genome.fa.s5.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  31  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11681266--11681348	43	1.9	43	92	0	139	27	16	33	21	1.95
11692625--11692886	55	4.8	54	89	4	373	22	14	35	27	1.93
11696105--11696166	25	2.5	25	91	0	97	17	20	12	48	1.80
11696323--11696407	34	2.5	34	84	7	118	38	22	11	27	1.89
11701983--11702229	124	2.0	123	96	0	449	37	18	10	33	1.86
11702302--11702331	2	15.0	2	100	0	60	50	0	0	50	1.00
11702831--11702885	25	2.2	25	90	0	83	14	23	14	47	1.81
11703014--11703091	34	2.3	34	79	0	93	35	26	10	26	1.89
11707613--11707715	38	2.7	37	80	10	118	22	36	16	24	1.94
11713391--11713418	13	2.2	13	100	0	56	64	14	14	7	1.48
11721564--11721593	15	1.9	16	93	6	53	13	0	6	80	0.91
11744420--11744525	54	2.0	54	88	0	158	23	41	13	21	1.88
11749829--11750037	35	6.0	35	85	3	253	33	7	13	45	1.71
11749830--11750030	107	1.9	103	86	4	285	32	6	13	46	1.71
11759266--11759302	16	2.2	17	90	4	58	70	0	10	18	1.16
11769033--11769086	27	2.0	27	100	0	108	22	11	33	33	1.89
11783936--11783976	21	1.9	22	90	5	66	51	7	24	17	1.70
11783936--11783982	21	2.2	21	84	3	58	55	8	21	14	1.66
11786291--11786321	11	2.8	11	90	0	53	35	0	9	54	1.33
11793545--11793702	72	2.2	73	90	3	250	24	15	34	25	1.95
11793688--11793773	36	2.5	36	83	9	99	22	13	33	30	1.93
11797323--11797409	35	2.5	35	86	0	120	26	35	16	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11798316--11798340	3	8.3	3	100	0	50	64	0	36	0	0.94
11799496--11799543	18	2.6	19	86	3	62	52	2	2	43	1.24
11799526--11799585	11	5.5	11	79	0	66	50	3	0	46	1.18
11799518--11799594	33	2.3	33	100	0	154	46	2	0	50	1.15
11807806--11807847	20	2.2	19	84	16	52	30	2	26	40	1.69
11807842--11807960	37	3.2	37	83	4	159	28	8	36	26	1.85
11808249--11808307	22	2.7	22	86	0	73	27	20	25	27	1.99
11811040--11811133	36	2.6	36	73	11	93	29	22	18	29	1.97
11811417--11811486	36	1.9	36	88	0	104	32	25	11	30	1.91
11811417--11811494	36	2.2	36	83	0	93	33	25	11	29	1.91
11814343--11814468	43	2.9	43	89	5	184	23	35	18	22	1.95
11820141--11820184	22	2.0	23	82	13	56	22	13	13	50	1.77
11827649--11827684	16	2.2	17	90	5	56	72	0	8	19	1.10
11829746--11829787	20	2.2	19	84	16	52	30	2	26	40	1.69
11829782--11829863	37	2.2	37	93	0	137	30	9	31	28	1.89
11829984--11830012	11	2.6	11	100	0	58	27	31	10	31	1.90
11832551--11832955	203	2.0	202	100	0	801	28	8	17	44	1.79
11833153--11833186	17	2.1	17	88	5	52	26	14	38	20	1.91
11836923--11836968	21	2.2	20	84	7	56	15	21	6	56	1.61
11836928--11836968	21	1.9	22	90	5	66	17	24	7	51	1.70
11836982--11837020	11	3.8	11	83	16	57	0	23	7	69	1.14
11841107--11841144	2	19.0	2	94	0	67	52	0	47	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11841242--11841280	2	19.5	2	94	0	69	53	0	46	0	1.00
11841041--11841306	135	2.0	133	97	2	498	36	18	19	24	1.94
11841927--11842042	35	3.4	35	65	13	98	25	11	37	25	1.89
11841884--11842038	66	2.3	66	97	0	301	21	12	40	25	1.88
11841896--11842003	31	3.4	31	65	14	83	24	13	37	24	1.92
11845732--11845861	42	3.1	42	92	0	206	21	32	24	21	1.98
11846440--11846487	23	2.1	23	84	7	62	35	31	0	33	1.58
11848839--11848864	8	3.2	8	100	0	52	65	0	0	34	0.93
11849813--11849869	14	4.1	14	76	10	64	75	0	24	0	0.80
11855618--11855749	43	3.1	43	83	4	158	21	34	17	25	1.95
11865563--11865694	43	3.1	43	88	0	183	21	35	18	25	1.95
11870252--11870288	2	18.5	2	100	0	74	51	0	0	48	1.00
11870200--11870395	105	1.9	106	97	2	369	34	10	15	38	1.82
11870361--11870398	2	19.0	2	100	0	76	50	0	0	50	1.00
11884139--11884384	42	5.8	43	81	3	268	23	34	19	22	1.97
