genome.fa.s5.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  52  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19522954--19523072	43	2.8	43	89	2	168	19	37	21	21	1.94
19526266--19526355	37	2.4	36	89	5	135	20	17	38	23	1.93
19526265--19526390	36	3.4	36	82	5	137	20	18	38	23	1.94
19529190--19529231	20	2.1	20	86	0	57	50	11	19	19	1.78
19532778--19532939	55	2.9	56	83	4	222	30	37	12	19	1.90
19541246--19541351	43	2.5	43	81	6	126	22	35	16	24	1.95
19542978--19543332	176	2.0	176	95	0	638	31	12	17	38	1.87
19554165--19554258	48	2.0	48	91	0	152	27	25	26	20	1.99
19554510--19554632	36	3.4	36	86	0	183	25	39	15	19	1.91
19556735--19556789	28	2.0	28	89	7	85	21	3	14	60	1.50
19565313--19565448	43	3.2	43	81	6	159	27	16	31	23	1.96
19565735--19565794	22	2.7	22	84	0	75	33	21	21	23	1.97
19572749--19572802	21	2.6	21	75	18	51	29	1	24	44	1.64
19572799--19572934	43	3.2	43	86	4	141	27	18	32	21	1.97
19572830--19572934	43	2.4	43	91	0	165	29	19	31	20	1.96
19585597--19585645	25	2.0	25	84	8	64	28	8	4	59	1.45
19587071--19587335	73	3.6	73	80	4	257	37	16	21	23	1.93
19587714--19587844	35	3.8	35	74	9	135	25	12	25	35	1.91
19587709--19587844	67	2.0	67	92	2	229	25	11	25	37	1.90
19587709--19587809	32	3.1	32	75	8	112	23	11	24	39	1.89
19596497--19596802	29	10.7	28	84	4	337	39	9	12	38	1.76
19609311--19609345	11	3.3	11	84	8	54	22	0	8	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19623440--19623465	13	2.0	13	100	0	52	46	0	7	46	1.31
19626619--19626664	21	2.2	21	85	14	69	63	8	0	28	1.24
19633673--19633749	36	2.1	36	82	0	91	31	16	25	25	1.97
19638057--19638171	37	3.1	37	92	5	196	24	35	10	29	1.89
19658024--19658438	220	1.9	220	88	2	636	23	27	21	26	1.99
19664148--19664270	43	2.9	43	79	2	131	21	34	16	27	1.95
19667924--19668059	69	2.0	68	82	4	166	26	19	21	32	1.97
19669850--19669888	19	2.1	19	90	0	60	58	0	0	41	0.98
19685556--19685612	5	11.6	5	90	5	73	0	22	0	77	0.77
19685547--19685609	10	6.6	10	82	7	60	0	23	0	76	0.79
19685772--19685851	34	2.4	34	87	8	110	35	27	11	26	1.90
19685890--19685973	35	2.4	35	84	7	100	40	26	7	26	1.81
19686218--19686244	2	13.5	2	100	0	54	48	0	0	51	1.00
19694234--19694298	20	3.3	19	77	14	60	33	4	6	55	1.45
19698302--19698414	57	2.0	57	89	3	174	21	38	20	20	1.94
19699829--19699883	28	2.0	28	85	7	76	23	14	23	38	1.92
19700469--19700605	42	3.3	42	91	0	202	21	22	30	24	1.99
19703768--19703812	21	2.1	21	84	8	56	55	2	13	28	1.50
19729508--19729593	26	3.2	26	64	30	63	30	39	11	18	1.86
19729430--19729638	55	3.8	55	94	1	348	29	37	11	21	1.89
19732454--19732480	13	2.1	13	100	0	54	22	0	0	77	0.76
19732670--19732708	20	2.0	20	100	0	78	5	7	10	76	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19733968--19734020	27	2.0	27	82	10	65	30	0	7	62	1.23
19738283--19738362	31	2.6	31	87	0	124	55	7	13	23	1.64
19743151--19743203	20	2.5	20	75	24	56	50	0	0	49	1.00
19745305--19745356	2	26.0	2	100	0	104	50	0	0	50	1.00
19745414--19745451	19	2.0	20	84	5	51	60	21	2	15	1.47
19746122--19746345	45	5.0	45	79	4	188	24	16	25	34	1.95
19746136--19746370	88	2.6	88	76	6	217	24	17	25	32	1.97
19746138--19746371	44	5.3	44	78	4	152	23	17	26	32	1.97
19746954--19747000	22	2.1	23	84	4	60	27	6	14	51	1.67
19752292--19752328	17	2.2	17	95	0	65	8	35	24	32	1.85
19752693--19752742	25	2.0	25	84	0	64	54	22	2	22	1.55
19755091--19755129	20	2.0	20	94	0	69	17	23	20	38	1.93
19759025--19759084	14	4.2	14	70	19	52	71	1	20	6	1.17
19761314--19761367	21	2.6	20	82	8	63	66	3	3	25	1.25
19761629--19761655	2	13.5	2	100	0	54	51	0	0	48	1.00
