genome.fa.s5.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  44  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16377746--16377793	15	3.2	14	88	11	69	0	33	0	66	0.92
16377746--16377799	8	7.1	7	80	14	54	0	35	1	62	1.06
16401411--16401617	104	2.0	103	100	0	405	30	22	10	35	1.88
16412202--16412245	22	2.0	22	86	0	61	31	9	22	36	1.86
16412260--16412295	15	2.4	15	90	0	54	27	2	13	55	1.52
16412341--16412375	5	7.0	5	93	0	61	42	0	20	37	1.52
16416078--16416123	19	2.4	20	82	10	60	54	0	2	43	1.12
16431152--16431191	19	2.2	19	86	4	55	55	0	2	42	1.13
16432467--16432561	36	2.6	36	85	3	129	16	13	46	23	1.83
16432538--16432666	35	3.7	35	89	2	179	24	10	34	29	1.90
16435581--16435607	2	13.5	2	100	0	54	48	0	0	51	1.00
16440340--16440443	35	3.0	35	94	0	181	22	4	32	40	1.75
16440710--16440750	5	8.0	5	87	12	57	78	0	21	0	0.76
16440774--16440830	25	2.3	25	82	8	71	42	15	28	14	1.86
16440784--16440839	25	2.2	25	81	12	62	42	17	28	10	1.83
16442826--16442869	22	2.0	22	95	0	79	29	9	20	40	1.83
16448049--16448090	22	1.9	22	90	0	66	28	4	23	42	1.74
16448133--16448159	5	5.4	5	100	0	54	40	0	18	40	1.51
16458513--16458571	21	2.8	21	86	0	91	28	23	28	18	1.98
16466902--16466936	11	3.3	11	88	8	54	65	11	22	0	1.24
16471152--16471213	26	2.4	26	94	0	106	32	40	3	24	1.71
16471448--16471528	42	1.9	42	92	0	135	22	33	22	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16483897--16483946	25	2.0	25	88	0	73	54	16	18	12	1.72
16484990--16485027	2	19.0	2	100	0	76	50	0	0	50	1.00
16485143--16485245	38	2.6	40	84	6	138	26	19	33	20	1.96
16485541--16485571	14	2.2	14	94	0	53	25	19	6	48	1.72
16496860--16496908	25	2.0	25	95	0	89	28	20	28	22	1.98
16501552--16501593	21	2.0	21	90	0	66	19	28	19	33	1.96
16501902--16502007	39	2.7	41	81	11	130	20	41	17	19	1.90
16505461--16505516	28	2.0	28	82	0	67	41	5	25	28	1.77
16507385--16507491	43	2.5	43	81	3	135	26	21	32	19	1.97
16507513--16507572	23	2.6	23	91	0	93	23	1	43	31	1.64
16508168--16508320	77	2.0	78	92	1	254	22	21	20	35	1.96
16510402--16510453	25	2.1	25	85	0	68	26	17	32	23	1.96
16511133--16511200	14	5.5	13	74	25	67	38	11	11	38	1.79
16511143--16511193	10	4.7	10	80	17	57	39	11	11	37	1.79
16511133--16511203	24	3.0	24	97	0	133	39	11	11	38	1.77
16524616--16524727	54	2.1	54	96	0	206	25	41	12	20	1.88
16531150--16531197	21	2.4	21	80	13	57	62	18	2	16	1.42
16534953--16535215	127	2.1	128	86	3	370	55	7	24	11	1.62
16539409--16539447	18	2.2	18	85	0	51	25	12	17	43	1.85
16539570--16539594	13	1.9	13	100	0	50	44	0	24	32	1.54
16540799--16541013	27	8.0	27	74	9	136	21	28	19	30	1.98
16541273--16541321	15	3.3	15	73	0	53	42	24	6	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16543637--16543696	23	2.6	23	91	0	93	31	43	1	23	1.64
16543706--16543815	43	2.6	43	88	5	152	20	35	19	25	1.95
16551265--16551296	3	10.7	3	100	0	64	65	0	0	34	0.93
16572111--16572168	29	2.0	29	89	0	89	18	27	10	43	1.83
16574896--16574943	18	2.6	19	90	3	71	60	0	2	37	1.09
16580001--16580039	16	2.4	16	82	0	51	20	23	5	51	1.67
16590196--16590233	19	2.0	19	89	0	58	36	10	13	39	1.79
16591431--16591485	29	2.0	28	82	7	67	32	16	20	30	1.94
16591694--16591732	11	3.8	11	83	16	57	69	7	23	0	1.14
16591745--16591790	20	2.2	21	77	11	51	58	6	19	15	1.58
16591743--16591791	21	2.3	20	73	10	53	59	6	18	16	1.57
16596355--16596422	21	3.2	20	83	8	82	32	22	20	25	1.98
16605273--16605326	2	27.0	2	92	0	90	50	46	0	3	1.19
16605978--16606017	20	2.0	21	95	5	73	32	22	15	30	1.94
16609633--16609687	12	4.1	13	77	13	58	1	34	0	63	1.05
16610539--16610578	21	2.0	20	85	5	53	35	12	10	42	1.76
