genome.fa.s5.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  25  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9212912--9212989	21	3.5	21	69	19	68	16	15	47	20	1.83
9212899--9212991	46	2.0	47	95	2	170	16	16	44	23	1.86
9213236--9213310	27	2.8	27	87	0	105	45	10	21	22	1.82
9213751--9213798	24	2.0	24	83	0	60	37	16	10	35	1.83
9213894--9214020	26	4.9	25	72	17	73	40	11	14	33	1.82
9213919--9213978	29	2.0	30	84	9	79	41	13	8	36	1.74
9213842--9214147	83	3.8	79	79	8	267	39	13	14	32	1.86
9222007--9222215	105	2.0	103	94	4	377	30	11	15	41	1.83
9232376--9232596	54	4.1	54	93	0	361	19	13	40	26	1.88
9234333--9234393	28	2.2	28	88	5	88	22	0	9	67	1.20
9237920--9237982	8	8.2	8	77	12	62	1	31	1	65	1.12
9237932--9237993	16	3.9	15	78	14	63	1	32	1	64	1.13
9239306--9239358	26	2.1	25	82	3	61	60	9	1	28	1.38
9239320--9239369	26	1.9	26	84	8	66	56	10	4	30	1.51
9248680--9248867	36	5.2	36	74	17	131	29	33	14	22	1.94
9248754--9248885	39	3.5	39	71	14	123	28	34	14	21	1.93
9248793--9248908	34	3.3	34	70	19	101	27	36	14	21	1.93
9248751--9248922	73	2.4	73	88	2	256	28	34	13	22	1.93
9249704--9249746	14	2.9	15	82	6	61	79	4	6	9	1.06
9253296--9253333	20	1.9	20	100	0	76	44	21	5	28	1.73
9256521--9256573	26	2.0	26	100	0	106	30	11	11	47	1.74
9257169--9257193	13	1.9	13	100	0	50	48	0	32	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9265134--9265189	29	1.9	29	92	0	94	44	7	30	17	1.76
9265128--9265197	29	2.4	28	81	9	86	44	8	27	20	1.80
9265477--9265551	26	2.9	26	97	0	141	17	22	24	36	1.95
9265522--9265595	35	2.1	35	89	0	112	18	20	18	41	1.90
9265717--9265894	59	3.0	59	77	10	159	43	8	12	35	1.73
9265720--9265897	29	6.1	29	80	10	157	42	7	12	37	1.72
9265790--9265910	30	4.1	29	77	12	122	42	9	9	38	1.68
9266061--9266093	17	1.9	17	88	11	50	39	3	15	42	1.62
9269941--9269983	21	2.0	22	86	13	63	37	0	4	58	1.19
9287745--9287793	21	2.3	21	89	6	73	34	12	6	46	1.66
9288477--9288517	21	2.0	21	86	13	59	14	19	46	19	1.84
9322997--9323160	76	2.1	76	88	4	240	39	12	6	42	1.68
9325384--9325441	28	2.1	27	81	12	73	31	22	22	24	1.99
9326563--9326587	13	1.9	13	100	0	50	44	0	8	48	1.32
9338220--9338307	27	3.3	27	76	6	88	29	15	15	38	1.89
9345942--9346006	30	2.2	30	83	5	80	30	6	20	43	1.76
9351371--9351428	28	2.1	28	84	9	75	24	22	22	31	1.99
9351482--9351519	20	1.9	20	94	0	67	42	21	7	28	1.81
9371964--9371993	2	15.0	2	100	0	60	50	0	0	50	1.00
9376677--9376701	11	2.3	11	100	0	50	36	8	0	56	1.29
9380574--9380672	48	2.1	48	94	0	171	44	35	11	9	1.72
9380948--9380982	15	2.3	15	90	0	52	28	20	8	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9386592--9386630	3	13.3	3	83	5	53	64	0	0	35	0.94
9390218--9390290	30	2.4	29	80	10	85	34	8	2	54	1.44
9395709--9395733	12	2.1	12	100	0	50	24	8	8	60	1.52
9399754--9399804	2	27.0	2	88	11	81	50	0	0	49	1.00
9399756--9399804	15	3.4	15	86	11	75	51	0	0	48	1.00
9399754--9399803	17	3.0	17	97	2	93	52	0	0	48	1.00
9405712--9405755	23	1.9	23	90	9	72	59	0	25	15	1.37
9405960--9406025	33	2.0	33	82	11	82	34	9	1	54	1.41
9410984--9411078	47	2.0	46	85	2	127	7	27	15	49	1.71
9417019--9417139	64	1.9	63	89	5	190	36	15	13	34	1.87
9427850--9427928	41	1.9	41	97	0	149	35	22	12	29	1.91
9435966--9436008	21	2.0	21	81	0	50	41	0	6	51	1.29
9443266--9443310	22	2.0	22	91	4	72	68	4	20	6	1.29
9443419--9443451	2	16.5	2	100	0	66	51	0	48	0	1.00
9450731--9450865	66	2.1	65	82	12	163	35	5	0	57	1.28
9451788--9451840	6	9.2	6	87	8	56	15	0	33	50	1.44
