genome.fa.s5.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  83  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30901563--30901630	35	1.9	35	91	5	111	60	8	0	30	1.27
30901563--30901646	35	2.4	35	84	9	93	60	10	0	28	1.30
30903299--30903345	23	2.1	22	81	14	53	36	8	14	40	1.77
30904020--30904057	18	2.1	18	85	9	51	50	0	0	50	1.00
30904057--30904103	21	2.1	24	80	15	64	38	0	0	61	0.96
30904059--30904099	18	2.1	20	86	13	59	34	0	0	65	0.93
30904059--30904103	23	2.0	21	87	8	63	37	0	0	62	0.96
30904096--30904138	18	2.4	18	84	0	59	55	0	0	44	0.99
30904104--30904151	15	3.0	15	80	16	60	52	0	0	47	1.00
30904119--30904173	25	2.2	25	83	6	67	45	0	0	54	0.99
30904214--30904280	26	2.5	28	76	18	70	41	8	1	47	1.44
30904321--30904391	30	2.4	30	83	4	90	56	1	1	40	1.17
30926113--30926164	24	2.2	24	82	0	59	25	11	3	59	1.49
30929211--30929278	35	2.0	34	91	2	109	50	1	5	42	1.35
30933401--30933448	24	2.0	24	100	0	96	41	4	8	45	1.53
30934438--30934512	21	3.4	21	80	10	78	33	13	14	38	1.85
30934403--30934507	23	4.8	22	76	14	92	31	13	19	36	1.90
30934862--30934933	32	2.2	32	97	0	135	38	22	13	25	1.91
30935222--30935266	21	2.1	21	87	0	63	28	17	35	17	1.93
30938282--30938423	76	1.9	75	83	1	185	25	14	26	33	1.95
30938310--30938523	106	2.0	106	81	8	249	25	14	29	30	1.94
30938568--30938695	62	2.1	62	88	2	186	22	8	34	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30938568--30938695	31	4.1	31	83	0	157	22	8	34	34	1.85
30938739--30938807	31	2.2	31	89	0	102	27	15	30	26	1.96
30938491--30938806	169	1.9	168	84	2	427	25	14	30	29	1.95
30943097--30943166	31	2.3	31	79	0	77	35	15	15	32	1.90
30943180--30943366	86	2.2	87	87	4	263	30	22	15	31	1.95
30943911--30943992	23	3.6	23	75	3	76	24	34	14	26	1.94
30944007--30944069	23	2.7	23	77	0	72	17	33	14	34	1.90
30944078--30944133	24	2.3	24	93	0	94	25	32	17	25	1.97
30944242--30944346	23	4.7	23	78	13	103	24	29	14	31	1.94
30944242--30944430	46	4.2	45	69	15	129	22	28	14	34	1.94
30944485--30944534	23	2.2	23	88	0	73	28	36	6	30	1.81
30946228--30946274	23	2.0	23	91	0	76	21	27	29	21	1.98
30946259--30946549	31	9.4	31	80	3	282	24	16	20	38	1.92
30946259--30946549	62	4.7	62	82	1	316	24	16	20	38	1.92
30951889--30952004	31	3.7	31	92	0	178	38	21	14	25	1.91
30952051--30952302	111	2.3	110	79	3	254	46	26	11	14	1.79
30952051--30952318	55	4.9	54	77	5	241	46	27	11	14	1.79
30952547--30952601	23	2.4	23	87	0	83	18	30	20	30	1.96
30952655--30953111	81	5.7	81	69	6	280	23	33	14	29	1.94
30952476--30952787	104	3.0	104	70	5	261	21	32	16	29	1.95
30952795--30952925	57	2.3	57	81	0	145	22	31	13	32	1.93
30952610--30953088	242	2.0	241	86	1	663	23	32	14	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30953054--30953132	23	3.4	23	83	0	95	22	39	10	27	1.86
30953928--30953953	12	2.2	12	100	0	52	61	7	0	30	1.24
30954973--30955021	24	2.0	24	84	15	64	34	2	4	59	1.28
30954986--30955046	30	2.0	30	87	0	86	34	1	3	60	1.23
30955080--30955122	20	2.2	20	100	0	86	25	0	13	60	1.34
30955468--30955540	31	2.4	31	90	0	110	19	10	24	45	1.82
30958575--30958613	20	2.0	20	100	0	78	33	10	20	35	1.86
30963485--30963562	39	2.0	39	87	5	113	44	8	14	32	1.76
30977297--30977335	2	19.5	2	100	0	78	51	0	0	48	1.00
30977463--30977497	18	1.9	18	88	11	54	68	0	28	2	1.04
30977834--30977902	27	2.5	27	74	6	68	34	1	2	60	1.20
30989500--30989566	21	3.3	21	66	16	59	52	19	13	14	1.75
30989500--30989579	40	2.0	40	97	0	151	53	17	11	17	1.72
30990829--30990976	66	2.2	67	96	1	271	28	5	14	51	1.65
30994536--30994609	35	2.1	35	82	7	89	59	10	0	29	1.31
