.4	69	82	6	256	58	4	33	3	1.33
18844261--18844310	16	2.8	18	82	17	68	66	0	34	0	0.92
18845023--18845260	60	4.0	60	85	2	264	25	17	31	25	1.97
18845022--18845260	120	2.0	121	84	4	313	25	17	31	25	1.97
18859701--18859781	28	2.9	29	77	5	85	25	14	16	43	1.86
18859827--18859918	26	3.6	25	75	5	78	30	15	15	39	1.88
18861081--18861106	2	13.0	2	100	0	52	50	0	0	50	1.00
18871339--18871366	2	14.0	2	100	0	56	50	0	0	50	1.00
18885470--18885560	26	3.5	26	78	3	92	25	24	24	26	2.00
18885441--18885683	27	9.1	27	73	3	116	22	22	23	32	1.98
18885632--18885693	26	2.3	26	86	2	79	24	22	22	30	1.99
18887268--18887299	2	16.0	2	100	0	64	50	0	0	50	1.00
18887605--18887655	2	25.5	2	100	0	102	49	0	0	50	1.00
18888631--18888703	26	2.8	26	74	2	74	23	17	23	35	1.95
18894484--18894575	36	2.6	36	91	0	148	23	38	16	21	1.93
18895805--18895865	22	2.8	22	94	0	104	18	29	8	44	1.78
18896631--18896672	20	2.2	19	84	16	52	30	2	26	40	1.69
18896679--18896751	37	2.0	37	94	0	128	28	9	38	23	1.86
18896666--18896738	37	1.9	38	89	8	114	27	9	39	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18897219--18897259	19	2.2	19	90	0	64	29	31	24	14	1.95
18903506--18903541	18	1.9	19	88	5	56	55	2	38	2	1.29
18918390--18918466	20	3.8	20	87	0	91	29	9	20	40	1.83
18920184--18920222	19	1.9	19	85	10	51	58	10	0	30	1.31
18923212--18923242	8	3.9	8	95	0	53	51	6	0	41	1.27
18923290--18923342	25	2.1	25	100	0	106	30	18	26	24	1.98
18927560--18927600	21	2.1	19	86	9	55	60	12	0	26	1.31
18927985--18928019	8	4.4	8	88	0	52	51	11	0	37	1.38
18929719--18930107	80	4.9	80	85	2	471	33	22	10	33	1.88
18929749--18930090	159	2.1	158	84	3	445	33	22	9	33	1.87
18931270--18931539	54	5.0	54	87	2	364	24	42	13	19	1.87
18931721--18931765	2	22.5	2	100	0	90	48	0	0	51	1.00
18939755--18939803	21	2.4	19	81	15	62	16	24	6	53	1.66
18939759--18939802	21	2.0	22	91	4	72	18	27	6	47	1.73
18940654--18940765	35	3.3	34	75	9	113	28	11	26	33	1.91
18940671--18940770	32	3.0	32	75	16	96	26	12	28	34	1.92
18940671--18940822	67	2.3	67	84	2	189	26	11	27	34	1.91
18951394--18951509	35	3.4	33	82	11	146	27	13	25	33	1.94
18951393--18951562	67	2.5	67	80	3	155	29	14	24	32	1.94
18953839--18953879	21	2.0	21	85	0	55	19	26	17	36	1.94
18956338--18956442	54	1.9	54	88	0	156	24	45	10	19	1.81
18960563--18960660	19	5.1	19	61	11	56	20	16	40	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18967239--18967304	22	3.0	22	84	4	80	33	10	18	37	1.85
18974297--18974337	20	2.0	20	95	0	73	24	0	41	34	1.55
18974827--18974924	34	2.9	33	83	8	117	28	14	23	33	1.94
18975045--18975099	22	2.6	22	88	8	80	30	14	45	9	1.76
18975105--18975165	25	2.4	25	78	10	63	77	1	18	3	0.99
18975105--18975160	12	4.6	12	73	18	53	76	1	19	1	0.96
18975105--18975165	24	2.5	24	78	10	61	77	1	18	3	0.99
