genome.fa.s5.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  24  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8822489--8822537	13	3.5	13	80	20	62	79	0	2	18	0.83
8829664--8829717	27	1.9	28	81	7	65	29	14	24	31	1.95
8829924--8829961	3	12.7	3	100	0	76	0	31	0	68	0.90
8830664--8830698	2	17.5	2	100	0	70	51	0	0	48	1.00
8835606--8835656	2	25.5	2	100	0	102	0	49	0	50	1.00
8846132--8846325	34	5.4	34	64	16	104	29	35	11	23	1.90
8846093--8846332	73	3.3	73	90	1	356	29	35	11	24	1.91
8846059--8846286	39	6.1	38	66	22	103	29	33	11	25	1.91
8846937--8846966	2	15.0	2	92	0	51	0	46	3	50	1.18
8852464--8852508	2	22.5	2	100	0	90	48	0	0	51	1.00
8852524--8852611	42	2.1	42	91	0	140	23	17	35	23	1.95
8852534--8852653	42	2.8	42	83	3	134	25	15	35	23	1.94
8852844--8852901	21	2.8	21	94	0	98	17	22	22	37	1.93
8856454--8856504	25	2.0	25	84	0	66	45	3	0	50	1.20
8860236--8860303	30	2.3	30	86	0	100	30	4	8	55	1.50
8863419--8863514	2	48.5	2	84	2	104	6	42	0	50	1.27
8877861--8877930	35	2.0	35	91	0	113	28	12	8	50	1.70
8878121--8878169	25	1.9	26	84	12	66	53	8	0	38	1.31
8889778--8889808	16	1.9	16	93	0	53	61	25	0	12	1.32
8912061--8912115	27	2.0	27	89	0	83	29	10	27	32	1.91
8913696--8913720	5	5.0	5	100	0	50	0	20	0	80	0.72
8919952--8919985	12	2.8	12	81	0	50	32	2	0	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8920366--8920417	25	2.0	26	85	3	70	38	1	3	55	1.29
8923263--8923298	2	18.0	2	100	0	72	50	0	0	50	1.00
8924002--8924040	21	1.9	20	94	5	69	33	12	12	41	1.82
8970393--8970565	28	6.0	28	80	8	159	37	12	9	40	1.75
8970393--8970562	59	2.9	58	82	7	184	38	12	8	40	1.75
8973115--8973257	37	3.7	36	73	19	135	23	39	14	23	1.91
8973114--8973277	81	2.0	81	91	2	267	23	38	14	23	1.91
8985715--8985773	27	2.1	30	84	9	79	1	28	5	64	1.24
8990416--8990468	28	1.9	27	88	3	79	28	22	18	30	1.98
8990513--8990558	20	2.3	20	88	7	67	45	17	4	32	1.68
8997739--8997784	20	2.3	20	92	0	74	45	19	4	30	1.70
9000559--9000603	20	2.2	21	84	4	56	35	6	13	44	1.70
9010732--9010888	42	3.7	42	89	0	215	22	21	33	22	1.98
9013775--9013866	21	4.4	21	81	10	98	48	11	7	31	1.68
9013911--9013993	21	3.9	21	80	9	96	51	15	6	26	1.66
9019804--9019840	18	2.1	18	94	0	65	18	10	21	48	1.78
9020017--9020107	20	4.8	20	68	20	68	39	0	1	59	1.05
9020108--9020149	9	4.7	9	84	0	57	28	9	21	40	1.84
9020111--9020145	18	1.9	18	100	0	70	31	11	17	40	1.85
9030643--9030701	28	2.1	28	81	3	66	33	25	10	30	1.89
9040236--9040393	70	2.2	71	80	1	183	37	13	20	28	1.90
9040374--9040413	21	1.9	21	89	0	62	42	5	25	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9041506--9041590	42	2.0	42	90	0	134	23	31	24	20	1.98
9048002--9048105	38	2.9	36	76	11	113	23	24	13	39	1.90
9050219--9050243	13	1.9	13	100	0	50	52	0	0	48	1.00
9052595--9052649	26	2.1	27	86	3	76	38	7	21	32	1.81
9052662--9052734	18	4.1	18	76	3	67	42	23	15	19	1.88
9056150--9056184	16	2.1	16	89	5	52	77	0	22	0	0.78
9062309--9062363	28	2.0	28	85	7	76	36	21	14	27	1.93
9063759--9063875	42	2.8	42	88	0	162	23	31	20	24	1.98
9064656--9064699	19	2.3	19	76	0	52	40	11	34	13	1.81
9067470--9067505	12	2.8	14	80	20	51	30	0	0	69	0.89
9067480--9067505	12	2.2	12	100	0	52	30	0	0	69	0.89
9068399--9068465	34	2.0	34	93	0	116	32	20	17	28	1.96
9071552--9071605	21	2.6	21	90	0	90	20	27	24	27	1.99
9087472--9087505	17	2.1	17	88	5	52	52	0	5	41	1.25
9087993--9088053	3	20.3	3	100	0	122	32	0	0	67	0.91
9088489--9088542	25	2.2	25	83	6	65	31	9	5	53	1.56
