genome.fa.s5.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  30  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11307420--11307529	43	2.6	43	86	0	148	20	31	17	30	1.96
11325909--11325967	23	2.6	23	97	0	109	30	47	3	18	1.65
11328583--11328729	43	3.5	43	74	18	148	27	36	12	23	1.91
11328622--11328766	37	3.8	36	72	16	128	24	37	14	22	1.92
11328589--11328782	81	2.4	81	87	4	268	26	36	12	23	1.91
11330320--11330449	43	3.0	42	86	4	161	24	33	16	24	1.96
11334104--11334137	17	2.0	17	94	0	59	23	5	44	26	1.76
11336104--11336442	23	14.7	23	72	3	198	32	25	12	29	1.93
11336739--11336804	26	2.5	26	85	0	87	56	4	15	24	1.58
11340607--11340654	23	2.1	23	88	0	69	37	33	8	20	1.83
11340610--11340665	23	2.4	23	84	0	67	35	30	12	21	1.90
11343776--11343834	20	2.8	20	92	5	91	32	44	1	22	1.63
11343842--11343994	43	3.6	43	87	1	209	21	35	19	23	1.96
11351268--11351302	2	17.5	2	93	0	61	48	0	2	48	1.16
11351313--11351371	3	20.7	3	77	10	52	32	40	1	25	1.66
11351310--11351371	23	2.7	23	92	2	99	32	41	1	24	1.64
11351315--11351380	20	3.2	20	87	8	80	30	39	3	27	1.72
11351379--11351531	43	3.6	42	87	3	200	18	34	20	25	1.96
11352784--11352838	28	2.0	29	89	7	87	30	16	21	30	1.95
11354384--11354417	17	2.0	17	94	0	59	50	2	0	47	1.16
11356846--11356930	28	3.1	28	65	21	79	25	38	16	18	1.92
11356841--11356994	55	2.8	55	92	0	263	25	37	16	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11357825--11357858	15	2.4	14	90	5	50	67	0	29	2	1.05
11371030--11371054	13	1.9	13	100	0	50	48	8	0	44	1.32
11383894--11384045	45	3.0	53	81	15	221	20	15	39	25	1.91
11389023--11389054	16	2.0	16	93	0	55	68	15	0	15	1.21
11395849--11395909	10	5.8	10	77	9	50	60	4	4	29	1.38
11395855--11395899	11	4.3	10	83	10	54	64	2	6	26	1.30
11395855--11395909	21	2.7	20	83	8	65	61	3	5	29	1.35
11398567--11398625	26	2.3	26	79	5	66	66	3	28	1	1.18
11401945--11401988	12	3.7	12	80	19	56	0	25	0	75	0.81
11405235--11405275	14	2.6	16	81	18	50	65	0	4	29	1.13
11410918--11410957	21	1.9	21	100	0	80	37	25	15	22	1.93
11414774--11415209	221	2.0	218	96	2	802	37	19	7	34	1.80
11426809--11427031	111	2.0	111	85	1	304	33	9	23	34	1.87
11427332--11427385	17	3.1	17	84	10	72	25	1	1	70	1.07
11427332--11427377	19	2.6	18	89	6	67	26	2	2	69	1.11
11431163--11431317	68	2.3	67	81	8	163	36	10	19	34	1.86
11443974--11444011	19	2.0	19	94	0	67	28	0	28	42	1.56
11447027--11447103	31	2.5	30	91	4	118	27	20	32	19	1.97
11450309--11450350	19	2.3	18	88	8	59	28	0	2	69	1.01
11455836--11455950	34	3.4	34	92	1	176	33	24	10	32	1.89
11456499--11456536	19	2.0	20	85	15	53	31	2	0	65	1.06
11461132--11461166	18	2.0	18	88	5	54	34	11	17	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11466944--11466997	22	2.5	22	100	0	108	46	20	0	33	1.51
11468889--11468924	17	2.1	17	100	0	72	27	11	25	36	1.90
11471543--11471595	18	2.7	19	83	11	72	18	5	0	75	0.99
11472531--11472592	28	2.1	29	82	5	72	29	4	24	41	1.75
11472874--11472899	8	3.2	8	100	0	52	61	11	15	11	1.57
11478204--11478246	20	2.2	20	83	8	52	23	4	6	65	1.37
11481540--11481577	19	2.1	18	95	5	67	52	0	0	47	1.00
11484211--11484268	21	2.8	21	75	0	53	32	24	22	20	1.98
11487070--11487129	25	2.4	25	88	0	84	25	15	33	26	1.95
11487744--11487781	19	2.0	20	89	5	60	13	28	13	44	1.81
11488625--11488786	43	3.8	42	81	4	166	22	19	33	24	1.97
11488618--11488773	42	3.7	42	83	5	197	21	21	33	23	1.97
11491672--11491933	29	9.1	29	81	6	300	35	14	12	37	1.83
11491672--11491933	57	4.6	57	81	4	312	35	14	12	37	1.83
11491682--11491936	86	3.0	85	85	4	298	35	14	12	37	1.84
11493881--11494089	55	3.8	55	85	0	265	22	14	33	29	1.94
