genome.fa.s5.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  43  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16084160--16084221	26	2.4	26	91	0	97	32	38	3	25	1.72
16084456--16084579	42	3.0	42	90	0	203	23	33	20	21	1.97
16091102--16091281	29	6.2	29	83	6	224	38	10	12	38	1.76
16096145--16096176	2	16.0	2	93	0	55	53	0	46	0	1.00
16096227--16096260	2	17.5	2	93	6	61	50	0	50	0	1.00
16096145--16096309	84	2.0	82	96	1	294	45	10	26	16	1.80
16100817--16100863	15	3.1	16	78	9	53	46	6	21	25	1.74
16103337--16103368	2	16.0	2	100	0	64	50	0	0	50	1.00
16103391--16103516	42	3.0	42	84	2	164	21	19	34	25	1.96
16110586--16110624	2	19.5	2	89	0	60	46	5	0	48	1.24
16112687--16112776	40	2.3	39	92	1	144	26	7	22	43	1.80
16115193--16115218	5	5.2	5	100	0	52	23	0	0	76	0.78
16115385--16115428	15	2.7	18	73	23	51	43	11	0	45	1.40
16116343--16116375	11	3.1	11	82	8	50	0	30	9	60	1.27
16118256--16118336	35	2.3	35	78	0	99	30	12	23	33	1.92
16122763--16122905	35	4.1	35	87	1	189	28	37	9	24	1.86
16126730--16126863	28	4.6	28	80	8	135	37	11	8	42	1.72
16126749--16126863	59	1.9	59	87	3	169	39	11	7	41	1.70
16126749--16126886	59	2.3	59	82	2	143	39	11	7	42	1.69
16130569--16130656	40	2.2	39	87	2	122	20	15	26	37	1.93
16140988--16141022	11	3.3	11	88	8	54	2	22	8	65	1.34
16145851--16145897	22	2.1	23	84	11	62	53	17	2	27	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16146023--16146099	3	25.7	3	89	0	100	33	27	0	38	1.57
16146023--16146099	18	4.3	18	93	0	118	33	27	0	38	1.57
16148081--16148153	35	2.1	35	94	0	128	28	35	6	28	1.83
16148087--16148164	35	2.2	35	86	0	102	28	39	6	25	1.80
16149416--16149453	19	2.0	19	89	0	58	42	10	31	15	1.81
16165702--16165810	43	2.5	42	80	2	128	27	20	34	17	1.95
16167785--16167819	2	17.5	2	100	0	70	48	0	0	51	1.00
16168715--16168739	12	2.1	12	100	0	50	36	0	0	64	0.94
16170408--16170460	4	13.8	4	77	15	58	0	32	0	67	0.91
16170388--16170460	31	2.4	31	93	2	121	0	30	0	69	0.88
16170401--16170452	7	7.0	7	85	8	59	0	32	0	67	0.91
16170717--16170762	21	2.2	21	84	7	58	4	26	2	67	1.21
16174138--16174203	12	5.3	12	75	18	55	0	28	3	68	1.05
16176227--16176302	21	3.6	21	83	5	91	28	15	15	39	1.89
16182146--16182271	30	4.3	28	74	7	117	38	9	11	39	1.75
16182128--16182281	28	5.2	29	73	14	120	41	9	12	35	1.77
16182146--16182270	59	2.1	59	82	4	146	39	9	12	39	1.75
16184072--16184097	6	4.3	6	100	0	52	61	0	0	38	0.96
16192265--16192307	21	2.0	21	86	8	61	27	0	9	62	1.25
16195451--16195485	18	1.9	18	88	0	52	77	0	22	0	0.78
16195707--16195739	15	2.1	16	88	5	50	69	6	24	0	1.10
16195682--16195845	69	2.4	69	80	5	179	63	6	29	1	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16195721--16195860	69	2.0	69	86	5	194	63	3	31	1	1.20
16196065--16196098	2	17.5	2	87	6	52	52	0	0	47	1.00
16196421--16196627	59	3.5	60	91	2	319	22	15	36	25	1.94
16209274--16209304	15	2.0	16	93	6	55	77	0	22	0	0.77
16209434--16209482	16	3.1	15	82	8	53	71	0	28	0	0.86
16209431--16209601	69	2.5	67	80	10	177	61	1	32	4	1.25
16210130--16210365	60	3.9	60	87	3	314	22	17	33	25	1.96
16211738--16211963	80	2.8	80	89	1	337	34	24	8	33	1.85
16213701--16213819	59	2.0	59	96	0	220	37	23	8	30	1.84
16215954--16216072	53	2.3	54	79	5	127	37	22	16	22	1.93
16221008--16221129	43	2.8	43	86	4	158	24	17	38	19	1.93
16223949--16224070	43	2.8	43	88	2	174	22	18	39	18	1.92
16224056--16224118	20	3.2	20	90	2	101	25	3	41	30	1.71
16228387--16228448	26	2.4	26	91	0	97	32	38	3	25	1.72
16228683--16228806	42	3.0	42	92	0	212	22	33	21	21	1.97
16235618--16235642	13	1.9	13	100	0	50	48	8	0	44	1.32
