genome.fa.s5.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  60  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22797753--22797800	2	24.0	2	100	0	96	50	0	0	50	1.00
22807537--22807666	43	3.0	43	86	2	172	26	33	16	23	1.96
22808494--22808542	23	2.1	23	81	11	55	22	18	2	57	1.51
22813161--22813222	30	2.1	30	100	0	124	37	30	3	29	1.73
22833082--22833116	18	1.9	18	88	11	54	57	0	0	42	0.99
22833089--22833149	32	2.0	30	84	12	79	55	1	0	42	1.09
22833293--22833643	24	15.3	24	67	21	127	56	2	0	40	1.18
22833081--22833355	109	2.6	106	78	14	289	55	4	0	40	1.21
22833469--22833510	18	2.3	19	84	12	52	61	0	2	35	1.09
22833428--22833622	40	5.0	39	68	18	122	56	1	1	41	1.15
22833378--22833535	64	2.5	62	77	11	160	57	2	1	38	1.20
22833505--22833556	27	1.9	27	96	0	95	50	3	0	46	1.20
22833599--22833671	20	3.5	20	81	7	65	50	0	0	49	1.00
22833651--22833700	27	2.0	26	84	11	68	46	4	2	48	1.32
22838280--22838362	41	2.0	40	84	9	105	36	13	15	34	1.87
22843911--22844008	40	2.5	40	84	3	126	36	25	10	27	1.88
22847886--22847935	23	2.2	23	100	0	100	48	8	22	22	1.76
22852333--22852369	13	2.8	13	95	0	65	5	16	27	51	1.66
22852378--22852517	75	1.9	74	85	4	192	26	19	23	30	1.98
22856566--22856598	17	1.9	17	88	11	50	42	15	3	39	1.62
22856739--22856912	59	3.0	59	83	6	205	37	10	8	42	1.71
22856739--22856909	29	5.9	28	79	8	164	38	11	8	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22881643--22881682	21	1.9	21	89	0	62	67	0	2	30	1.04
22891969--22892102	36	3.9	36	72	18	115	27	38	13	20	1.90
22892011--22892116	33	3.3	33	67	19	96	29	39	12	18	1.87
22892044--22892150	31	3.4	31	72	10	108	27	41	11	20	1.86
22892005--22892155	64	2.4	64	93	0	257	27	39	13	19	1.89
22895405--22895544	50	2.8	48	76	10	127	30	11	23	34	1.90
22898084--22898129	20	2.3	20	96	0	83	21	15	4	58	1.54
22900427--22900551	42	3.0	42	89	2	189	18	21	36	24	1.95
22900596--22900629	2	17.0	2	100	0	68	50	0	0	50	1.00
22900700--22900811	42	2.7	42	80	0	125	23	20	33	22	1.97
22900852--22900893	2	21.0	2	95	0	75	50	2	0	47	1.14
22918836--22918880	2	22.5	2	95	0	81	51	2	0	46	1.13
22919128--22919153	2	13.0	2	100	0	52	50	0	0	50	1.00
22920540--22920584	20	2.2	21	84	11	58	26	2	22	48	1.62
22923711--22923882	50	3.4	50	81	7	188	29	15	22	33	1.94
22926805--22926850	21	2.2	21	92	0	74	36	17	15	30	1.91
22926983--22927137	71	2.2	71	80	6	163	37	21	13	27	1.91
22935176--22935297	37	3.3	37	87	0	181	31	9	34	24	1.87
22937713--22937771	28	2.1	27	84	3	73	32	13	11	42	1.81
22939561--22939706	37	3.9	37	91	5	233	28	10	35	25	1.89
22951879--22951983	35	2.9	35	75	2	102	28	20	18	33	1.96
22954348--22954415	20	3.4	20	71	17	52	61	13	0	25	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22957807--22957940	71	1.9	72	83	7	175	26	19	17	37	1.93
22964368--22964434	34	2.0	34	90	0	107	23	13	10	52	1.71
22968665--22968735	34	2.1	34	84	2	90	23	12	28	35	1.92
22968736--22968838	35	2.9	35	82	4	91	37	13	18	30	1.89
22970124--22970250	36	3.6	36	81	2	148	37	15	25	21	1.93
22971717--22971819	38	2.6	40	83	8	124	20	16	41	21	1.90
22985538--22985594	30	1.9	29	89	3	87	36	10	24	28	1.88
22992291--22992329	19	2.1	19	85	4	53	66	0	20	12	1.24
22992351--22992645	147	2.0	148	90	3	470	43	14	17	25	1.86
22998094--22998129	11	3.4	11	88	7	56	0	22	11	66	1.22
22999935--23000138	60	3.3	61	88	2	284	22	17	32	26	1.96
23004003--23004128	42	3.0	42	89	0	189	23	20	34	21	1.96
23005270--23005301	2	16.0	2	93	0	55	46	0	3	50	1.17
23005343--23005466	42	3.0	42	91	0	194	22	34	21	20	1.97
23008134--23008203	29	2.3	29	80	4	77	28	10	15	45	1.78
