genome.fa.s5.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  33  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12400638--12400662	2	12.5	2	100	0	50	48	0	0	52	1.00
12403967--12404065	42	2.4	42	87	0	144	21	23	31	24	1.98
12413383--12413461	40	2.0	39	92	0	122	36	7	31	22	1.82
12419992--12420053	24	2.5	24	86	5	79	72	0	19	8	1.09
12420006--12420052	16	2.9	16	77	17	53	74	0	17	8	1.05
12420109--12420159	24	2.1	24	82	7	59	66	5	3	23	1.30
12422279--12422471	90	2.1	89	84	8	239	27	10	17	43	1.83
12422650--12422768	59	2.0	60	85	4	161	35	20	15	29	1.93
12422822--12422898	26	3.0	26	94	0	127	38	14	18	28	1.89
12422885--12422935	18	2.8	18	81	3	66	41	21	21	15	1.90
12422915--12422995	28	2.9	28	79	1	81	41	18	14	24	1.88
12430815--12430844	2	15.0	2	100	0	60	50	0	50	0	1.00
12437004--12437038	18	1.9	18	88	0	52	62	5	5	25	1.40
12441548--12441649	49	2.1	49	83	3	125	24	9	27	38	1.87
12441707--12441945	81	3.0	81	82	4	252	16	13	33	35	1.89
12444066--12444175	38	2.9	38	80	12	127	22	16	37	23	1.94
12450606--12450646	20	2.0	20	86	9	57	39	9	12	39	1.76
12455219--12455259	20	2.0	20	86	13	57	48	19	12	19	1.80
12455321--12455367	22	2.0	24	84	15	64	19	25	6	48	1.72
12463189--12463229	20	2.0	20	86	13	57	48	19	12	19	1.80
12463291--12463337	22	2.0	24	84	15	64	19	27	6	46	1.74
12470656--12470774	43	2.8	43	80	2	123	23	17	36	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12471144--12471274	60	2.2	60	86	2	174	21	20	22	35	1.96
12472723--12472750	11	2.5	11	100	0	56	53	14	0	32	1.41
12482641--12482686	21	2.2	20	81	11	56	47	10	26	15	1.78
12483056--12483118	3	21.7	3	75	18	53	34	39	1	23	1.65
12483054--12483121	23	3.0	23	91	4	102	33	42	1	22	1.62
12483113--12483244	43	3.1	43	82	0	138	21	36	18	24	1.95
12487569--12487631	20	3.2	20	90	2	101	30	41	3	25	1.71
12492391--12492440	20	2.5	20	93	0	82	38	10	36	16	1.82
12492880--12493156	138	2.0	137	97	0	527	33	18	14	33	1.90
12495946--12495971	13	2.0	13	100	0	52	38	0	7	53	1.30
12496072--12496215	36	4.1	36	84	2	186	30	31	11	25	1.92
12496219--12496312	36	2.6	36	89	0	116	27	44	10	17	1.81
12509092--12509194	38	2.6	39	84	4	127	20	35	19	24	1.95
12509127--12509190	19	3.4	19	68	8	58	18	40	18	21	1.91
12509311--12509343	2	16.5	2	100	0	66	51	0	0	48	1.00
12513661--12513824	77	2.1	77	92	4	269	41	8	10	39	1.70
12514034--12514077	22	2.0	22	95	0	79	50	11	18	20	1.77
12518436--12518495	30	2.1	29	81	6	68	30	8	23	38	1.84
12528037--12528092	29	1.9	29	96	0	103	23	39	14	23	1.91
12529255--12529283	9	3.0	10	90	10	51	51	6	0	41	1.28
12534753--12534792	5	8.0	5	97	0	71	40	22	0	37	1.54
12534753--12534798	15	3.1	15	90	0	56	36	21	4	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12534834--12534879	15	3.1	15	90	0	74	56	15	2	26	1.50
12536270--12536294	13	1.9	13	100	0	50	48	8	0	44	1.32
12538519--12538630	39	3.0	36	82	11	111	27	33	14	24	1.94
12538556--12538651	39	2.5	39	89	0	138	25	35	15	23	1.94
12539540--12539582	20	2.2	20	84	8	54	76	0	23	0	0.78
12542836--12542945	35	3.2	34	70	7	89	24	7	27	40	1.81
12543215--12543244	11	2.7	11	89	0	51	56	0	0	43	0.99
12546330--12546370	11	3.7	11	93	0	55	29	2	21	46	1.64
12546400--12546439	5	8.0	5	91	0	62	40	0	22	37	1.54
12556523--12556566	18	2.4	17	85	11	52	70	0	29	0	0.88
12557813--12557849	2	18.5	2	94	0	65	48	2	0	48	1.15
12560617--12560690	21	3.5	21	94	0	130	18	24	24	32	1.97
12561670--12561712	21	2.0	21	90	0	68	23	25	20	30	1.99
12562235--12562340	38	2.7	39	84	7	135	23	38	16	21	1.92
12563977--12564030	26	2.1	25	83	16	67	31	18	7	42	1.78
12570579--12570633	21	2.6	21	88	0	83	20	27	23	29	1.99