11884158--11884391	84	2.8	84	89	1	344	23	33	20	22	1.97
11886589--11886758	29	5.8	28	75	10	142	41	10	9	38	1.72
11886622--11886758	59	2.3	60	83	5	179	41	10	8	39	1.70
11886900--11886932	17	1.9	17	88	11	50	39	3	15	42	1.62
11887756--11887969	92	2.3	93	90	1	326	34	31	11	22	1.90
11888010--11888121	50	2.2	50	80	6	118	6	31	0	61	1.27
11893810--11893893	42	2.0	43	88	2	125	17	33	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11895044--11895079	19	2.0	17	89	10	54	13	2	0	83	0.76
11895176--11895465	92	3.2	92	88	0	373	36	28	8	25	1.86
11895552--11895638	18	5.1	18	70	13	67	0	27	5	66	1.14
11895549--11895625	23	3.2	23	68	20	66	0	28	5	66	1.13
11901702--11901871	73	2.3	74	88	3	247	37	22	17	22	1.94
11904805--11904919	37	3.1	37	90	5	178	25	36	10	27	1.89
11914714--11914747	16	2.1	16	88	0	50	82	0	14	2	0.79
11914739--11914801	25	2.5	25	87	5	92	50	12	20	15	1.77
11921050--11921091	20	2.0	20	86	4	57	40	9	2	47	1.49
11922177--11922210	15	2.3	15	90	5	52	58	5	11	23	1.55
11922867--11922981	37	3.1	37	92	5	196	25	39	9	26	1.86
11931507--11931667	72	2.2	73	89	1	243	36	22	18	22	1.95
11931507--11931695	73	2.6	72	82	10	233	35	21	19	23	1.95
11936911--11937070	54	3.0	54	87	0	248	27	40	13	18	1.89
11944938--11945012	24	3.2	24	62	11	64	44	16	10	28	1.80
11944934--11945024	47	2.0	46	100	0	173	46	17	8	26	1.77
11954127--11954151	13	1.9	13	100	0	50	44	0	8	48	1.32
11958314--11958389	32	2.4	32	95	0	134	31	26	6	35	1.82
11960199--11960258	25	2.4	25	80	0	66	25	28	18	28	1.98
11961981--11962024	20	2.2	20	84	8	54	2	40	0	56	1.11
11962778--11962837	31	1.9	31	89	0	93	26	28	3	41	1.71
11962779--11962855	31	2.5	31	84	0	91	29	27	2	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11963510--11963716	27	7.5	27	75	10	177	42	9	16	30	1.81
11963547--11963716	55	3.1	54	74	12	168	43	9	15	31	1.79
11963547--11963716	82	2.1	83	80	7	195	43	9	15	31	1.79
11964136--11964168	17	2.0	17	88	5	50	9	24	0	66	1.20
11967788--11967866	40	2.0	41	87	5	117	18	20	22	37	1.94
11989347--11989386	21	1.9	21	89	0	62	45	17	12	25	1.83
11990406--11990506	36	2.8	36	89	0	148	16	15	42	24	1.88
11990569--11990606	2	19.0	2	100	0	76	50	0	0	50	1.00
11990770--11990808	2	19.0	2	94	5	69	48	2	0	48	1.15
11995216--11995383	29	5.8	28	76	8	165	41	8	11	38	1.72
11995212--11995383	59	2.9	59	83	5	208	41	9	11	38	1.73
11995525--11995557	17	1.9	17	88	11	50	39	3	15	42	1.62
11996714--11996812	36	2.8	36	85	0	126	26	38	15	20	1.92
12011709--12011746	19	2.0	19	89	0	58	42	31	0	26	1.56
12017434--12017597	77	2.1	77	90	2	258	39	8	12	39	1.74
12028121--12028163	5	8.8	5	85	10	54	18	2	0	79	0.85
12028701--12028769	15	4.4	16	71	20	56	0	26	1	72	0.93
12028725--12028757	5	6.6	5	100	0	66	0	21	0	78	0.75
12028968--12029020	13	4.1	13	78	4	54	3	7	5	83	0.92
12029371--12029428	11	5.3	11	78	21	68	6	12	1	79	1.00
12029371--12029446	20	3.6	19	80	16	71	9	9	2	78	1.04
12029403--12029474	9	7.4	10	72	10	51	16	5	1	76	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12029693--12030256	59	9.5	59	86	1	680	36	19	13	30	1.91
12029740--12030256	237	2.2	237	84	3	664	35	19	14	30	1.92
12039913--12039960	22	2.1	24	88	7	73	0	29	0	70	0.87
12039910--12039970	13	4.6	14	74	17	58	0	32	0	67	0.91
12040600--12040658	4	14.8	4	76	16	52	25	3	0	71	1.02
12040585--12040660	20	3.8	20	76	15	70	22	3	0	73	0.99
12040583--12040671	7	13.8	6	73	19	56	20	3	1	75	1.01
12040573--12040638	32	2.1	32	83	11	82	16	6	0	77	0.96
12040609--12040672	10	6.8	9	72	20	51	23	1	1	73	1.01
12040602--12040668	20	3.7	17	76	19	64	23	2	1	71	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103