genome.fa.s5.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  12  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4635647--4635720	35	2.1	34	85	7	96	60	13	0	25	1.33
4635934--4635977	15	3.1	14	84	9	54	50	2	6	40	1.42
4635934--4635970	15	2.5	15	86	0	56	48	2	5	43	1.40
4637156--4637204	14	3.5	14	79	17	57	61	0	0	38	0.96
4637158--4637202	22	2.1	21	87	4	63	64	0	0	35	0.94
4637163--4637204	15	2.9	15	80	16	52	64	0	0	35	0.94
4637157--4637210	15	3.8	14	75	24	51	61	0	1	37	1.07
4637237--4637270	17	2.1	17	94	5	61	55	0	8	35	1.31
4637672--4637696	2	12.5	2	100	0	50	52	0	0	48	1.00
4649252--4649288	20	2.0	20	84	10	51	27	21	5	45	1.73
4650837--4650888	2	28.5	2	78	18	60	48	0	0	51	1.00
4650837--4650888	15	3.3	15	86	5	68	48	0	0	51	1.00
4650831--4650882	15	4.1	13	79	18	56	48	0	0	51	1.00
4650837--4650887	13	3.6	14	84	15	61	47	0	0	52	1.00
4650838--4650888	17	2.9	18	82	8	70	47	0	0	52	1.00
4650891--4651469	287	2.0	286	86	5	803	40	6	8	44	1.61
4655332--4655424	47	2.0	47	87	8	136	25	11	33	29	1.91
4655370--4655481	58	1.9	58	88	0	170	25	13	29	31	1.94
4655477--4655642	47	3.5	47	81	4	192	26	17	28	27	1.98
4656322--4656552	31	7.5	31	87	0	302	26	17	17	38	1.91
4656348--4656396	15	3.2	15	71	5	53	30	18	18	32	1.95
4657941--4658294	145	2.4	144	80	6	394	30	20	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4660349--4660823	118	4.0	117	84	3	571	29	28	18	23	1.98
4660349--4660823	236	2.0	235	85	3	643	29	28	18	23	1.98
4664616--4664779	31	5.3	31	88	0	229	39	15	14	30	1.87
4672992--4673031	21	1.9	21	85	10	55	17	12	2	67	1.33
4675810--4675866	28	2.0	28	96	0	105	17	15	15	50	1.78
4679758--4679863	36	2.9	36	91	4	167	33	16	35	14	1.88
4681382--4681447	25	2.7	25	83	2	98	24	15	22	37	1.92
4688915--4688946	2	16.0	2	100	0	64	50	0	0	50	1.00
4693242--4693622	81	5.1	72	69	18	287	37	13	8	40	1.75
4693434--4693649	81	2.7	81	86	3	292	37	13	8	41	1.75
4693227--4693797	227	2.6	224	85	7	758	37	13	7	41	1.74
4693538--4693843	142	2.1	142	86	6	422	36	14	7	41	1.73
4693607--4693728	62	2.0	61	85	6	165	36	13	7	42	1.73
4694068--4694230	82	2.0	84	86	4	233	42	10	3	43	1.54
4694479--4694533	28	1.9	29	85	3	76	56	10	3	29	1.51
4698411--4698463	10	5.4	10	82	13	65	75	0	0	24	0.80
4698401--4698467	14	4.6	14	80	12	73	76	0	0	23	0.79
4712624--4713150	171	3.0	178	82	6	646	38	19	12	29	1.89
4713136--4713168	2	16.0	2	93	6	57	48	3	0	48	1.17
4713242--4713282	2	20.5	2	100	0	82	48	0	0	51	1.00
4728968--4729019	23	2.2	23	86	3	68	51	0	1	46	1.12
4735828--4735901	30	2.4	31	86	2	96	40	0	4	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4737852--4737885	13	2.7	13	86	4	52	11	0	5	82	0.83
4754801--4754839	20	2.0	21	85	10	55	28	2	2	66	1.18
4754811--4754901	7	12.7	7	71	13	60	24	3	0	72	0.99
4754811--4754901	15	6.4	13	77	14	74	24	3	0	72	0.99
4754811--4754898	28	3.0	29	80	14	110	23	3	0	72	0.99
4756297--4756427	57	2.3	58	93	2	219	8	45	12	34	1.72
4756446--4756489	8	4.7	10	76	23	51	11	0	18	70	1.16
4756803--4756839	6	6.3	6	90	9	51	16	0	0	83	0.64
4756804--4756893	11	8.0	11	70	15	51	20	2	3	74	1.07
4757017--4757464	37	11.9	37	86	5	524	45	17	12	25	1.83
4757017--4757464	75	6.0	74	84	4	524	45	17	12	25	1.83
4757506--4757583	26	3.2	26	70	17	85	32	12	33	21	1.91
4757506--4757609	47	2.2	47	94	0	181	31	14	29	24	1.94
4769715--4769801	14	6.2	13	75	16	75	25	3	0	71	1.02
4769715--4769767	11	4.8	11	77	9	63	28	1	0	69	0.99
4769706--4769818	7	16.7	6	70	21	57	24	3	0	70	1.08
