genome.fa.s5.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  71  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26567746--26567818	36	2.0	36	91	0	119	41	12	2	43	1.56
26580739--26580776	12	2.8	14	80	19	53	28	0	10	60	1.30
26595881--26595995	58	2.0	58	94	0	203	38	8	15	37	1.79
26600060--26600087	2	14.0	2	100	0	56	50	0	50	0	1.00
26609785--26609856	36	2.0	36	100	0	144	41	13	16	27	1.87
26612922--26613009	36	2.5	35	80	10	106	44	5	22	27	1.75
26614839--26614879	20	2.0	20	90	0	64	26	0	7	65	1.18
26616031--26616089	28	2.1	29	84	9	77	55	10	20	13	1.66
26616031--26616125	29	3.3	29	79	8	79	51	8	24	15	1.71
26628842--26628881	2	20.0	2	100	0	80	50	0	0	50	1.00
26628981--26629016	2	18.0	2	100	0	72	50	0	0	50	1.00
26631227--26631253	2	13.5	2	100	0	54	0	48	0	51	1.00
26644611--26644663	15	3.5	15	76	0	52	5	41	11	41	1.64
26683609--26683691	31	2.7	30	76	7	87	26	18	4	50	1.66
26684725--26684788	19	3.4	18	79	12	58	45	1	0	53	1.10
26684747--26684790	19	2.2	21	88	8	65	40	2	0	56	1.11
26687459--26687512	20	2.6	21	79	2	56	24	16	16	42	1.88
26688264--26688308	14	3.4	14	70	17	51	40	13	11	35	1.80
26688262--26688332	25	2.8	25	95	0	124	43	11	9	35	1.74
26691071--26691138	29	2.4	28	80	9	68	51	0	32	16	1.45
26691600--26691633	16	2.1	17	88	5	52	76	0	17	5	0.98
26692457--26692513	23	2.5	22	81	13	62	19	5	0	75	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26692457--26692509	26	2.0	26	85	0	70	20	5	0	73	1.03
26694611--26694643	7	4.6	7	96	3	57	15	0	15	69	1.19
26694801--26694830	15	1.9	16	93	6	53	6	36	0	56	1.26
26699643--26699713	37	1.9	37	91	0	115	43	9	9	36	1.71
26720714--26720758	23	1.9	24	86	4	65	42	24	11	22	1.86
26726034--26726112	35	2.3	34	84	2	95	54	15	3	26	1.58
26726756--26726790	18	1.9	18	88	0	52	54	0	0	45	0.99
26728384--26728466	33	2.5	33	86	3	105	67	0	7	25	1.16
26728684--26728739	15	3.7	15	83	4	60	32	26	8	32	1.87
26740657--26740694	2	19.5	2	89	5	60	0	50	0	50	1.00
26740698--26740741	2	22.5	2	90	4	72	47	2	0	50	1.13
26755038--26755077	19	2.2	19	86	13	57	12	0	20	67	1.22
26758293--26758348	21	2.6	21	71	23	53	44	1	5	48	1.36
26758385--26758454	32	2.1	34	84	5	90	41	2	5	50	1.41
26767194--26767237	23	1.9	23	81	9	54	45	25	9	20	1.80
26780629--26780670	22	1.9	22	95	0	75	42	0	4	52	1.22
26780657--26780687	16	1.9	16	100	0	62	45	0	0	54	0.99
26780650--26780688	16	2.5	15	88	8	60	43	0	2	53	1.14
26780841--26780874	16	2.1	16	100	0	68	41	0	0	58	0.98
26780853--26780919	21	3.1	21	76	20	66	38	1	2	56	1.24
26780900--26780946	17	2.8	17	68	12	51	44	0	2	53	1.12
26780932--26780964	16	2.0	17	88	5	50	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26797156--26797233	41	1.9	41	97	0	147	19	29	12	38	1.89
26801108--26801143	16	2.2	16	90	0	54	25	27	19	27	1.99
26808475--26808517	4	10.5	4	80	14	52	27	0	0	72	0.85
26808564--26808624	30	2.0	32	87	12	92	19	11	0	67	1.21
26812682--26812726	15	3.2	14	87	6	65	75	0	0	24	0.80
26813844--26813908	34	1.9	34	87	3	96	58	1	3	36	1.23
26815155--26815185	15	2.1	14	94	5	53	45	0	0	54	0.99
26816900--26816924	5	5.0	5	100	0	50	80	0	0	20	0.72
26826048--26826093	15	3.1	14	84	9	65	54	15	4	26	1.59
26846052--26846106	12	4.8	11	74	22	51	20	1	1	76	0.97
26847424--26847456	2	16.0	2	93	6	57	48	3	0	48	1.17
26854497--26854536	2	20.0	2	84	0	53	50	2	0	47	1.14
26855911--26855982	35	2.1	34	87	7	101	58	18	0	23	1.39
26857870--26857910	17	2.4	18	80	12	50	39	0	0	60	0.96
26858855--26858897	15	2.9	15	82	0	50	41	23	2	32	1.67
26863449--26863521	33	2.1	34	87	5	103	58	16	0	24	1.38
