genome.fa.s5.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  19  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6925007--6925059	28	1.9	27	88	3	79	28	22	18	30	1.98
6925104--6925149	20	2.3	20	96	0	83	45	21	4	28	1.71
6926886--6926929	20	2.2	20	100	0	88	38	4	11	45	1.61
6929949--6929981	3	11.0	3	93	0	57	66	3	0	30	1.06
6934758--6934880	42	2.9	42	92	0	210	21	21	33	22	1.97
6935115--6935176	26	2.4	26	94	0	106	24	3	40	32	1.71
6940138--6940162	13	1.9	13	100	0	50	48	8	0	44	1.32
6941241--6941294	28	2.0	27	85	3	72	25	20	20	33	1.97
6945260--6945449	35	5.4	35	77	5	179	23	7	42	27	1.80
6945260--6945466	70	3.0	69	75	11	197	24	6	42	25	1.79
6950221--6950258	20	1.9	20	88	0	58	28	26	15	28	1.96
6960846--6960947	45	2.3	45	83	6	120	47	1	3	47	1.32
6960985--6961091	22	4.8	22	65	11	65	46	2	5	44	1.41
6961342--6961408	23	2.9	23	68	12	57	50	5	1	41	1.36
6966263--6966287	13	1.9	13	100	0	50	48	8	0	44	1.32
6967438--6967475	19	2.0	19	100	0	76	42	31	0	26	1.56
6972562--6972605	22	2.0	21	83	12	54	31	6	9	52	1.59
6974424--6974584	37	4.4	37	73	0	115	17	23	21	37	1.94
6975278--6975311	14	2.4	14	95	0	59	11	11	20	55	1.67
6977822--6977847	2	13.0	2	100	0	52	0	50	0	50	1.00
6977797--6977901	54	2.0	52	98	1	192	7	32	7	51	1.59
6977876--6977901	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6982595--6982648	26	2.1	26	100	0	108	44	9	37	9	1.69
6986374--6986405	2	16.0	2	93	0	55	46	3	50	0	1.17
6996555--6996591	18	2.0	19	89	5	58	13	0	8	78	0.96
7006251--7006292	2	21.0	2	100	0	84	50	0	0	50	1.00
7006340--7006390	2	25.5	2	95	0	93	49	0	1	49	1.12
7009732--7009772	2	20.5	2	100	0	82	48	0	0	51	1.00
7011208--7011265	29	2.0	30	82	3	73	56	1	5	36	1.32
7013337--7013564	114	2.0	114	81	6	266	42	11	14	30	1.81
7020200--7020253	20	2.8	19	80	8	56	57	12	0	29	1.36
7036895--7036926	5	6.4	5	100	0	64	56	0	43	0	0.99
7040540--7040584	23	2.0	23	86	8	65	28	13	28	28	1.94
7040493--7040642	81	1.9	81	84	2	203	26	11	31	30	1.91
7040493--7040666	81	2.1	81	82	4	199	29	12	30	28	1.92
7040676--7041043	23	15.9	23	67	13	112	30	11	31	26	1.92
7040630--7040777	23	6.5	23	76	6	131	33	12	31	22	1.91
7040691--7040779	44	2.0	46	84	8	121	29	11	33	25	1.91
7040758--7040932	93	1.9	93	80	2	208	30	10	32	26	1.90
7040676--7041003	23	14.3	23	68	11	125	30	11	32	25	1.91
7041548--7041709	87	1.9	87	86	0	234	29	13	24	32	1.93
7041549--7041733	87	2.1	87	82	2	219	29	14	24	31	1.95
7041750--7041854	31	3.4	31	90	0	147	28	12	20	39	1.88
7043375--7043764	151	2.6	150	79	4	379	31	17	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7044308--7044475	81	2.1	81	81	2	194	28	15	29	26	1.96
7045839--7047531	76	22.3	74	82	3	1608	32	24	17	24	1.97
7050211--7050248	19	2.0	19	94	0	67	28	0	28	42	1.56
7051548--7051572	13	1.9	13	100	0	50	44	0	8	48	1.32
7053905--7053951	23	2.0	23	83	0	58	34	17	12	36	1.87
7054756--7054797	15	2.9	15	82	3	50	33	11	23	30	1.91
7055017--7055100	34	2.5	32	81	12	96	28	2	0	69	1.01
7054986--7055124	74	1.9	73	82	7	174	30	5	0	62	1.24
7055118--7055157	20	2.0	20	85	4	55	30	0	0	70	0.88
7055048--7055194	13	11.2	13	66	17	63	28	3	0	67	1.12
7055073--7055184	26	4.0	28	74	19	101	28	2	0	67	1.10
7055126--7055203	21	3.8	21	77	11	81	28	0	1	70	0.95
7060078--7060176	33	2.9	34	86	3	146	34	31	14	20	1.92
7060149--7060239	30	3.0	30	71	9	87	26	24	14	35	1.93
7060767--7060814	22	2.2	22	96	0	87	25	10	22	41	1.85
7070010--7070089	36	2.2	36	90	0	133	36	40	5	18	1.73
