genome.fa.s5.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  86  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31767647--31767705	30	2.0	30	96	0	109	57	10	5	27	1.52
31769481--31769526	12	3.8	12	79	20	51	60	6	2	30	1.34
31769481--31769527	19	2.5	19	80	12	62	61	6	2	29	1.32
31774457--31774536	38	2.1	38	90	4	126	45	3	40	11	1.58
31780101--31780125	13	1.9	13	100	0	50	24	4	0	72	1.02
31783933--31783993	30	2.0	30	100	0	122	45	16	16	21	1.85
31788149--31788272	63	2.0	63	88	0	185	45	16	12	25	1.83
31796029--31796061	16	2.0	17	88	5	50	21	6	9	63	1.45
31796242--31796283	21	2.0	21	95	0	75	33	11	9	45	1.73
31796716--31796765	2	27.0	2	84	15	72	50	0	0	50	1.00
31796716--31796765	24	2.1	24	100	0	100	50	0	0	50	1.00
31797215--31797258	2	22.5	2	95	4	81	50	0	0	50	1.00
31797439--31797484	2	24.5	2	87	12	71	47	0	0	52	1.00
31797438--31797484	13	3.8	13	88	11	80	46	0	0	53	1.00
31797441--31797485	22	2.0	22	95	0	81	46	0	0	53	1.00
31798391--31798434	22	1.9	24	86	9	65	70	11	6	11	1.33
31800159--31800192	12	2.8	12	87	12	52	73	5	0	20	1.04
31803864--31803888	13	1.9	13	100	0	50	12	8	0	80	0.92
31809888--31809925	13	2.9	13	100	0	76	47	7	0	44	1.32
31826969--31827008	21	1.9	21	89	0	62	15	22	10	52	1.71
31827391--31827418	6	4.7	6	100	0	56	67	0	0	32	0.91
31827391--31827429	18	2.2	18	86	9	53	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31828649--31828714	33	2.0	33	87	0	96	40	10	13	34	1.79
31829713--31829779	17	3.9	17	73	16	59	59	0	0	40	0.97
31829690--31829814	35	3.5	35	73	19	100	56	0	3	40	1.15
31829684--31829850	71	2.3	71	79	13	171	57	1	2	38	1.22
31837497--31837838	170	2.0	169	98	1	675	37	7	11	44	1.67
31843608--31843664	27	2.2	25	87	9	87	54	1	0	43	1.10
31843617--31843824	27	7.1	27	67	19	87	56	2	1	39	1.21
31843435--31843825	152	2.5	152	88	1	557	55	2	2	39	1.27
31843691--31843771	42	2.0	42	87	2	119	54	2	1	41	1.21
31848709--31848737	3	9.7	3	100	0	58	68	0	0	31	0.89
31851739--31852047	152	2.0	152	93	0	528	45	19	11	23	1.82
31855089--31855211	61	2.0	61	88	3	185	48	18	13	18	1.80
31859942--31860003	32	2.0	31	90	9	101	48	3	6	40	1.45
31863545--31863577	15	2.1	16	88	5	50	63	0	0	36	0.95
31869880--31869929	25	2.0	25	92	0	82	30	18	14	38	1.89
31876722--31876825	53	2.0	51	90	3	163	25	14	24	36	1.93
31879528--31879558	2	15.5	2	100	0	62	48	0	0	51	1.00
31879657--31879683	2	13.5	2	100	0	54	48	0	0	51	1.00
31881567--31881606	20	2.0	20	85	9	55	7	15	0	77	0.98
31881816--31881873	26	2.1	27	84	6	73	77	0	15	6	0.97
31893432--31893512	34	2.4	34	100	0	162	46	0	17	35	1.48
31905521--31905597	30	2.5	31	78	14	90	27	9	2	61	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31905908--31905956	25	2.0	25	100	0	98	40	4	26	28	1.74
31907047--31907084	7	5.6	7	81	6	51	84	0	15	0	0.63
31917036--31917095	28	2.2	26	79	5	66	33	1	3	61	1.22
31920005--31920051	20	2.3	20	92	7	78	29	6	21	42	1.77
31924276--31924395	58	2.1	57	93	1	204	37	17	9	35	1.82
31925644--31926137	180	2.7	176	81	9	491	33	14	16	35	1.89
31926147--31926193	23	2.0	23	100	0	94	25	25	8	40	1.84
31928802--31928914	49	2.3	50	84	4	147	24	23	16	35	1.95
31928968--31929011	18	2.5	18	77	3	54	29	29	6	34	1.83
31933117--31933499	192	2.0	190	98	1	748	38	16	3	42	1.64
31936767--31936814	16	3.0	16	81	6	53	35	6	0	58	1.23
31936773--31936824	24	2.2	24	82	0	59	34	7	0	57	1.27
31936606--31937166	275	2.1	268	87	8	833	35	13	3	47	1.60
31937042--31937089	16	3.0	16	96	0	87	31	10	0	58	1.32
31940466--31940640	63	2.8	62	79	6	190	57	1	9	32	1.39
31942328--31942368	15	2.8	14	85	10	55	48	4	0	46	1.23
