genome.fa.s5.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  45  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16826860--16826898	12	3.2	12	82	17	53	71	2	23	2	1.10
16827295--16827347	19	2.8	19	80	5	63	67	1	30	0	1.01
16827300--16827347	13	3.8	12	77	17	53	70	2	27	0	0.98
16827345--16827392	25	1.9	25	91	0	78	47	16	22	12	1.80
16827862--16828021	63	2.5	63	80	4	187	26	16	30	25	1.97
16832180--16832221	22	1.9	22	90	0	66	28	7	11	52	1.64
16832364--16832397	18	1.9	18	88	5	52	50	0	23	26	1.50
16838408--16838530	29	4.3	29	79	10	105	32	12	17	38	1.86
16838540--16838665	24	5.5	24	63	12	66	27	17	18	36	1.93
16844583--16844622	18	2.2	18	86	8	55	27	47	10	15	1.77
16852903--16852971	36	1.9	36	84	0	93	30	26	15	27	1.96
16854628--16854672	2	22.0	2	95	4	81	48	0	2	48	1.13
16854701--16854784	35	2.4	35	83	0	105	28	36	9	25	1.87
16854728--16854792	35	1.9	33	81	9	78	30	36	6	26	1.81
16854838--16854883	19	2.4	19	92	0	74	21	45	17	15	1.85
16856866--16856923	18	3.3	18	67	13	57	32	10	15	41	1.81
16856826--16857001	35	5.1	35	86	3	232	38	6	11	44	1.66
16856826--16857001	71	2.5	70	85	5	232	38	6	11	44	1.66
16856819--16857015	106	1.9	103	86	3	277	38	6	11	43	1.66
16864830--16865012	35	5.3	35	78	10	180	39	6	9	44	1.62
16864830--16865012	71	2.6	69	80	11	196	39	6	9	44	1.62
16872643--16872752	58	1.9	57	85	5	150	36	9	19	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16875086--16875273	72	2.6	72	90	1	297	40	20	18	20	1.92
16876713--16876758	20	2.3	20	92	0	74	30	4	19	45	1.70
16880409--16880461	2	26.5	2	100	0	106	50	0	0	49	1.00
16880483--16880597	43	2.7	43	83	0	149	20	36	19	23	1.95
16884537--16884669	42	3.1	43	93	5	227	23	34	18	24	1.96
16892016--16892051	17	2.2	17	90	5	56	33	19	33	13	1.91
16892609--16892659	20	2.5	21	83	3	68	19	1	7	70	1.21
16899036--16899070	9	3.8	9	85	7	52	77	0	0	22	0.78
16901375--16901412	19	2.0	20	89	5	60	10	5	18	65	1.41
16908110--16908144	17	2.1	17	89	10	54	22	5	2	68	1.24
16911762--16911813	22	2.4	22	93	0	86	28	21	21	28	1.98
16912035--16912112	40	2.0	40	89	2	122	37	24	16	21	1.94
16912445--16912562	42	2.8	43	84	7	143	21	35	19	23	1.96
16913381--16913418	19	2.0	20	94	5	69	42	15	21	21	1.89
16919835--16920031	74	2.7	74	79	6	220	20	16	18	44	1.87
16931791--16931972	60	3.0	60	85	3	233	24	34	17	24	1.96
16932682--16932719	16	2.4	16	86	0	58	0	21	0	78	0.74
16932793--16932836	13	3.5	13	78	15	56	0	29	2	68	1.02
16938530--16938581	23	2.3	21	81	12	59	9	28	9	51	1.66
16939364--16939485	43	2.8	43	90	2	183	23	18	38	18	1.93
16944795--16944976	60	3.0	60	87	3	251	24	35	17	22	1.95
16945856--16945902	24	2.0	23	83	4	58	0	38	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16945879--16945935	14	4.0	14	77	18	55	0	36	0	63	0.95
16946133--16946167	13	2.6	13	90	4	52	0	20	2	77	0.90
16947182--16947267	37	2.4	37	83	9	99	30	8	16	45	1.76
16980967--16981011	2	22.5	2	100	0	90	51	0	0	48	1.00
16983311--16983533	104	2.2	104	89	0	331	26	37	13	23	1.92
16990932--16990985	23	2.3	23	93	0	90	24	1	38	35	1.66
16998470--16998507	20	1.9	20	94	0	67	47	7	5	39	1.55
16998843--16998881	20	2.0	20	94	0	69	35	0	12	51	1.40
16999383--16999474	27	3.3	27	71	16	89	44	13	5	36	1.66
16999378--16999487	56	2.0	56	96	0	202	46	11	4	37	1.61
16999682--16999725	18	2.4	18	88	7	63	56	11	4	27	1.53
17001750--17001894	71	2.0	72	85	4	195	42	18	17	20	1.89
17004417--17004515	38	2.5	40	87	9	134	22	41	16	20	1.90
17004800--17004844	20	2.2	20	84	0	63	33	40	22	4	1.74
17012058--17012145	28	2.9	29	81	8	97	38	11	11	38	1.77
17012286--17012318	17	1.9	17	88	11	50	39	3	15	42	1.62