30996645--30996679	11	2.9	12	87	12	54	65	0	0	34	0.93
30996974--30997021	25	1.9	25	87	8	71	47	0	0	52	1.00
30996983--30997019	15	2.5	15	91	4	58	48	0	0	51	1.00
31015294--31015329	18	1.9	19	88	5	56	75	0	25	0	0.81
31015879--31015909	13	2.4	13	94	0	53	45	3	0	51	1.17
31023117--31023182	30	2.2	30	94	0	114	34	13	4	46	1.64
31036935--31037080	24	6.1	24	71	7	91	20	19	21	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31036914--31037076	48	3.4	46	77	11	157	19	19	21	39	1.92
31037750--31037783	2	17.0	2	93	0	59	50	2	0	47	1.16
31037970--31038076	24	4.5	24	74	9	76	20	18	24	36	1.95
31041612--31041640	14	2.0	15	93	6	51	41	3	0	55	1.17
31041624--31041840	108	2.0	107	95	3	391	37	11	5	45	1.63
31044542--31044573	10	3.2	10	95	0	55	28	0	28	43	1.55
31046942--31047036	24	4.0	24	75	5	84	14	16	27	41	1.88
31046938--31047060	48	2.6	48	83	5	131	15	15	28	40	1.88
31046975--31047060	24	3.6	24	74	0	73	13	12	30	43	1.82
31046971--31047076	48	2.2	48	82	0	131	16	16	27	40	1.89
31047067--31047127	24	2.5	24	86	5	79	13	24	26	36	1.92
31047141--31047207	24	2.8	24	88	0	89	13	17	25	43	1.86
31047951--31048010	2	30.5	2	75	9	52	50	6	0	43	1.28
31047952--31048010	31	1.9	31	85	0	82	49	6	0	44	1.29
31050969--31051008	21	1.9	21	94	0	71	45	17	17	20	1.86
31054460--31054499	18	2.3	18	86	4	55	32	12	30	25	1.92
31054535--31054597	29	2.2	30	80	8	76	38	15	23	22	1.93
31054576--31054641	33	2.0	33	91	5	107	42	21	16	19	1.89
31054623--31054667	14	3.4	14	70	17	51	40	17	17	24	1.91
31054721--31054765	14	3.4	14	70	17	51	40	17	17	24	1.91
31066696--31066774	24	3.3	24	75	7	70	18	16	22	41	1.90
31067526--31067560	2	17.5	2	93	0	61	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31073716--31073757	2	21.5	2	95	4	77	50	0	0	50	1.00
31073952--31074098	48	3.1	47	80	6	154	16	21	23	39	1.92
31073950--31074038	24	3.7	23	70	7	70	13	22	24	39	1.90
31074031--31074100	24	3.0	23	72	14	61	18	18	22	40	1.92
31075089--31075239	24	6.3	24	70	9	85	18	15	26	39	1.91
31075089--31075242	48	3.2	47	77	3	164	18	16	25	38	1.92
31081485--31081521	17	2.2	17	90	4	58	5	5	5	83	0.90
31081766--31081805	17	2.3	18	86	4	55	72	2	2	22	1.09
31093801--31093867	24	2.8	24	83	0	80	14	19	23	41	1.89
31093793--31094516	135	5.4	135	88	2	1031	20	17	26	35	1.95
31094208--31094271	24	2.6	24	85	2	74	14	18	25	42	1.88
31094341--31094407	24	2.8	24	86	0	80	14	19	23	41	1.89
31094510--31094599	45	2.0	45	100	0	180	26	17	20	35	1.95
31096520--31096630	24	4.6	24	75	0	87	11	15	26	46	1.80
31097391--31097423	2	16.5	2	100	0	66	51	0	0	48	1.00
31097483--31097511	2	14.5	2	100	0	58	51	0	0	48	1.00
31097395--31097562	88	1.9	87	97	2	311	54	4	13	27	1.56
31101830--31101864	14	2.4	15	90	4	54	25	22	25	25	2.00
31102728--31102777	26	2.0	25	88	4	73	58	0	26	16	1.38
31103033--31103062	2	15.0	2	100	0	60	50	0	0	50	1.00
31105471--31105508	19	2.0	19	100	0	76	42	10	0	47	1.38
31120496--31120529	17	1.9	18	88	5	52	85	0	8	5	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31133677--31133729	23	2.3	22	84	9	70	49	0	1	49	1.12
31133675--31133735	15	3.9	16	77	10	56	45	0	3	50	1.17
31134403--31134599	91	2.2	89	84	4	252	48	3	4	43	1.40
31134640--31134740	42	2.4	42	83	5	123	51	2	1	43	1.28
31134495--31134873	156	2.4	156	89	3	557	53	3	3	39	1.33
31134802--31135017	42	5.2	41	69	16	142	52	1	3	42	1.30
31134851--31134884	15	2.3	15	94	0	59	44	2	0	52	1.16
31134495--31134938	156	2.8	154	81	6	475	55	3	2	38	1.31
31134744--31134993	123	2.0	122	87	2	358	54	2	3	39	1.31
31134979--31135039	22	2.6	22	78	17	61	45	1	1	50	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103