9451802--9451841	2	20.0	2	84	0	53	7	0	42	50	1.30
9451885--9452006	8	15.0	8	75	8	95	47	13	1	37	1.52
9451896--9452008	12	9.1	12	78	7	100	48	14	0	36	1.50
9451896--9452008	4	28.2	4	79	7	77	48	14	0	36	1.50
9452783--9452853	37	1.9	37	85	5	99	71	0	2	25	0.99
9452799--9452853	20	3.0	17	78	19	58	76	0	1	21	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9452732--9453100	185	2.0	184	95	2	661	56	5	11	25	1.58
9452983--9453037	19	3.0	18	76	5	65	70	0	1	27	0.97
9453335--9453365	2	15.5	2	100	0	62	51	48	0	0	1.00
9457559--9457725	61	2.7	61	90	1	253	22	17	34	25	1.96
9460054--9460078	13	1.9	13	100	0	50	44	0	8	48	1.32
9462815--9462852	17	2.2	18	90	4	60	18	26	7	47	1.76
9465727--9465862	43	3.2	43	82	6	159	25	17	35	22	1.95
9466147--9466202	22	2.5	22	91	0	94	21	19	28	30	1.98
9469369--9469450	31	2.6	31	84	3	94	14	8	20	56	1.65
9475023--9475060	19	2.0	19	100	0	76	42	31	0	26	1.56
9476097--9476159	21	3.0	21	73	0	63	34	19	20	25	1.96
9476364--9476404	21	2.0	21	90	0	64	26	2	7	63	1.33
9480408--9480451	19	2.3	19	84	0	52	61	0	0	38	0.96
9482731--9482769	20	1.9	20	84	5	51	64	0	30	5	1.15
9483123--9483164	11	4.0	11	84	6	52	59	0	26	14	1.35
9484966--9485071	54	2.0	54	94	0	185	20	13	40	25	1.89
9485713--9485747	11	3.3	11	88	8	54	65	11	22	0	1.24
9488026--9488136	54	2.1	54	96	0	204	18	13	41	26	1.88
9491356--9491495	75	1.9	75	86	3	201	29	26	22	22	1.99
9491546--9491588	22	2.0	22	90	0	68	37	20	9	32	1.85
9491702--9491819	36	3.3	36	83	2	148	30	33	12	22	1.92
9491703--9491866	72	2.4	69	84	11	194	29	38	12	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9501790--9501849	25	2.4	25	82	0	75	25	31	15	28	1.95
9504177--9504201	11	2.3	11	100	0	50	28	0	0	72	0.86
9528107--9528147	21	2.0	21	95	0	73	31	21	21	24	1.98
9528746--9528781	17	2.1	17	89	0	54	19	2	0	77	0.88
9529159--9529224	24	2.8	24	83	4	80	34	42	0	22	1.54
9529143--9529219	8	9.9	8	76	4	68	29	42	0	27	1.56
9530722--9530761	21	1.9	21	90	10	64	40	0	25	35	1.56
9539591--9539628	19	2.0	19	100	0	76	42	31	0	26	1.56
9541177--9541231	20	2.6	22	71	26	55	12	41	5	40	1.66
9548600--9548652	27	2.0	27	84	0	70	26	16	20	35	1.94
9549075--9549202	43	3.0	42	83	2	157	25	17	33	24	1.96
9553013--9553179	71	2.4	71	81	6	203	37	17	16	28	1.92
9556381--9556553	85	2.0	85	97	0	328	31	18	19	30	1.95
9557909--9557961	2	27.0	2	96	3	99	49	0	0	50	1.00
9558674--9558724	23	2.3	23	83	10	61	68	0	5	25	1.12
9561187--9561226	2	20.5	2	94	5	73	50	0	0	50	1.00
9569157--9569209	28	1.9	27	85	11	72	32	15	20	32	1.93
9569157--9569216	28	2.1	28	82	11	70	31	16	21	30	1.96
9569284--9569313	8	3.6	8	95	4	51	53	0	3	43	1.17
9593224--9593256	17	1.9	17	93	0	57	18	39	12	30	1.87
9604501--9604560	31	1.9	31	82	0	75	45	5	28	21	1.73
9607117--9607154	20	1.9	20	94	0	67	31	5	18	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9607509--9607568	30	2.0	31	83	9	79	51	3	20	25	1.62
9620651--9620675	13	1.9	13	100	0	50	44	0	8	48	1.32
9622941--9623012	35	2.1	35	94	0	126	30	6	33	29	1.84
9626357--9626402	20	2.3	20	96	0	83	28	4	21	45	1.71
9637947--9637992	20	2.3	20	96	0	83	28	4	21	45	1.71
9638037--9638089	28	1.9	27	88	3	79	30	18	22	28	1.98
9638037--9638095	28	2.1	28	84	6	75	30	20	23	25	1.98
9641524--9641626	38	2.6	40	86	3	138	19	16	40	23	1.91
9643716--9643884	73	2.3	73	86	1	239	43	16	17	22	1.88
9644373--9644509	32	4.2	32	78	12	161	24	13	25	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103