genome.fa.s5.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  95  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34926412--34926447	18	1.9	20	88	11	58	61	0	5	33	1.19
34932089--34932209	59	2.1	59	92	3	199	28	18	22	30	1.97
34933307--34933345	2	20.0	2	89	5	62	51	2	0	46	1.14
34934470--34934543	29	2.5	29	84	2	85	39	6	9	44	1.63
34934498--34934560	31	2.0	32	84	3	83	33	9	12	44	1.75
34934624--34934668	21	2.1	22	84	8	58	40	11	8	40	1.72
34946358--34946391	17	1.9	18	88	5	52	47	17	5	29	1.71
34952833--34952866	10	3.5	10	96	4	61	44	41	5	8	1.60
34953276--34953305	1	30.0	1	100	0	60	100	0	0	0	0.00
34956191--34956231	18	2.4	17	87	4	55	7	7	2	82	0.91
34960844--34960885	12	3.5	12	80	9	50	11	9	0	78	0.96
34960853--34960885	17	1.9	17	93	0	57	12	6	0	81	0.85
34964323--34964550	117	1.9	120	86	2	327	39	10	14	35	1.81
34964164--34964640	124	3.9	122	77	7	369	40	10	14	35	1.79
34964528--34964719	98	2.0	98	82	0	240	39	10	15	34	1.82
34964807--34964944	71	1.9	71	83	2	179	42	9	13	34	1.77
34970190--34970253	24	2.5	26	83	14	73	42	1	1	54	1.19
34970190--34970253	26	2.6	25	82	9	69	42	1	1	54	1.19
34973694--34973751	22	2.7	22	80	19	70	39	0	0	60	0.97
34974934--34974984	27	1.9	26	84	11	68	37	0	0	62	0.95
34974959--34974991	16	2.1	16	94	5	59	36	0	0	63	0.95
34974941--34975205	130	2.0	129	81	2	316	38	2	3	56	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34975155--34975205	19	2.7	19	76	11	52	45	0	0	54	0.99
34975146--34975217	26	2.7	26	82	4	81	47	0	0	52	1.00
34976234--34976397	83	2.0	84	87	11	239	35	14	5	43	1.69
34985428--34985528	31	3.3	31	84	0	121	56	5	6	30	1.50
34986513--34986551	20	2.0	20	85	9	55	51	0	0	48	1.00
34993229--34993306	37	2.1	37	100	0	156	25	8	25	39	1.85
35002377--35002422	24	1.9	24	86	8	67	52	0	0	47	1.00
35002397--35002434	16	2.4	16	82	8	51	47	2	0	50	1.15
35019272--35019318	23	2.0	24	83	4	60	27	12	38	21	1.90
35022749--35022778	11	2.7	11	94	0	51	36	0	3	60	1.14
35024654--35024696	21	2.0	22	86	4	61	46	2	0	51	1.13
35024708--35024744	14	2.6	15	79	12	51	40	0	0	59	0.97
35024752--35024776	12	2.1	12	100	0	50	72	0	0	28	0.86
35026547--35026700	81	1.9	81	95	0	281	42	9	10	38	1.71
35026688--35026714	14	1.9	14	100	0	54	29	18	7	44	1.77
35032400--35032477	40	2.0	40	82	5	95	20	17	41	20	1.91
35037815--35037857	21	2.0	22	86	4	61	41	0	2	55	1.12
35037963--35038000	15	2.4	16	78	13	51	52	5	7	34	1.53
35041096--35041237	22	6.6	22	72	18	95	53	0	2	43	1.17
35041125--35041254	42	3.0	41	78	11	127	51	1	2	44	1.23
35046236--35046305	29	2.4	28	81	9	86	20	27	8	44	1.80
35046525--35046549	13	1.9	13	100	0	50	20	32	0	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35057604--35057796	97	2.0	95	90	4	307	21	9	4	64	1.42
35067710--35068385	334	2.0	334	90	1	1061	32	17	26	23	1.96
35077501--35077553	24	2.2	24	83	9	65	41	3	3	50	1.38
35077630--35077666	2	19.0	2	94	5	67	51	0	0	48	1.00
35079867--35079928	33	1.9	32	96	3	115	12	11	20	54	1.68
35085734--35085814	39	2.1	39	88	0	117	25	22	14	37	1.93
35088939--35089003	2	33.0	2	84	9	89	49	1	1	47	1.20
35096657--35096681	13	1.9	13	100	0	50	24	0	4	72	1.02
35096663--35096704	19	2.2	20	87	8	61	35	0	4	59	1.19
35100755--35100789	17	2.0	17	88	5	52	42	0	0	57	0.99
35109430--35109484	26	2.1	26	100	0	110	12	27	27	32	1.93
35111328--35111399	22	3.3	22	80	3	74	13	4	29	52	1.59
35118433--35118576	78	1.9	77	88	1	216	17	35	9	38	1.81
35121924--35121949	5	5.2	5	100	0	52	0	19	0	80	0.71
35124068--35124168	53	1.9	53	93	0	175	27	16	12	42	1.85
35128871--35128906	18	2.0	18	94	0	63	30	16	2	50	1.60