7070390--7070427	18	2.2	18	86	9	53	26	0	0	73	0.83
7071162--7071237	29	2.7	29	87	4	111	35	9	13	42	1.76
7071162--7071258	32	3.3	29	82	7	117	36	10	13	40	1.79
7071248--7071482	45	5.2	45	84	0	281	28	18	20	33	1.96
7072719--7072778	30	2.1	29	81	6	68	31	8	21	38	1.83
7080897--7080956	30	2.1	29	81	6	68	31	8	21	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7096655--7096699	21	2.1	22	83	4	56	60	6	2	31	1.35
7112751--7112779	3	9.7	3	100	0	58	65	0	0	34	0.93
7117318--7117463	42	3.5	42	80	5	170	22	20	35	21	1.96
7117504--7117531	8	3.5	8	100	0	56	39	10	10	39	1.75
7117517--7117900	18	21.2	18	76	11	180	40	7	9	42	1.67
7117512--7117685	36	4.6	36	84	10	213	43	10	6	39	1.66
7117549--7117738	54	3.3	54	85	11	254	44	10	5	40	1.62
7117554--7117900	36	9.8	36	77	11	209	40	7	9	42	1.66
7117734--7117896	8	20.9	8	77	5	73	36	4	12	45	1.64
7117520--7117802	24	12.0	24	70	11	176	41	8	8	41	1.66
7117529--7117894	44	8.2	44	71	7	218	40	7	9	42	1.66
7117547--7117897	48	6.7	54	72	11	171	41	7	9	42	1.65
7117666--7117902	34	7.0	34	76	12	170	38	6	11	43	1.66
7122844--7122913	34	2.2	32	82	7	79	20	14	28	37	1.91
7122856--7122934	34	2.4	34	83	10	92	26	11	27	34	1.91
7142263--7142295	14	2.4	14	100	0	66	42	15	15	27	1.86
7147189--7147220	16	2.0	16	100	0	64	18	12	25	43	1.85
7153364--7153630	68	3.9	68	78	0	255	36	9	19	34	1.85
7177458--7177597	39	3.6	38	85	3	156	25	13	34	26	1.93
7180348--7180404	30	1.9	30	96	0	105	26	5	12	56	1.57
7180833--7181030	74	2.7	74	83	2	220	41	17	21	20	1.90
7185412--7185482	35	2.0	35	91	0	115	38	7	23	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7189288--7189465	29	6.1	29	82	7	209	40	11	12	35	1.80
7189288--7189465	57	3.1	58	86	4	234	40	11	12	35	1.80
7194635--7194683	9	5.4	9	87	0	71	40	18	10	30	1.84
7194627--7194683	18	3.2	18	94	0	96	42	19	8	29	1.81
7194627--7194683	27	2.1	27	83	6	71	42	19	8	29	1.81
7208047--7208089	21	2.0	21	81	0	50	30	9	34	25	1.87
7217688--7217766	28	2.8	29	81	12	76	63	0	34	2	1.08
7219138--7219209	2	35.0	2	84	5	81	45	4	4	44	1.42
7219121--7219210	46	2.0	45	97	2	171	43	6	6	42	1.57
7219251--7219375	42	3.0	42	89	0	187	20	31	24	24	1.98
7223702--7223801	36	2.8	36	85	0	137	24	40	16	20	1.91
7240929--7240974	24	2.0	24	82	4	58	34	19	23	21	1.96
7252965--7253197	42	5.5	43	78	2	204	24	21	35	19	1.96
7254379--7254415	17	2.2	17	90	0	56	32	16	32	18	1.93
7255881--7255923	14	3.1	14	76	10	52	58	4	0	37	1.19
7257613--7257650	19	2.0	19	94	0	67	28	0	26	44	1.54
7260475--7260510	17	2.2	17	90	5	56	66	5	11	16	1.40
7264947--7264974	2	14.0	2	100	0	56	50	0	0	50	1.00
7265115--7265155	15	2.9	15	85	7	59	75	0	21	2	0.92
7267238--7267280	21	2.0	22	95	4	79	27	6	23	41	1.80
7271361--7271396	5	7.6	5	93	6	58	80	0	19	0	0.71
7271399--7271460	27	2.3	27	91	2	99	48	12	27	11	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7277993--7278073	40	2.1	39	92	2	135	27	2	13	56	1.50
7280491--7280542	20	2.6	20	84	0	68	40	15	9	34	1.80
7281181--7281222	2	21.0	2	100	0	84	50	0	0	50	1.00
7283166--7283212	17	2.6	18	86	10	69	59	0	6	34	1.23
7285489--7285518	2	15.0	2	100	0	60	50	0	0	50	1.00
7287058--7287110	16	3.2	16	84	10	63	16	5	9	67	1.37
7288800--7288851	20	2.7	20	74	14	54	30	0	7	61	1.24
7297101--7297143	14	3.1	15	80	16	56	76	0	23	0	0.78
7297098--7297134	19	1.9	19	89	10	58	70	0	29	0	0.88
7306501--7306539	18	2.2	18	100	0	78	46	10	10	33	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103