26863675--26863707	16	2.1	17	88	11	52	39	3	6	51	1.42
26866875--26866899	13	1.9	13	100	0	50	44	0	0	56	0.99
26874219--26874257	21	2.0	19	85	14	53	20	5	38	35	1.75
26881572--26881621	23	2.1	24	88	3	75	42	0	10	48	1.37
26892457--26892500	23	1.9	23	81	9	54	45	25	9	20	1.80
26901920--26901957	19	2.0	19	100	0	76	26	26	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26905880--26905930	22	2.3	22	82	0	66	47	1	0	50	1.12
26905878--26906002	42	2.9	42	81	11	132	44	2	1	52	1.24
26906220--26906265	23	2.0	23	83	8	58	36	0	0	60	0.97
26906229--26906313	30	3.0	29	74	20	81	44	1	0	54	1.07
26915890--26915967	41	1.9	41	89	0	120	20	29	10	39	1.85
26918897--26918962	34	2.0	33	96	0	114	40	9	10	37	1.72
26919977--26920230	135	1.9	136	88	2	386	32	11	11	44	1.77
26921213--26921248	16	2.2	16	90	0	54	25	27	19	27	1.99
26928249--26928283	18	1.9	18	88	0	52	40	8	8	42	1.66
26928530--26928568	18	2.2	18	95	0	69	28	7	20	43	1.79
26929095--26929125	1	31.0	1	100	0	62	0	100	0	0	0.00
26933440--26933503	34	1.9	34	90	3	103	59	1	1	37	1.16
26957662--26957699	19	2.0	19	94	0	67	42	28	0	28	1.56
26958863--26958947	22	3.9	22	74	11	93	45	27	8	18	1.78
26959017--26959082	22	3.0	22	80	6	73	46	28	7	16	1.74
26959027--26959090	22	3.0	22	86	2	85	45	26	10	17	1.81
26959027--26959100	22	3.4	21	84	1	76	44	25	10	18	1.82
26959091--26959133	22	2.0	22	85	0	59	37	23	16	23	1.94
26959134--26959214	38	2.1	38	83	0	99	39	24	14	20	1.91
26962030--26962142	25	4.6	25	77	8	88	23	14	23	38	1.92
26965773--26965797	2	12.5	2	100	0	50	0	48	0	52	1.00
26966966--26967012	22	2.1	23	84	4	60	51	14	4	29	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26967140--26967181	3	14.0	3	94	0	75	33	30	0	35	1.58
26968547--26968594	4	12.8	4	77	18	50	77	2	0	20	0.88
26968552--26968593	11	3.9	11	84	6	59	76	2	0	21	0.90
26968547--26968594	17	3.0	17	82	8	57	77	2	0	20	0.88
26968547--26968590	11	4.1	10	80	13	52	77	2	0	20	0.88
26968610--26968652	8	5.5	8	83	2	52	25	0	46	27	1.53
26968610--26968652	16	2.8	16	89	3	70	25	0	46	27	1.53
26968610--26968657	24	2.0	23	88	4	69	25	2	43	29	1.66
26971531--26971558	11	2.5	11	100	0	56	46	28	0	25	1.53
26980177--26980217	20	2.0	20	90	9	66	75	4	4	14	1.14
26990336--26990430	49	1.9	49	93	2	156	12	30	6	49	1.65
26991256--26991327	37	1.9	37	100	0	144	29	11	37	22	1.88
26995425--26995472	22	2.2	22	96	0	87	27	18	18	35	1.95
26997790--26997851	22	2.8	22	87	4	90	33	32	9	24	1.88
26998863--26998925	22	2.9	21	85	4	81	38	28	11	22	1.88
26999872--26999925	21	2.6	21	90	0	81	20	18	27	33	1.96
26999912--27000042	23	5.6	23	86	8	149	26	11	28	33	1.91
27000054--27000135	22	3.8	21	74	9	69	42	23	10	23	1.85
27003483--27003599	55	2.1	55	96	0	216	32	15	14	37	1.88
27011160--27011202	10	4.4	10	82	5	61	46	6	4	41	1.51
27011151--27011194	19	2.3	19	100	0	88	43	4	9	43	1.56
27011700--27011786	2	45.0	2	86	11	128	50	2	0	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27024722--27024783	27	2.3	28	78	13	67	48	1	3	46	1.28
27024854--27024895	16	2.7	16	82	10	52	57	2	0	40	1.12
27025094--27025144	23	2.2	23	82	6	59	45	9	1	43	1.48
27026735--27026812	41	1.9	41	83	0	102	26	10	23	39	1.86
27040468--27040536	11	5.9	11	72	14	50	21	2	0	75	0.93
27040472--27040532	16	3.6	16	75	20	61	21	3	0	75	0.94
27040476--27040543	21	3.0	24	72	14	63	27	2	0	69	1.03
27041000--27041060	24	2.6	23	80	17	72	22	3	0	73	0.97
27041207--27041243	17	2.1	19	85	10	51	32	2	0	64	1.07
27042553--27042615	19	3.2	19	77	20	74	3	1	12	82	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103