11493971--11494057	27	3.2	27	65	20	72	26	16	31	26	1.96
11501317--11501525	55	3.8	55	87	0	292	21	15	35	27	1.94
11503196--11503236	21	1.9	22	90	5	66	43	14	12	29	1.82
11504211--11504326	35	3.3	35	91	0	169	28	36	10	25	1.89
11507728--11507764	19	1.9	19	89	10	58	70	2	24	2	1.14
11510702--11510769	19	3.6	19	70	7	66	22	16	39	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11510706--11510804	38	2.5	40	90	3	148	20	17	40	22	1.91
11513443--11513565	42	2.9	42	90	2	185	23	33	21	21	1.97
11519602--11519720	43	2.8	43	88	2	159	22	18	36	21	1.95
11519619--11519733	43	2.7	43	82	2	133	25	18	37	19	1.94
11521488--11521537	21	2.4	21	93	3	84	40	16	6	38	1.73
11521583--11521685	39	2.8	35	81	11	125	29	32	10	28	1.90
11521626--11521701	35	2.2	35	85	0	98	28	38	6	26	1.81
11534025--11534055	15	2.1	15	100	0	62	19	48	19	12	1.81
11543308--11543339	2	16.0	2	100	0	64	50	0	0	50	1.00
11548923--11548958	15	2.4	15	90	0	54	30	0	16	52	1.44
11548993--11549025	14	2.3	15	94	5	59	39	0	21	39	1.53
11548994--11549033	19	2.1	19	90	0	62	35	2	25	37	1.69
11548993--11549025	5	6.8	5	93	6	59	39	0	21	39	1.53
11554465--11554489	13	1.9	13	100	0	50	44	0	8	48	1.32
11555914--11556130	109	2.0	108	97	0	398	40	16	5	37	1.71
11557300--11557359	28	2.1	30	84	6	79	41	23	5	30	1.75
11557815--11557950	72	1.9	72	83	3	175	35	15	19	30	1.92
11559825--11559962	55	2.5	55	80	5	145	30	39	10	18	1.85
11566507--11566591	33	2.6	33	94	0	152	31	11	24	31	1.91
11566761--11566823	5	12.8	5	94	1	101	79	0	20	0	0.73
11569035--11569071	19	1.9	19	89	10	58	70	2	24	2	1.14
11572294--11572334	21	1.9	21	85	5	55	53	7	21	17	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11572293--11572340	21	2.2	21	77	3	51	60	6	18	14	1.55
11577161--11577225	28	2.3	29	87	10	91	38	9	10	41	1.72
11583510--11583542	14	2.5	13	90	9	50	42	0	0	57	0.98
11583509--11583554	15	3.2	14	82	17	51	50	0	0	50	1.00
11583652--11583711	20	3.0	20	82	0	75	16	26	28	28	1.97
11588027--11588089	28	2.2	28	88	5	92	34	9	11	44	1.73
11606171--11606246	39	1.9	39	97	0	143	34	10	19	35	1.86
11614936--11615054	43	2.8	43	89	2	177	21	21	37	19	1.94
11614946--11615067	43	2.8	43	88	2	174	22	18	39	18	1.92
11615053--11615115	20	3.2	20	90	2	101	25	3	41	30	1.71
11624984--11625251	73	3.7	73	82	1	277	40	17	19	22	1.91
11625640--11625753	35	3.3	35	72	11	110	25	11	25	37	1.89
11629486--11629528	21	2.0	21	95	0	77	51	9	25	13	1.71
11631563--11631721	59	2.7	58	85	6	205	38	9	11	39	1.75
11631563--11631710	29	5.1	27	82	11	161	40	9	12	37	1.75
11633053--11633251	55	3.7	55	80	7	216	25	37	16	21	1.93
11636111--11636190	40	2.0	40	100	0	160	32	10	22	35	1.87
11637238--11637342	41	2.6	41	84	3	131	24	36	14	24	1.93
11637562--11637594	2	16.5	2	100	0	66	48	0	0	51	1.00
11638174--11638217	22	2.0	22	86	8	63	31	20	6	40	1.79
11646258--11646295	19	2.0	19	94	0	67	28	0	28	42	1.56
11654002--11654126	43	2.9	43	83	7	139	27	16	32	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11659467--11659520	28	2.0	27	85	3	72	27	18	18	35	1.94
11659563--11659600	19	2.0	19	94	0	67	44	28	0	26	1.54
11670472--11670509	19	2.0	19	94	0	67	39	31	0	28	1.57
11670546--11670595	26	1.9	26	84	8	66	26	24	20	30	1.98
11676344--11676383	19	2.2	19	86	4	55	50	0	5	45	1.23
11677268--11677408	60	2.5	56	80	10	160	58	6	30	4	1.42
11677261--11677423	60	2.8	60	81	9	146	57	6	31	4	1.44
11678632--11678671	2	20.0	2	94	0	71	50	2	0	47	1.14
11678712--11678821	43	2.6	43	89	0	157	21	33	17	27	1.96
11681025--11681317	149	2.0	149	95	3	529	36	12	19	31	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103