4769728--4769815	28	3.0	29	82	11	101	22	4	0	72	1.02
4771187--4771330	59	2.4	62	89	5	224	8	43	12	35	1.73
4771707--4771733	10	2.7	10	100	0	54	7	0	0	92	0.38
4776308--4776382	33	2.3	33	85	0	105	37	12	9	41	1.74
4785970--4786035	2	34.0	2	92	6	109	46	0	0	51	1.01
4792597--4792639	22	1.9	23	95	4	79	65	13	2	18	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4799428--4799467	21	1.9	21	89	0	62	30	27	2	40	1.70
4808602--4808628	14	1.9	14	100	0	54	59	11	0	29	1.32
4809707--4809761	25	2.2	26	83	9	69	70	5	1	21	1.16
4809741--4809791	20	2.8	18	78	16	52	62	15	0	21	1.32
4817048--4817074	14	1.9	14	100	0	54	59	11	0	29	1.32
4830801--4830926	57	2.2	57	86	0	180	33	9	31	25	1.88
4830831--4830961	57	2.3	57	79	7	140	33	14	25	26	1.94
4831254--4831295	21	2.0	22	85	4	59	42	9	11	35	1.74
4833151--4833177	2	13.5	2	100	0	54	51	48	0	0	1.00
4833177--4833222	2	23.0	2	100	0	92	50	0	0	50	1.00
4834040--4834074	2	17.5	2	100	0	70	48	0	0	51	1.00
4834418--4834457	21	1.9	21	94	0	71	37	12	7	42	1.71
4837015--4837117	52	2.0	52	90	0	161	38	15	15	30	1.89
4839144--4839310	42	4.0	42	88	0	208	23	21	31	22	1.98
4839351--4839463	2	56.0	2	96	1	208	49	0	0	48	1.07
4842212--4842251	21	1.9	21	94	0	71	37	7	25	30	1.83
4842248--4842456	101	2.1	101	87	0	292	41	17	12	28	1.85
4847840--4847865	2	13.0	2	100	0	52	50	0	50	0	1.00
4847916--4847942	2	13.5	2	100	0	54	48	0	51	0	1.00
4850325--4850369	17	2.7	16	83	10	54	42	4	15	37	1.67
4872598--4872650	28	1.9	27	88	3	79	26	18	20	33	1.96
4872695--4872740	20	2.3	20	88	7	67	45	17	4	32	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4880733--4880772	20	2.0	20	95	0	71	45	22	5	27	1.73
4882678--4882724	15	2.9	17	75	15	55	48	0	8	42	1.33
4896276--4896322	23	2.0	23	95	0	85	29	29	14	25	1.95
4896280--4896334	23	2.4	23	87	0	74	29	29	20	21	1.98
4897547--4897571	13	1.9	13	100	0	50	40	0	4	56	1.18
4912167--4912319	43	3.6	43	82	0	126	22	33	17	26	1.96
4917294--4917336	22	2.0	22	85	0	59	32	11	20	34	1.89
4923714--4923758	23	2.0	23	86	8	65	28	15	22	33	1.95
4933754--4933828	28	2.7	27	85	8	96	26	17	9	46	1.78
4934112--4934255	28	5.1	27	76	6	119	25	18	8	47	1.77
4937967--4938005	18	2.2	18	100	0	78	33	5	0	61	1.18
4957116--4957166	27	2.0	26	81	14	61	27	19	19	33	1.96
4960159--4960191	2	17.0	2	87	6	50	48	3	0	48	1.17
4960306--4960343	2	19.0	2	100	0	76	50	0	0	50	1.00
4960365--4960403	2	19.5	2	100	0	78	48	0	0	51	1.00
4962737--4963073	175	1.9	173	90	1	530	41	16	10	32	1.81
4967924--4967950	8	3.4	8	100	0	54	51	14	11	22	1.73
4968475--4968947	180	2.6	178	80	7	483	36	15	12	34	1.86
4970178--4970296	58	2.1	58	88	1	177	36	9	15	38	1.80
4972183--4972228	22	2.1	22	100	0	92	39	13	13	34	1.83
4978448--4978494	22	2.1	23	84	4	60	51	12	4	31	1.59
4978620--4978648	3	9.7	3	100	0	58	34	31	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4980149--4980321	89	1.9	89	91	2	283	33	9	34	22	1.86
4985051--4985094	2	22.0	2	100	0	88	50	0	0	50	1.00
5013848--5014009	83	1.9	84	81	6	195	43	8	6	41	1.60
5022575--5022604	10	3.0	10	95	0	51	13	0	0	86	0.57
5026764--5026788	4	6.2	4	100	0	50	48	0	0	52	1.00
5029279--5029332	2	27.0	2	88	0	81	50	5	0	44	1.25
5032520--5032850	28	12.2	28	76	6	200	38	14	9	37	1.79
5032551--5032873	55	5.9	55	76	6	235	39	13	9	37	1.77
5032579--5032873	27	10.8	27	75	7	179	39	13	9	37	1.77
5032550--5032873	82	4.0	81	79	3	301	39	13	9	37	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103