35154147--35154214	31	2.2	31	89	2	102	33	4	2	58	1.33
35154487--35154530	21	2.1	21	87	8	63	68	2	0	29	1.02
35154496--35154535	20	2.0	20	85	9	55	70	0	0	30	0.88
35160354--35160403	24	2.1	24	81	7	57	38	6	26	30	1.80
35176693--35176771	29	2.7	29	76	9	79	35	3	1	59	1.24
35176668--35176746	28	2.7	29	78	9	72	39	2	0	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35183696--35183740	22	2.0	22	87	8	65	48	2	0	48	1.13
35189540--35189625	45	1.9	45	81	9	104	26	13	25	33	1.94
35196440--35196480	20	2.0	21	85	4	57	21	19	14	43	1.87
35201173--35201213	18	2.3	18	87	8	57	4	21	0	70	1.05
35201166--35201213	20	2.5	18	87	12	69	4	20	0	72	0.99
35219638--35219667	1	30.0	1	100	0	60	0	0	0	100	0.00
35219967--35220019	2	26.5	2	100	0	106	50	0	49	0	1.00
35221029--35221145	57	2.0	58	96	1	218	35	11	23	29	1.91
35230149--35230181	17	1.9	17	88	11	50	42	12	3	42	1.57
35230323--35230492	29	5.9	29	80	6	159	38	8	10	42	1.71
35242709--35242793	31	2.7	33	87	7	115	64	1	3	30	1.17
35244394--35244447	27	2.0	26	86	10	74	59	0	1	38	1.08
35244440--35244506	7	9.3	7	75	18	66	44	1	0	53	1.09
35244440--35244496	10	5.2	11	80	19	66	42	1	0	56	1.10
35244439--35244506	17	4.0	17	84	7	93	44	1	0	54	1.09
35247745--35247789	23	2.0	23	95	0	81	62	6	20	11	1.50
35254824--35254853	7	4.3	7	100	0	60	53	0	16	30	1.44
35258092--35258139	8	5.6	8	81	13	51	79	0	2	18	0.84
35258096--35258148	27	2.0	27	88	7	81	75	0	3	20	0.96
35258087--35258170	31	2.7	30	75	18	82	73	0	3	22	0.98
35259104--35259144	2	21.0	2	95	5	75	51	0	0	48	1.00
35265647--35265834	48	3.8	48	73	13	175	25	11	25	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35265841--35265872	15	2.1	15	94	0	55	31	12	15	40	1.85
35265660--35265889	103	2.2	103	87	0	327	25	11	24	38	1.89
35265660--35265913	102	2.5	103	85	0	321	24	12	24	37	1.91
35266473--35266533	30	2.0	30	90	0	95	22	14	29	32	1.94
35267908--35267974	29	2.3	29	94	0	125	46	25	8	19	1.79
35269863--35269933	35	2.1	34	81	2	79	43	0	0	56	0.99
35272199--35272337	29	4.9	27	84	11	154	39	11	12	35	1.80
35272199--35272395	57	3.4	56	84	6	216	41	11	11	36	1.76
35272199--35272397	28	7.0	28	83	8	213	41	11	11	36	1.77
35272236--35272428	58	3.3	57	82	7	212	41	9	10	37	1.73
35272238--35272428	28	6.6	29	79	12	169	42	9	10	37	1.73
35273603--35273866	131	2.0	130	82	4	316	37	9	20	32	1.85
35280766--35280790	13	1.9	13	100	0	50	44	0	8	48	1.32
35281988--35282036	15	3.3	15	85	0	62	28	2	20	48	1.60
35282073--35282124	5	10.8	5	79	8	63	40	3	19	36	1.70
35282078--35282124	19	2.5	19	96	0	85	40	4	19	36	1.71
35282078--35282132	19	2.9	19	91	0	74	38	5	21	34	1.77
35282072--35282124	19	2.5	22	73	23	58	39	5	18	35	1.75
35287061--35287085	13	1.9	13	100	0	50	44	0	8	48	1.32
35289552--35289626	21	3.6	21	87	0	105	29	17	16	37	1.91
35291599--35291720	41	3.0	41	89	4	192	33	17	18	30	1.94
35293975--35294982	505	2.0	503	96	1	1840	39	11	11	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35297850--35297940	41	2.2	41	88	1	130	39	9	26	24	1.86
35309909--35309935	7	3.9	7	100	0	54	85	0	0	14	0.61
35321687--35321732	2	23.0	2	100	0	92	50	0	0	50	1.00
35327526--35327560	17	2.1	17	94	0	61	34	11	8	45	1.71
35327531--35327568	8	4.6	8	87	6	58	36	13	7	42	1.73
35328776--35328823	17	2.9	17	81	9	55	81	0	4	14	0.84
35328776--35328825	19	2.9	17	77	19	50	80	0	4	16	0.87
35329427--35329460	16	2.1	16	88	0	50	76	0	0	23	0.79
35334769--35334825	2	28.5	2	92	7	98	49	1	0	49	1.11
35335140--35335169	15	2.0	15	93	0	51	70	0	0	30	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103