genome.fa.s5.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  94  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34545464--34545530	9	7.1	9	73	20	57	0	29	1	68	0.98
34545471--34545530	24	2.3	27	78	18	65	0	30	1	68	0.99
34545560--34545606	21	2.4	21	82	10	55	0	27	2	70	0.99
34545808--34545865	18	3.1	17	77	22	55	0	29	1	68	0.99
34545812--34545853	20	2.0	20	86	13	59	0	28	2	69	1.01
34545810--34545870	24	2.7	24	77	7	65	0	31	1	67	1.01
34545903--34545971	10	7.2	9	73	14	50	0	27	4	68	1.09
34545238--34546271	345	3.0	345	96	1	1889	6	31	7	54	1.54
34546173--34546217	8	5.1	9	80	20	51	0	28	0	71	0.87
34546156--34546220	21	3.0	22	82	11	71	0	32	1	66	1.01
34546363--34546405	21	2.0	21	81	0	50	0	30	2	67	1.03
34546184--34547102	99	9.8	96	71	18	377	5	33	2	58	1.35
34546441--34546578	12	11.6	12	68	20	53	2	28	1	66	1.14
34546440--34546722	15	17.8	15	66	22	84	4	31	1	62	1.24
34546348--34546479	57	2.4	52	75	19	124	3	29	1	65	1.19
34546414--34546562	75	2.0	76	90	4	239	4	31	2	62	1.25
34546523--34546578	22	2.5	21	76	18	51	0	28	1	69	0.98
34546381--34546657	81	3.1	90	69	20	147	5	29	1	63	1.22
34546614--34546648	12	2.9	12	91	0	52	0	28	0	71	0.86
34546543--34546688	78	1.9	78	91	2	240	6	32	0	60	1.26
34546533--34546720	78	2.3	83	84	9	194	4	32	1	60	1.27
34546614--34546842	84	2.7	86	78	9	240	2	35	2	59	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34546785--34546844	30	2.0	31	86	3	86	0	31	1	66	1.01
34546440--34546860	7	53.6	8	62	25	52	4	33	1	60	1.25
34546744--34547106	99	3.7	100	81	6	393	6	33	3	57	1.39
34546986--34547047	27	2.3	27	80	5	72	3	32	1	62	1.20
34547002--34547147	72	2.1	69	80	11	154	9	34	2	53	1.48
34547030--34547163	66	2.0	67	84	5	173	11	29	2	55	1.49
34551374--34551411	17	2.2	17	90	0	58	50	0	0	50	1.00
34551398--34551457	23	2.7	21	84	7	66	51	3	1	43	1.28
34554258--34554288	1	31.0	1	100	0	62	0	0	100	0	0.00
34567567--34567591	3	8.3	3	100	0	50	68	0	32	0	0.90
34573064--34573096	2	16.5	2	100	0	66	51	0	0	48	1.00
34578255--34578293	18	2.2	18	95	0	69	46	7	23	23	1.78
34583252--34583300	23	2.1	23	85	7	64	46	0	0	53	1.00
34583579--34583628	21	2.3	21	82	6	55	40	0	0	60	0.97
34593596--34593687	30	3.1	30	82	3	96	52	5	9	32	1.57
34620147--34620189	16	2.5	18	85	7	54	37	0	2	60	1.10
34620153--34620189	18	2.0	18	89	5	56	35	0	2	62	1.10
34632205--34632389	89	2.1	88	83	6	230	25	7	19	48	1.74
34642792--34642916	61	2.0	61	100	0	250	51	14	8	25	1.71
34648650--34648706	20	3.0	19	76	16	55	31	0	3	64	1.10
34650547--34650592	22	2.1	22	100	0	92	39	26	8	26	1.85
34655994--34656048	26	2.1	26	82	0	65	38	12	0	49	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34656182--34656241	28	2.2	28	82	8	79	66	1	0	31	1.01
34659443--34659482	13	2.9	15	78	17	50	32	15	0	52	1.43
34662545--34662617	29	2.5	28	77	14	78	35	2	4	57	1.32
34662920--34662953	2	17.0	2	100	0	68	50	0	0	50	1.00
34662951--34662975	12	2.1	12	100	0	50	8	0	40	52	1.31
34670265--34670311	16	2.8	17	81	12	62	36	19	36	8	1.82
34670937--34670979	21	2.0	20	86	8	59	53	2	2	41	1.26
34670937--34670985	20	2.4	21	83	12	59	53	2	2	42	1.24
34670937--34670992	21	2.7	19	76	23	51	50	1	1	46	1.22
34671042--34671092	2	25.5	2	91	0	84	49	1	1	47	1.24
34683316--34683346	2	15.5	2	100	0	62	48	0	0	51	1.00
34683845--34683876	2	16.0	2	100	0	64	50	0	0	50	1.00
34684746--34684793	24	2.0	23	84	4	60	47	20	27	4	1.68
34686304--34686339	19	1.9	19	88	5	56	25	0	8	66	1.19
34686407--34686474	30	2.3	29	85	7	84	52	4	8	33	1.52
34686425--34686481	30	1.9	30	92	7	98	56	0	10	33	1.34