18975179--18975260	25	3.3	25	87	3	103	47	14	20	17	1.82
18975223--18975285	31	2.0	33	84	6	85	49	12	20	17	1.79
18985303--18985414	43	2.6	43	87	2	154	23	17	37	21	1.94
18987560--18987725	41	4.1	41	82	10	209	27	34	13	24	1.92
18987566--18987724	82	2.0	79	88	3	237	28	34	13	23	1.92
18988343--18988391	24	2.0	24	84	7	64	67	6	22	4	1.30
19010008--19010280	47	5.8	47	87	2	379	48	11	4	36	1.58
19010008--19010270	95	2.8	94	87	1	375	48	11	4	36	1.58
19010435--19010663	47	4.9	47	89	2	345	46	12	5	35	1.64
19010435--19010663	95	2.4	94	88	2	354	46	12	5	35	1.64
19011634--19011702	15	4.7	15	68	20	56	56	2	0	40	1.14
19011633--19011706	21	3.5	21	74	3	85	54	2	0	43	1.14
19012559--19012634	39	1.9	39	97	0	143	26	1	6	65	1.24
19020061--19020101	21	1.9	22	90	5	66	29	21	24	24	1.99
19022033--19022100	34	2.0	34	94	0	118	33	23	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19022087--19022172	30	3.0	28	76	8	82	32	22	9	36	1.86
19022100--19022207	30	3.5	30	71	13	85	33	24	10	32	1.89
19022875--19022989	55	2.1	55	90	1	178	22	20	18	39	1.93
19028301--19028400	36	2.8	36	87	0	146	20	18	41	21	1.91
19032938--19033060	43	2.9	43	81	2	131	22	36	16	24	1.94
19041193--19041228	12	3.0	12	87	0	54	19	22	0	58	1.40
19046395--19046489	19	4.9	19	63	10	57	18	15	42	23	1.89
19046390--19046493	38	2.7	40	89	8	153	19	16	40	24	1.91
19063893--19063943	2	25.5	2	100	0	102	50	0	0	49	1.00
19070115--19070143	9	3.0	10	90	10	51	51	6	0	41	1.28
19073585--19073686	35	2.9	34	79	13	111	32	26	14	26	1.95
19075032--19075056	7	3.6	7	100	0	50	24	0	44	32	1.54
19075147--19075230	37	2.3	37	89	2	125	26	8	39	26	1.84
19082652--19082676	7	3.6	7	100	0	50	24	0	44	32	1.54
19082767--19082845	37	2.2	36	90	2	122	26	7	41	24	1.81
19091282--19091326	22	2.0	22	82	4	54	40	4	6	48	1.49
19091947--19091987	18	2.0	22	78	21	54	65	0	34	0	0.93
19091944--19092003	21	2.8	21	75	12	59	68	0	30	1	0.99
19115242--19115269	2	14.0	2	100	0	56	50	0	0	50	1.00
19115152--19115384	116	2.0	115	98	1	450	32	15	11	41	1.82
19115358--19115384	2	13.5	2	100	0	54	48	0	0	51	1.00
19117005--19117056	24	2.2	24	89	0	77	42	13	7	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19120877--19120945	26	2.5	28	80	17	83	49	0	7	43	1.30
19120877--19120949	27	2.7	28	78	21	84	49	0	6	43	1.29
19121154--19121183	14	2.1	15	93	6	53	36	0	6	56	1.26
19121798--19121839	22	1.9	22	90	0	66	33	0	7	59	1.25
19127815--19127857	2	21.5	2	95	0	77	0	2	48	48	1.14
19134047--19134134	42	2.1	42	86	0	122	22	29	20	27	1.99
19135904--19135945	16	2.6	16	78	10	50	61	9	2	26	1.39
19142538--19142618	19	4.2	19	74	12	83	17	16	45	20	1.85
19143354--19143398	20	2.2	21	84	11	58	57	6	20	15	1.60
19143352--19143399	21	2.3	20	76	16	53	58	6	20	14	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103