9096591--9096644	25	2.2	26	83	10	76	14	33	14	37	1.88
9096604--9096651	25	1.9	25	95	0	87	12	29	16	41	1.85
9096646--9096688	10	4.0	10	80	14	50	0	20	0	79	0.74
9096646--9096688	16	2.6	16	89	10	61	0	20	0	79	0.74
9096651--9096696	12	3.3	14	79	14	51	0	26	0	73	0.83
9096683--9096821	30	5.0	30	70	19	104	0	46	7	45	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9096669--9096877	80	2.6	80	92	3	330	0	43	5	50	1.32
9096759--9096835	30	2.5	31	87	6	104	0	42	7	49	1.31
9096829--9096956	59	2.2	56	86	8	168	5	40	1	52	1.34
9097059--9097130	10	7.3	10	71	17	53	0	26	0	73	0.83
9097056--9097128	27	2.8	25	76	17	85	0	26	0	73	0.83
9097296--9097339	16	2.8	15	89	6	61	27	2	0	70	0.99
9097698--9097740	19	2.3	18	88	4	68	44	4	0	51	1.22
9098794--9098893	30	3.2	29	77	15	103	48	4	33	15	1.63
9098799--9098899	33	3.2	33	81	8	120	47	3	33	14	1.63
9104128--9104168	20	2.0	20	86	9	57	43	0	14	41	1.45
9111059--9111161	22	4.7	22	83	4	118	26	9	17	46	1.79
9111037--9111161	44	2.8	44	80	4	144	24	8	20	47	1.78
9111201--9111250	23	2.2	23	88	0	73	26	10	30	34	1.89
9111213--9111257	23	2.0	23	95	0	81	24	11	31	33	1.90
9111271--9111353	22	3.8	22	80	3	96	48	27	7	16	1.73
9111284--9111353	22	3.2	22	81	4	97	45	30	8	15	1.76
9113128--9113173	3	15.3	3	90	0	74	34	2	0	63	1.07
9116562--9116660	40	2.4	41	89	1	155	58	19	1	21	1.45
9128136--9128200	32	2.0	32	93	0	112	50	13	9	26	1.71
9128136--9128211	32	2.4	32	89	4	102	48	14	9	27	1.74
9131498--9131541	17	2.6	17	78	3	54	25	6	13	54	1.63
9131770--9131833	27	2.4	27	78	5	67	35	20	14	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9135971--9136013	19	2.2	20	87	4	61	0	23	4	72	1.04
9136300--9136338	20	2.0	20	85	10	53	23	15	15	46	1.83
9140553--9140582	3	10.0	3	92	0	51	66	3	0	30	1.07
9145359--9145385	2	13.5	2	100	0	54	51	0	48	0	1.00
9160865--9160980	2	58.5	2	80	11	123	45	1	5	46	1.35
9165687--9165720	2	17.0	2	100	0	68	50	0	0	50	1.00
9168097--9168181	23	3.7	23	90	0	134	37	29	9	23	1.86
9168098--9168445	26	14.6	25	78	13	231	36	27	12	24	1.91
9168167--9168463	95	3.1	95	88	4	447	35	25	13	25	1.92
9168430--9168491	21	3.0	21	78	0	70	35	25	14	24	1.93
9172296--9172339	21	2.2	20	88	12	63	65	4	4	25	1.30
9177806--9177851	20	2.3	20	84	0	56	32	2	21	43	1.65
9177815--9177852	20	1.9	20	88	0	58	34	0	26	39	1.57
9184566--9184591	13	2.0	13	100	0	52	84	7	7	0	0.77
9188081--9188118	20	1.9	20	100	0	76	44	21	5	28	1.73
9191523--9191567	11	4.1	11	79	0	54	20	2	2	75	1.01
9191516--9191574	30	2.0	29	83	9	75	20	5	1	72	1.12
9191776--9192377	38	15.8	38	82	4	685	43	18	13	23	1.87
9191857--9192377	150	3.5	150	88	2	742	44	19	13	22	1.85
9192389--9192461	1	73.0	1	72	0	56	1	2	9	86	0.73
9192389--9192458	16	4.6	14	81	15	77	1	2	10	85	0.76
9192392--9192465	6	12.5	6	80	8	64	1	2	10	85	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9192392--9192465	38	1.9	39	89	8	116	1	2	10	85	0.77
9192466--9192693	38	6.1	38	83	5	266	43	17	14	25	1.85
9192466--9192693	76	3.0	73	85	5	296	43	17	14	25	1.85
9197198--9197244	19	2.5	19	82	6	51	57	2	4	36	1.30
9197649--9197686	20	1.9	20	100	0	76	28	5	21	44	1.73
9198807--9198831	13	1.9	13	100	0	50	44	0	8	48	1.32
9211011--9211075	11	5.9	11	78	8	62	23	4	1	70	1.14
9211378--9211423	4	12.2	4	82	17	55	23	2	0	73	0.94
9211498--9211537	17	2.3	18	86	4	55	22	2	2	72	1.09
9211501--9211545	13	3.4	13	81	6	54	17	2	6	73	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103