12573026--12573138	54	2.1	54	93	0	190	21	12	39	26	1.88
12573926--12574051	62	2.0	62	92	0	207	25	22	16	35	1.95
12587371--12587488	35	3.5	35	80	8	145	28	9	27	33	1.88
12587345--12587481	67	2.0	67	88	2	204	26	9	27	37	1.87
12597892--12598068	77	2.3	77	84	6	227	38	9	12	38	1.76
12603561--12603651	42	2.2	42	96	4	166	24	34	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12605715--12605853	35	4.0	35	86	0	161	32	11	31	24	1.91
12618578--12618615	19	2.0	19	94	0	67	28	0	28	42	1.56
12629176--12629213	19	2.0	19	100	0	76	31	0	26	42	1.56
12635225--12635374	54	2.8	53	87	2	210	28	38	12	20	1.89
12635489--12635513	2	12.5	2	100	0	50	48	0	0	52	1.00
12635490--12635666	88	2.0	87	95	4	329	42	18	2	36	1.63
12655054--12655091	19	2.0	19	94	0	67	42	28	0	28	1.56
12665990--12666202	54	3.9	54	88	1	320	26	39	13	20	1.89
12680190--12680232	22	2.0	22	90	0	68	34	18	11	34	1.87
12680346--12680475	36	3.6	36	80	2	127	30	37	11	20	1.88
12682003--12682108	40	2.6	41	83	7	137	31	17	26	24	1.97
12682368--12682540	42	4.1	42	84	3	213	26	33	15	25	1.95
12682368--12682540	84	2.0	85	86	3	242	26	33	15	25	1.95
12699379--12699470	4	23.8	4	70	12	59	3	28	0	68	1.05
12699379--12699453	20	3.6	20	85	5	87	2	29	0	68	1.04
12699407--12699480	28	2.7	28	91	6	116	2	31	0	66	1.06
12699435--12699479	20	2.2	20	84	0	63	2	33	0	64	1.06
12699803--12699844	20	2.1	20	100	0	84	45	16	4	33	1.69
12703952--12703994	22	2.0	21	95	0	68	27	25	16	27	1.96
12704822--12704863	8	5.2	8	91	0	57	47	9	0	42	1.36
12704832--12704862	2	15.5	2	93	0	53	51	3	0	45	1.17
12704908--12705017	43	2.6	43	81	5	107	19	36	19	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12705813--12705850	19	2.0	20	89	5	60	39	15	23	21	1.92
12706248--12706385	34	3.8	38	70	17	105	21	14	36	28	1.92
12706248--12706425	73	2.4	73	89	0	266	22	14	33	29	1.94
12711917--12712000	40	2.1	40	86	4	116	20	23	22	33	1.97
12712340--12712430	38	2.4	38	81	0	119	25	30	5	38	1.78
12716509--12716628	37	3.2	37	88	4	172	25	36	9	29	1.87
12718540--12718635	42	2.3	42	73	7	95	25	33	18	22	1.97
12723304--12723485	83	2.2	83	92	0	301	24	11	34	29	1.91
12723344--12723490	44	3.5	44	72	16	164	24	10	34	30	1.89
12724894--12724938	23	2.0	23	100	0	90	57	11	17	13	1.64
12739833--12739942	35	3.2	34	71	17	111	33	27	12	26	1.93
12739837--12740012	67	2.6	67	86	7	259	35	25	13	25	1.93
12739864--12739992	32	3.9	34	77	9	131	35	25	12	26	1.91
12739847--12740009	35	4.9	33	73	10	127	34	24	14	25	1.94
12741014--12741041	14	2.0	14	100	0	56	42	7	14	35	1.73
12748113--12748153	20	2.1	20	86	4	57	34	17	12	36	1.87
12753820--12753929	31	3.4	32	77	14	134	34	29	13	22	1.93
12753819--12753967	66	2.2	67	90	2	246	36	27	13	22	1.92
12759928--12759966	17	2.3	17	82	13	53	61	2	5	30	1.31
12760438--12760497	25	2.4	25	86	5	86	23	26	16	33	1.96
12770214--12770271	28	2.1	28	84	9	75	24	20	22	32	1.98
12770325--12770362	20	1.9	20	100	0	76	44	21	5	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12787598--12787643	20	2.3	20	96	0	83	28	4	21	45	1.71
12792864--12792900	19	1.9	19	100	0	74	27	0	29	43	1.55
12800430--12800495	31	2.1	33	88	5	100	16	21	12	50	1.77
12800458--12800517	25	2.4	25	94	0	102	15	21	13	50	1.78
12800428--12800523	31	3.3	30	75	19	85	14	20	12	52	1.74
12800725--12800801	34	2.3	33	80	6	82	33	25	10	29	1.89
12812170--12812213	22	2.0	23	86	4	63	13	27	6	52	1.66
12833915--12834096	39	4.6	39	77	11	129	26	37	12	23	1.90
12833960--12834083	44	3.0	43	80	7	139	26	36	12	25	1.91
12834991--12835036	20	2.3	21	85	11	69	71	0	28	0	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103