16611518--16611765	68	3.7	67	81	4	293	35	10	18	34	1.86
16611891--16611952	31	2.0	31	93	3	108	25	20	33	19	1.96
16612379--16612410	16	1.9	17	93	6	57	40	3	25	31	1.71
16619136--16619191	29	1.9	30	85	10	80	66	7	5	21	1.37
16628392--16628554	76	2.1	76	87	1	227	39	7	11	41	1.68
16638546--16638698	42	3.7	42	69	19	126	25	37	13	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16638523--16638730	81	2.6	81	90	3	330	26	38	12	22	1.90
16642490--16642573	38	2.2	39	80	8	91	25	17	33	23	1.97
16642559--16642716	54	2.9	53	87	7	221	18	12	44	24	1.84
16646672--16646718	2	23.0	2	91	4	76	46	2	2	48	1.25
16656973--16657075	38	2.7	38	86	6	127	24	16	35	23	1.95
16657043--16657204	54	3.0	54	88	0	252	20	13	41	24	1.88
16659798--16660086	145	2.0	145	95	0	515	30	11	23	33	1.90
16660250--16660298	23	2.1	24	85	11	66	59	0	20	20	1.38
16660523--16660561	19	2.0	20	90	5	62	15	30	10	43	1.80
16661079--16661113	2	17.5	2	93	0	61	48	2	0	48	1.16
16667920--16667981	26	2.4	26	94	0	106	32	40	3	24	1.71
16668035--16668282	83	3.0	83	100	0	496	19	41	18	21	1.91
16668382--16668504	42	2.9	42	92	0	210	22	33	21	21	1.97
16676141--16676179	2	19.5	2	94	0	69	48	0	2	48	1.15
16676184--16676246	20	3.2	20	90	2	101	30	41	3	25	1.71
16676245--16676363	43	2.8	43	89	2	168	19	37	21	21	1.94
16682515--16682665	53	2.8	53	84	5	178	23	37	15	23	1.93
16686600--16686718	43	2.8	43	85	2	150	23	19	36	20	1.95
16686723--16686767	23	2.0	23	86	8	65	17	2	48	31	1.59
16687140--16687181	21	2.0	21	90	0	66	35	21	26	16	1.94
16693991--16694108	43	2.7	43	78	2	130	26	18	35	19	1.95
16696273--16696391	37	3.2	37	85	5	161	28	10	36	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16699763--16699850	36	2.4	36	86	0	113	25	12	38	23	1.90
16702911--16702953	20	2.2	20	91	0	68	48	6	27	16	1.71
16708379--16708549	63	2.7	61	85	5	218	23	17	32	25	1.97
16712448--16712490	22	2.0	21	81	4	50	23	23	20	32	1.98
16712439--16712555	61	1.9	61	80	3	137	28	19	23	29	1.98
16713787--16713834	20	2.5	20	86	3	71	47	6	31	14	1.69
16717743--16717962	54	4.0	54	87	4	305	23	43	13	19	1.86
16723141--16723215	25	2.9	25	88	4	105	16	25	16	42	1.87
16723355--16723424	34	2.0	34	83	10	88	30	21	15	32	1.94
16724979--16726003	512	2.0	511	96	1	1876	34	20	8	36	1.83
16729701--16729770	25	2.7	25	91	4	104	15	25	17	41	1.89
16729960--16730006	24	2.0	24	86	0	67	34	25	8	31	1.86
16736558--16736605	20	2.4	20	85	0	60	29	6	22	41	1.78
16764711--16764765	25	2.2	25	96	0	101	16	25	14	43	1.86
16764757--16764791	16	2.2	16	90	5	54	2	17	0	80	0.84
16764838--16764885	22	2.2	22	96	0	87	12	43	8	35	1.73
16765043--16765130	34	2.6	34	88	0	122	36	21	12	29	1.90
16765649--16765689	20	2.0	20	100	0	82	34	43	0	21	1.53
16765649--16765698	20	2.5	20	90	6	66	32	46	0	22	1.52
16770434--16770533	37	2.7	37	87	1	148	21	16	39	24	1.92
16770600--16770637	2	19.0	2	89	10	60	47	2	0	50	1.15
16779553--16779611	26	2.3	26	79	5	66	66	3	28	1	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16790050--16790089	21	1.9	21	84	0	53	30	0	20	50	1.49
16800001--16800030	2	15.0	2	100	0	60	50	0	0	50	1.00
16814410--16814674	91	2.9	89	81	7	309	24	11	27	36	1.89
16814799--16814841	19	2.3	19	84	8	61	67	2	30	0	1.03
16815357--16815527	63	2.7	63	83	1	211	25	18	31	25	1.97
16821052--16821136	4	20.5	4	80	17	70	0	22	0	77	0.77
16821054--16821135	5	17.4	5	83	8	86	0	20	0	79	0.74
16821293--16821370	34	2.3	34	86	8	106	35	29	8	25	1.87
16826308--16826359	21	2.5	21	90	0	86	51	5	23	19	1.67
16826745--16826789	21	2.1	22	87	4	65	73	0	22	4	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103