23009390--23009524	66	2.0	67	85	4	184	28	14	24	33	1.94
23017446--23017489	21	2.2	20	83	4	52	25	6	4	63	1.38
23028087--23028159	30	2.3	32	81	11	96	34	2	17	45	1.63
23028103--23028165	30	2.1	30	96	0	117	26	3	22	47	1.66
23028919--23028951	17	2.0	17	88	5	50	27	18	9	45	1.79
23029685--23029719	11	3.3	11	88	8	54	65	8	22	2	1.34
23036449--23036610	49	3.3	49	73	3	137	30	11	23	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23040126--23040198	32	2.2	33	85	2	94	50	10	1	36	1.46
23043509--23043678	43	4.0	43	85	4	211	24	17	33	24	1.96
23046642--23046687	22	2.2	21	84	7	58	56	6	2	34	1.37
23050247--23050452	108	1.9	108	87	0	304	36	15	4	43	1.67
23051135--23051164	15	1.9	16	93	6	53	43	13	0	43	1.43
23051357--23051472	33	3.5	33	90	1	171	27	27	19	25	1.99
23053355--23053394	2	20.0	2	100	0	80	50	0	0	50	1.00
23053427--23053479	13	4.3	13	75	15	51	45	3	5	45	1.45
23060421--23060446	2	13.0	2	100	0	52	50	0	50	0	1.00
23067305--23067349	21	2.2	20	84	4	54	46	4	4	44	1.43
23067617--23067650	17	2.1	16	88	5	50	44	2	5	47	1.42
23067381--23067660	153	1.8	150	83	9	370	37	8	4	49	1.53
23077289--23077381	42	2.2	42	84	3	116	30	17	13	38	1.89
23077289--23077385	21	4.6	22	74	8	85	29	17	14	38	1.89
23077566--23077607	19	2.2	19	86	0	57	38	28	9	23	1.86
23077931--23077994	28	2.3	28	89	10	96	26	6	23	43	1.77
23078039--23078149	34	3.2	33	78	13	109	27	7	31	33	1.84
23078003--23078149	70	2.1	68	79	9	165	26	10	31	31	1.91
23079950--23080020	36	2.0	36	85	0	97	30	18	16	33	1.93
23084726--23084928	73	2.8	73	89	0	289	38	16	22	22	1.92
23087018--23087090	37	2.0	37	83	0	92	21	32	10	34	1.89
23087697--23087727	2	15.5	2	93	0	53	0	45	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23089041--23089085	21	2.1	22	83	4	56	73	4	22	0	1.01
23096924--23096951	2	14.0	2	100	0	56	50	0	0	50	1.00
23098286--23098340	15	3.5	16	75	18	53	20	1	3	74	1.06
23098486--23098654	80	2.1	78	81	4	187	35	16	18	29	1.93
23098567--23099275	98	7.2	98	88	2	940	35	14	19	30	1.92
23099165--23099433	143	1.9	141	85	2	369	33	13	20	31	1.92
23099507--23099598	21	4.3	21	83	5	114	26	10	29	33	1.90
23099256--23099558	122	2.5	122	80	8	364	34	12	20	33	1.89
23099384--23099742	165	2.2	165	88	2	524	33	12	21	32	1.91
23099500--23099602	43	2.4	44	75	12	124	27	12	28	32	1.93
23099665--23099742	21	3.7	21	82	3	84	26	14	26	32	1.94
23099528--23099787	144	1.8	144	87	3	389	33	13	20	32	1.91
23101840--23101880	4	10.8	4	82	10	50	0	17	2	80	0.82
23101844--23101880	15	2.4	16	90	4	58	0	16	2	81	0.81
23101840--23101881	11	3.7	11	87	6	57	0	16	2	80	0.81
23106379--23106421	18	2.4	18	85	11	54	32	2	2	62	1.20
23106886--23106923	2	19.5	2	89	5	60	47	0	2	50	1.15
23107613--23107639	8	3.4	8	100	0	54	14	0	0	85	0.61
23108648--23108843	73	2.7	73	87	0	277	39	17	20	22	1.92
23113677--23113837	68	2.4	67	77	4	178	31	24	18	25	1.98
23115980--23116053	21	3.5	21	92	0	112	27	16	18	37	1.92
23116642--23116695	2	27.0	2	100	0	108	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23123173--23123217	22	1.9	24	86	13	67	6	0	40	53	1.27
23127574--23127604	2	15.5	2	100	0	62	51	0	0	48	1.00
23129800--23129866	33	2.0	34	82	11	84	41	29	5	22	1.77
23132895--23133084	52	3.6	52	88	7	260	56	0	0	42	1.07
23132975--23133058	13	6.2	13	73	16	64	57	0	0	42	0.99
23134568--23134592	3	8.3	3	100	0	50	68	0	0	32	0.90
23134595--23134655	25	2.5	25	84	10	74	73	0	11	14	1.09
23136239--23136318	35	2.2	37	80	10	94	28	21	15	35	1.93
23136255--23136328	35	2.1	35	82	5	87	31	21	14	32	1.94
23141703--23141746	16	2.8	16	86	3	54	72	0	15	11	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103