31942602--31942636	18	1.9	18	100	0	70	22	45	17	14	1.84
31942850--31943186	27	12.5	27	77	3	306	13	53	19	13	1.72
31942844--31943266	54	7.8	54	85	3	417	13	53	19	13	1.73
31942867--31943266	81	4.9	81	81	3	387	13	53	20	13	1.72
31942844--31943266	27	15.7	27	75	3	291	13	53	19	13	1.73
31944499--31944534	2	18.5	2	88	5	56	50	0	2	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31944715--31944771	28	2.1	27	83	9	71	63	5	0	31	1.17
31951877--31952010	52	2.6	52	81	4	146	37	8	15	38	1.79
31952211--31952271	23	2.7	22	80	5	77	24	4	31	39	1.77
31952273--31952337	23	2.8	23	85	0	76	24	12	30	32	1.92
31952206--31952321	61	1.9	61	81	0	142	24	7	31	36	1.84
31952385--31952435	22	2.3	22	90	6	77	37	17	11	33	1.86
31952395--31952443	22	2.2	23	85	3	64	44	20	8	26	1.79
31956030--31956084	24	2.3	24	87	3	76	67	1	27	3	1.17
31956028--31956069	12	3.6	12	78	15	52	71	0	26	2	0.98
31957723--31957793	30	2.4	30	83	6	83	46	0	2	50	1.16
31957826--31957894	16	4.2	16	78	12	68	46	0	1	52	1.09
31957942--31957983	19	2.1	21	83	12	54	50	0	0	50	1.00
31958556--31958758	52	3.9	50	74	9	160	34	25	18	22	1.96
31961345--31961593	35	7.1	35	79	3	234	36	6	13	43	1.70
31961386--31961614	71	3.2	70	78	3	269	37	7	13	41	1.73
31961548--31961574	13	2.1	13	100	0	54	37	0	7	55	1.28
31961380--31961593	107	2.0	106	86	0	293	35	7	13	43	1.71
31962571--31962679	30	3.6	31	80	14	113	18	20	2	58	1.51
31962565--31962698	31	4.4	30	76	18	118	19	20	2	58	1.50
31964361--31964433	38	1.9	38	88	0	110	38	19	13	28	1.90
31964501--31964645	72	2.0	71	87	1	209	36	20	14	28	1.92
31968461--31968493	11	2.7	13	90	9	52	15	3	0	81	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31971743--31971775	11	3.0	11	91	8	50	36	24	21	18	1.95
31975412--31975436	2	12.5	2	100	0	50	48	0	0	52	1.00
31975841--31975896	22	2.5	22	82	5	60	69	5	3	21	1.24
31982257--31982401	72	2.0	72	91	0	236	29	20	17	33	1.95
32021665--32021725	2	33.0	2	78	21	71	49	1	0	49	1.10
32021666--32021725	9	6.6	9	81	9	68	48	1	0	50	1.11
32021665--32021725	27	2.1	30	88	8	92	49	1	0	49	1.10
32025291--32025358	33	2.1	33	88	0	100	38	17	7	36	1.78
32038926--32038992	28	2.5	27	77	13	75	38	0	0	61	0.96
32038923--32039003	30	2.7	30	81	11	87	38	0	0	61	0.96
32038946--32038989	21	2.1	21	87	8	63	29	0	0	70	0.88
32038929--32038993	26	2.4	28	82	5	80	38	0	0	61	0.96
32049698--32049745	22	2.3	22	78	7	55	29	2	10	58	1.43
32050318--32050351	7	4.6	7	86	13	50	85	2	11	0	0.71
32059446--32059484	12	3.2	12	92	0	60	51	7	0	41	1.31
32059443--32059484	8	5.2	8	94	0	57	50	9	0	40	1.35
32059454--32059493	2	20.0	2	89	0	62	47	2	2	47	1.29
32059739--32059792	26	2.1	26	89	0	81	20	16	7	55	1.65
32061176--32061278	38	2.6	39	87	6	147	22	41	16	19	1.90
32061176--32061274	19	5.1	19	66	9	74	21	41	17	20	1.90
32070202--32070226	12	2.1	12	100	0	50	40	40	8	12	1.72
32075933--32075966	13	2.6	13	85	0	50	47	2	2	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32075980--32076090	35	3.1	35	85	6	152	40	9	7	42	1.66
32075998--32076119	35	3.5	35	85	6	158	41	8	9	40	1.66
32084130--32084167	20	1.9	20	84	10	51	31	7	2	57	1.41
32084516--32084588	9	8.1	9	80	6	76	31	9	17	41	1.82
32084516--32084588	27	2.7	27	84	0	101	31	9	17	41	1.82
32092714--32092745	2	16.5	2	93	6	57	50	0	0	50	1.00
32093744--32093777	14	2.4	14	90	0	50	79	0	20	0	0.73
32097898--32097930	2	16.5	2	100	0	66	0	48	0	51	1.00
32101504--32101569	2	35.0	2	83	11	86	43	0	0	56	0.99
32101504--32101580	14	5.5	15	79	13	69	45	0	1	53	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103