19761894--19761990	35	2.8	35	79	0	104	23	9	26	40	1.85
19762028--19762103	34	2.2	34	80	13	86	28	9	26	35	1.87
19762261--19762335	5	15.4	5	90	4	102	80	0	20	0	0.72
19775211--19775262	27	1.9	28	88	7	81	34	26	15	23	1.94
19780542--19780676	42	3.2	42	90	3	209	22	34	17	25	1.96
19783049--19783083	2	17.5	2	87	0	52	54	0	0	45	0.99
19784782--19784907	42	3.0	42	87	3	173	23	18	34	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19802357--19802392	17	2.1	17	94	0	63	33	22	36	8	1.84
19810880--19810985	38	2.8	38	92	0	167	22	15	38	23	1.92
19810880--19811020	38	3.7	38	87	5	160	22	16	38	22	1.93
19810991--19811148	54	2.9	54	87	6	232	18	13	43	23	1.86
19818124--19818157	14	2.3	15	85	5	52	47	20	14	17	1.83
19824402--19824690	61	4.8	61	87	2	420	24	16	32	25	1.97
19836368--19836407	19	2.0	20	85	4	55	47	17	2	32	1.61
19837796--19837958	43	3.8	43	87	1	229	23	19	32	23	1.98
19840541--19840579	21	1.9	20	89	5	60	30	0	5	64	1.15
19864620--19864681	31	2.0	31	100	0	124	32	12	9	45	1.75
19874795--19874826	2	16.0	2	93	0	55	46	3	0	50	1.17
19874826--19874874	2	25.5	2	91	8	84	0	0	46	53	1.00
19879759--19879887	42	3.1	42	95	2	224	22	23	32	21	1.98
19904124--19904340	86	2.5	87	82	5	255	38	24	14	22	1.92
19904124--19904320	42	4.6	42	79	5	207	39	23	16	20	1.92
19904124--19904333	43	4.9	42	79	5	215	38	24	15	21	1.92
19905458--19905488	16	1.9	16	93	0	53	67	19	0	12	1.22
19912272--19912325	28	2.0	28	85	3	74	29	24	24	22	1.99
19913315--19913348	15	2.2	16	89	5	52	41	2	8	47	1.50
19922129--19922153	13	1.9	13	100	0	50	48	8	0	44	1.32
19928334--19928358	13	1.9	13	100	0	50	48	8	0	44	1.32
19932204--19932243	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19932279--19932305	2	13.5	2	100	0	54	0	0	48	51	1.00
19935621--19935662	22	1.9	22	90	9	68	69	2	7	21	1.25
19936147--19936245	36	2.8	36	89	3	157	27	8	33	31	1.86
19942439--19942473	2	17.5	2	100	0	70	48	0	0	51	1.00
19942630--19942680	21	2.4	22	86	3	68	27	25	11	35	1.91
19944361--19944413	15	3.3	15	82	15	54	45	11	5	37	1.64
19953221--19953324	37	2.8	37	95	0	190	22	35	10	31	1.88
19958610--19958639	2	15.0	2	100	0	60	50	0	0	50	1.00
19962586--19962698	42	2.7	42	81	1	127	23	33	19	23	1.97
19963278--19963353	37	2.1	37	100	0	152	36	26	5	31	1.79
19965056--19965095	18	2.2	19	90	4	64	45	0	0	55	0.99
19976469--19976515	22	2.2	22	88	3	69	23	19	27	29	1.98
19990892--19990967	28	2.7	27	76	13	73	21	15	21	42	1.89
19991031--19991113	26	3.2	26	70	16	82	34	15	13	36	1.87
19991581--19991616	18	2.0	18	94	0	63	52	0	25	22	1.47
19996302--19996349	24	2.0	24	91	0	78	31	22	10	35	1.88
19998003--19998035	10	3.5	10	84	16	52	0	45	0	54	0.99
19998711--19998747	18	2.0	19	89	5	58	78	2	2	16	0.98
20003575--20003608	16	2.0	18	88	11	54	50	0	20	29	1.49
20005595--20005633	18	2.1	19	85	4	53	58	2	23	15	1.49
20011178--20011286	58	1.9	57	88	1	164	30	16	28	24	1.97
20011969--20012134	71	2.3	71	81	11	180	36	14	21	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20020641--20020667	7	3.9	7	100	0	54	44	0	29	25	1.54
20026367--20026418	20	2.6	20	78	0	68	23	44	5	26	1.76
20042763--20042815	28	1.9	27	88	3	79	28	22	18	30	1.98
20042860--20042905	20	2.3	20	88	7	67	45	17	4	32	1.68
20052163--20052218	29	1.9	29	89	7	87	35	12	1	50	1.51
20060689--20060811	43	2.9	43	84	7	151	22	36	16	24	1.94
20068502--20068655	43	3.6	44	82	6	199	19	34	21	24	1.96
20070611--20070656	2	23.5	2	82	4	58	45	0	6	47	1.28
20076568--20076610	21	2.0	22	86	4	61	6	16	0	76	0.99
20087117--20087150	16	2.2	15	89	5	50	67	5	5	20	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103