17015998--17016056	28	2.2	28	84	6	77	44	6	30	18	1.76
17022423--17022463	20	2.0	20	86	13	57	48	14	12	24	1.78
17026767--17026832	31	2.1	31	100	0	132	42	18	9	30	1.81
17048413--17048595	42	4.4	42	78	2	181	26	19	30	22	1.98
17051185--17051289	38	2.6	38	76	14	97	26	37	13	22	1.91
17051182--17051347	43	4.0	41	81	11	144	25	34	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17056670--17056709	19	2.1	19	85	4	53	47	7	30	15	1.72
17060866--17061059	71	2.7	69	81	6	219	34	8	12	43	1.74
17060839--17061059	35	6.3	35	79	5	207	34	8	13	44	1.73
17060878--17061080	35	5.7	36	82	2	171	35	7	13	43	1.73
17060922--17061082	71	2.2	72	80	3	173	34	7	14	42	1.74
17062165--17062532	179	2.0	181	89	2	562	37	13	16	33	1.87
17067620--17067674	28	2.0	28	86	13	78	30	16	21	30	1.95
17073296--17073505	106	2.0	106	82	3	253	35	6	14	44	1.70
17073439--17073480	21	2.0	21	85	0	57	38	0	11	50	1.40
17073258--17073526	35	7.7	35	79	4	233	36	7	14	42	1.72
17079562--17079707	68	2.1	68	80	0	166	34	10	21	32	1.88
17083129--17083187	20	2.9	21	73	14	61	40	11	15	32	1.83
17085104--17085231	40	3.2	40	80	2	152	26	10	27	35	1.90
17092214--17092314	38	2.6	40	88	3	152	21	40	16	20	1.91
17093188--17093233	19	2.3	20	81	11	58	39	10	21	28	1.87
17097376--17097423	24	2.0	24	83	4	60	54	18	22	4	1.61
17103139--17103171	16	2.0	17	88	5	50	27	0	6	66	1.15
17104406--17104449	23	2.0	22	86	13	63	27	4	29	38	1.76
17105547--17105588	21	2.1	20	86	8	59	23	0	9	66	1.21
17106441--17106478	20	1.9	19	85	15	51	2	10	10	76	1.12
17114104--17114181	40	2.0	40	85	7	106	41	15	11	32	1.83
17124167--17124217	2	25.5	2	95	0	93	50	1	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17124228--17124297	3	24.7	3	74	11	58	32	40	0	27	1.57
17124228--17124306	20	4.0	20	84	12	101	31	40	1	26	1.64
17124305--17124423	43	2.8	43	81	2	132	21	36	19	22	1.95
17133187--17133231	20	2.2	21	92	4	74	60	6	20	13	1.55
17133185--17133232	21	2.3	22	85	10	73	60	6	20	12	1.54
17135595--17135635	20	2.0	20	90	0	64	43	0	12	43	1.41
17138894--17138919	2	13.0	2	100	0	52	50	0	0	50	1.00
17160652--17160760	42	2.6	42	98	0	209	48	7	1	42	1.41
17160652--17160760	21	5.2	21	64	16	73	48	7	1	42	1.41
17163405--17163429	13	1.9	13	100	0	50	44	0	8	48	1.32
17165523--17165647	42	3.0	42	82	5	121	23	32	17	26	1.96
17165542--17165666	41	3.0	41	85	1	160	23	30	17	28	1.97
17170474--17170527	25	2.2	25	89	0	81	25	24	7	42	1.80
17172046--17172136	36	2.5	36	87	0	110	39	26	8	25	1.85
17172052--17172162	36	3.1	36	81	2	98	36	24	10	27	1.89
17186600--17186821	35	6.3	35	80	4	225	43	12	7	36	1.70
17186603--17186821	71	3.1	71	81	4	284	43	12	7	36	1.71
17186601--17186821	107	2.1	103	84	3	280	43	12	7	36	1.70
17190926--17191193	68	3.9	68	80	1	277	33	19	11	36	1.87
17192408--17192438	16	1.9	16	93	0	53	67	16	3	12	1.35
17193787--17193904	37	3.3	36	76	7	123	34	24	11	29	1.90
17193920--17193991	29	2.5	29	88	4	101	30	18	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17193920--17194023	29	3.5	30	81	5	95	30	19	16	33	1.94
17198196--17198363	54	3.1	54	92	0	273	19	13	41	25	1.88
17201329--17201381	22	2.4	22	81	6	63	20	30	24	24	1.99
17208196--17208367	54	3.2	54	93	0	299	19	13	41	25	1.87
17209450--17209590	36	3.9	36	78	3	151	34	19	25	20	1.96
17209447--17209583	72	1.9	72	84	3	186	32	18	25	22	1.97
17212755--17212917	77	2.1	76	88	1	245	40	7	10	41	1.67
17213863--17213908	2	22.5	2	95	4	83	47	0	2	50	1.13
17229128--17229252	42	3.0	42	92	0	196	22	34	22	20	1.97
17255271--17255299	9	3.3	9	95	4	51	27	0	0	72	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103