34686426--34686507	29	2.8	28	80	14	78	53	1	10	34	1.44
34694063--34694122	29	2.0	30	83	3	77	56	0	8	35	1.29
34713869--34713945	38	2.0	38	94	0	136	32	1	16	49	1.54
34714795--34714849	22	2.5	22	77	11	58	23	9	20	47	1.78
34715056--34715118	23	2.8	22	73	4	63	25	7	23	42	1.81
34715148--34715186	20	2.0	20	94	0	69	30	30	10	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34715128--34715203	23	3.5	22	75	15	61	36	26	9	27	1.87
34715234--34715288	22	2.5	22	87	0	74	43	16	10	29	1.82
34715246--34715300	22	2.5	21	82	8	65	49	18	9	23	1.76
34715417--34715542	60	2.1	60	85	5	166	41	18	7	32	1.79
34719103--34719158	28	2.0	28	100	0	112	35	28	7	28	1.84
34721101--34721218	61	1.9	61	94	0	209	42	16	12	28	1.84
34723011--34723054	18	2.4	18	81	7	54	65	0	4	29	1.12
34725496--34725539	16	2.8	16	89	3	63	29	29	31	9	1.88
34728084--34728175	2	46.0	2	81	10	91	48	3	45	1	1.25
34730183--34730215	17	2.0	17	94	5	59	42	0	0	57	0.98
34734797--34735529	183	4.0	183	88	1	1092	20	21	19	38	1.94
34739951--34739992	2	21.5	2	95	4	77	52	0	0	47	1.00
34746408--34746449	22	1.9	22	90	0	66	19	9	16	54	1.69
34746526--34746557	12	2.7	12	95	0	55	34	0	0	65	0.93
34746632--34746672	20	2.1	19	86	4	55	29	0	0	70	0.87
34746718--34746817	9	11.1	9	80	4	112	31	10	18	41	1.83
34746718--34746817	18	5.6	18	87	0	155	31	10	18	41	1.83
34748309--34748376	30	2.2	32	86	7	95	60	0	2	36	1.12
34749076--34749142	33	2.0	34	88	2	100	19	13	49	17	1.80
34753885--34753927	22	2.0	22	85	0	59	51	9	9	30	1.65
34754729--34754783	29	2.0	25	86	13	74	67	0	1	30	1.01
34762135--34762178	24	1.9	23	86	9	63	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34766419--34766507	38	2.3	39	84	3	110	49	25	2	22	1.61
34766435--34766632	95	2.1	95	85	3	265	46	23	2	28	1.63
34776028--34776463	217	2.0	218	97	0	820	25	17	24	32	1.97
34785205--34785265	29	2.2	29	85	8	83	55	0	1	42	1.09
34803923--34804004	43	1.9	43	82	9	105	35	3	6	54	1.43
34811218--34811285	28	2.4	28	95	0	127	44	7	7	41	1.60
34815703--34815924	100	2.2	100	86	4	295	32	11	16	39	1.84
34822146--34822304	79	2.0	79	81	2	185	35	18	9	36	1.83
34838874--34838939	32	2.1	32	88	0	96	42	16	1	39	1.58
34854954--34855031	34	2.3	34	90	0	120	25	12	23	38	1.90
34855479--34855861	34	11.5	34	72	7	257	34	24	15	25	1.95
34858191--34858234	2	22.0	2	100	0	88	50	0	0	50	1.00
34858999--34859031	16	2.1	16	94	0	57	33	18	9	39	1.82
34869862--34870238	34	11.3	34	76	8	265	33	24	16	25	1.95
34870088--34870142	27	2.0	27	89	0	83	30	23	18	27	1.97
34870054--34870176	61	2.0	61	93	0	210	33	23	17	26	1.96
34869930--34870210	95	2.9	95	79	9	293	33	25	17	24	1.96
34873532--34873603	31	2.4	31	88	6	103	37	13	9	38	1.78
34873510--34873603	30	3.1	30	81	7	109	39	11	10	38	1.77
34873579--34873652	26	3.0	25	77	11	71	29	14	14	40	1.87
34873718--34873840	45	2.7	45	79	2	113	26	19	20	34	1.96
34874436--34874468	16	2.1	16	94	0	57	33	18	9	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34889198--34889261	18	3.6	16	80	16	56	67	0	7	25	1.17
34898346--34898423	24	3.2	24	94	0	129	41	15	29	14	1.86
34906018--34906129	20	5.6	19	77	9	66	61	8	5	25	1.45
34906042--34906129	20	4.4	20	78	5	88	63	9	3	23	1.39
34906042--34906129	40	2.2	40	83	4	106	63	9	3	23	1.39
34907336--34907363	2	14.0	2	100	0	56	50	0	0	50	1.00
34908518--34908582	30	2.1	31	91	2	105	32	1	4	61	1.26
34908802--34908870	30	2.3	29	80	9	77	60	2	4	31	1.31
34921453--34921481	3	9.7	3	100	0	58	65	0	0	34	0.93
34925555--34925597	21	2.0	21	81	0	50	37	6	6	48	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103