16238858--16238908	15	3.4	15	84	10	61	49	17	3	29	1.65
16243695--16243828	43	3.1	42	89	3	196	23	16	35	25	1.95
16247229--16247277	22	2.2	22	96	0	89	18	6	22	53	1.66
16248005--16248201	72	2.7	70	78	12	211	39	19	19	21	1.93
16262625--16262910	22	12.6	21	72	14	133	31	13	17	37	1.89
16262625--16262776	43	3.4	44	80	8	146	30	13	17	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16262687--16262843	71	2.2	71	96	1	289	31	14	18	36	1.90
16262689--16262864	71	2.5	71	92	1	273	30	14	18	36	1.90
16262828--16262927	23	4.5	22	88	3	137	33	14	17	36	1.89
16262828--16262927	45	2.2	45	89	0	146	33	14	17	36	1.89
16265002--16265144	29	4.9	28	73	13	119	37	13	9	38	1.79
16264984--16265144	59	2.7	58	82	10	175	40	13	9	36	1.77
16270656--16270917	127	2.1	127	97	0	488	33	20	9	36	1.84
16276521--16276558	20	1.9	20	100	0	76	28	5	21	44	1.73
16279703--16279744	17	2.4	18	84	4	59	76	2	21	0	0.90
16281511--16281557	20	2.3	20	88	0	76	27	2	21	48	1.61
16300705--16300767	10	6.3	10	94	0	99	50	3	1	44	1.27
16300705--16300767	4	15.8	4	91	0	99	50	3	1	44	1.27
16302469--16302642	59	2.9	58	83	5	197	39	13	9	37	1.77
16302467--16302640	29	5.9	28	79	10	168	39	13	9	38	1.76
16304623--16304764	29	4.9	28	85	6	185	38	10	13	38	1.79
16304623--16304797	59	3.0	57	83	6	215	38	10	12	38	1.77
16304623--16304774	28	5.3	28	85	7	171	38	9	12	38	1.76
16312806--16312835	15	1.9	16	93	6	53	16	0	10	73	1.09
16315441--16315488	23	2.1	23	88	0	69	25	37	14	22	1.92
16328178--16328207	15	2.0	15	93	0	51	0	10	3	86	0.67
16328458--16328499	7	6.1	7	86	13	61	30	0	0	69	0.89
16328460--16328498	17	2.5	17	84	16	57	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16329809--16329859	22	2.3	22	100	0	102	68	0	31	0	0.90
16329807--16329859	8	7.3	7	78	21	56	69	0	30	0	0.88
16330910--16330951	20	2.2	19	84	16	52	30	2	26	40	1.69
16333611--16333825	43	4.9	43	77	5	187	28	15	32	24	1.95
16333665--16333827	46	3.6	46	77	8	174	27	13	34	24	1.93
16333611--16333821	89	2.4	89	84	6	284	27	15	32	24	1.95
16334705--16334905	31	6.5	31	94	0	296	34	19	16	28	1.94
16335573--16335779	47	4.4	47	84	0	261	26	30	16	27	1.97
16335572--16335779	94	2.2	95	86	0	292	26	30	16	26	1.97
16335796--16335902	47	2.3	47	91	0	178	23	34	13	28	1.92
16335673--16335902	126	1.8	126	86	0	334	22	31	16	28	1.96
16340250--16340278	5	5.8	5	100	0	58	79	0	0	20	0.74
16340621--16340668	24	2.0	25	84	12	64	50	0	0	50	1.00
16341874--16341905	2	16.0	2	100	0	64	50	0	50	0	1.00
16344945--16345001	21	2.6	22	80	5	80	21	10	22	45	1.82
16345054--16345406	26	14.7	26	78	9	215	36	25	12	25	1.91
16345054--16345311	74	3.6	74	84	4	266	36	26	12	24	1.91
16345035--16345387	23	14.9	23	78	9	222	35	26	12	25	1.91
16345232--16345412	95	1.9	95	94	0	317	37	23	12	26	1.91
16345406--16345445	21	1.9	21	84	0	53	35	25	15	25	1.94
16345242--16345461	116	1.9	118	82	4	282	37	23	13	25	1.91
16349125--16349333	68	3.1	70	75	10	173	48	11	11	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16349125--16349378	70	3.7	68	75	8	212	49	10	12	27	1.73
16353819--16353862	11	4.3	11	78	21	51	68	9	22	0	1.18
16357385--16357430	2	23.0	2	90	0	74	2	45	0	52	1.13
16361059--16361146	30	2.9	30	83	10	117	30	11	20	37	1.88
16367383--16367453	35	2.0	36	86	2	99	9	26	22	40	1.85
16370732--16370799	21	3.0	24	70	12	79	30	11	10	47	1.74
16370749--16370822	21	3.4	21	69	10	67	32	13	13	40	1.84
16370732--16370827	45	2.1	45	94	0	165	31	11	12	44	1.78
16370671--16370888	106	2.1	106	87	3	314	30	12	16	41	1.85
16370758--16370829	22	3.2	23	66	13	60	30	11	15	43	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103