genome.fa.s5.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  7  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2669544--2669589	23	2.1	21	84	15	58	47	17	8	26	1.76
2670208--2670243	16	2.2	17	90	5	56	83	5	11	0	0.80
2677083--2677125	22	2.0	22	81	9	52	4	44	13	37	1.65
2680822--2680880	30	2.0	30	100	0	118	38	10	0	50	1.36
2682247--2682776	264	2.0	265	88	3	782	33	15	15	34	1.90
2686730--2686799	35	2.0	35	100	0	140	14	28	11	45	1.79
2688205--2689341	228	5.0	227	84	1	1139	19	24	26	29	1.99
2698616--2698652	18	2.1	18	90	10	58	54	0	0	45	1.00
2704895--2705105	109	1.9	108	88	0	314	42	3	15	38	1.65
2706750--2706849	32	3.3	30	81	10	116	56	4	4	36	1.37
2706770--2706850	29	2.8	30	81	9	105	60	3	2	33	1.27
2708517--2708541	2	12.5	2	100	0	50	48	0	52	0	1.00
2713956--2713999	2	22.0	2	100	0	88	50	0	0	50	1.00
2715851--2716059	78	2.6	80	89	2	314	34	14	19	31	1.92
2723013--2723056	2	22.0	2	100	0	88	50	0	0	50	1.00
2725508--2725551	2	22.0	2	90	0	70	0	45	0	54	0.99
2729311--2729349	19	2.0	21	85	10	55	7	17	5	69	1.32
2730554--2730580	2	13.5	2	100	0	54	51	0	48	0	1.00
2735309--2735397	1	89.0	1	84	0	79	1	87	2	3	0.53
2738517--2738553	19	1.9	19	88	0	56	64	13	13	8	1.48
2760241--2760280	18	2.2	18	86	8	55	62	2	25	10	1.39
2765487--2765527	18	2.3	18	91	4	66	24	2	0	73	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2765491--2765529	16	2.4	17	86	4	53	28	2	0	69	1.02
2768309--2768351	22	2.0	22	81	9	52	41	18	0	39	1.51
2768672--2768737	25	2.6	25	76	9	71	48	1	0	50	1.10
2770205--2770306	54	1.9	51	90	5	159	18	15	32	33	1.93
2774230--2774259	1	30.0	1	100	0	60	0	100	0	0	0.00
2786196--2786262	35	1.9	35	93	0	116	14	25	20	38	1.91
2788361--2788408	20	2.5	20	86	3	62	52	6	2	39	1.39
2792332--2792423	36	2.6	36	77	3	96	41	15	21	21	1.90
2794714--2794776	15	4.1	16	77	4	58	68	4	0	26	1.10
2795436--2795488	27	2.0	27	88	0	79	28	11	11	49	1.73
2795605--2795653	25	2.0	25	87	0	71	22	24	6	46	1.74
2801917--2801969	27	2.0	27	88	0	79	28	13	15	43	1.84
2801997--2802022	11	2.4	11	100	0	52	19	0	19	61	1.35
2809642--2809679	19	2.0	19	89	0	58	31	21	26	21	1.98
2811094--2811126	15	2.2	15	89	10	50	57	3	0	39	1.14
2812682--2812724	22	2.0	22	86	9	61	18	6	25	48	1.73
2816567--2816617	19	2.6	19	87	6	66	45	3	0	50	1.20
2818196--2818242	17	2.8	16	84	9	58	25	4	0	70	1.05
2818208--2818241	17	1.9	17	94	5	59	23	0	0	76	0.79
2818207--2818270	22	2.9	22	81	11	69	18	4	1	75	1.06
2818405--2818441	15	2.5	15	86	0	56	43	0	0	56	0.99
2835446--2835506	30	2.1	29	84	9	79	44	0	3	52	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2838508--2838538	15	2.1	15	93	0	53	22	12	3	61	1.46
2839046--2839085	19	2.0	20	85	4	55	65	2	0	32	1.06
2841932--2841963	7	4.4	7	96	4	55	0	28	12	59	1.34
2843631--2843801	78	2.2	77	76	12	181	25	18	26	29	1.98
2863042--2863153	33	3.0	39	75	18	121	65	0	3	30	1.16
2863065--2863138	33	2.2	34	92	4	123	68	0	2	28	1.03
2863282--2863335	23	2.4	22	82	14	65	40	5	0	53	1.24
2863296--2863341	23	1.9	25	82	8	60	45	2	0	52	1.13
2875277--2875313	16	2.2	18	85	9	51	13	5	0	81	0.86
2887586--2887614	3	9.7	3	100	0	58	34	0	0	65	0.93
2894034--2894089	26	2.2	26	96	0	103	14	23	10	51	1.73
2901008--2901215	104	2.0	103	93	0	353	46	4	9	38	1.56
2900798--2901430	319	2.0	320	87	4	902	45	5	8	40	1.57
2920823--2920872	26	1.9	26	87	0	73	50	6	8	36	1.57
2927600--2927848	39	6.4	39	82	0	309	14	17	20	47	1.82
2927600--2927848	78	3.2	78	87	1	356	14	17	20	47	1.82
2928567--2928673	53	2.0	53	94	0	187	27	11	12	49	1.74
2929974--2930004	2	16.0	2	93	6	55	51	0	0	48	1.00
2933876--2933918	17	2.5	16	85	11	50	0	23	2	74	0.93
2952477--2952512	18	2.0	18	88	0	54	50	0	0	50	1.00
2953121--2953165	19	2.4	19	96	0	81	33	26	13	26	1.93
2957874--2957898	2	12.5	2	100	0	50	0	48	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2971949--2971992	20	2.3	19	85	14	56	59	0	0	40	0.98
2972545--2972579	17	2.0	18	88	5	54	54	5	0	40	1.24
2982599--2982659	25	2.3	27	80	11	72	59	6	4	29	1.44
2982784--2982851	20	3.3	20	83	8	84	52	0	0	47	1.00
2982781--2982851	22	3.3	22	86	11	103	53	0	0	46	1.00
2989100--2989563	234	2.0	234	92	0	775	24	19	24	31	1.98
3005422--3005499	31	2.5	32	81	10	99	30	17	3	47	1.66
3008880--3008914	18	1.9	18	88	0	52	42	2	14	40	1.60
3011716--3011742	13	2.1	13	100	0	54	25	7	22	44	1.79
3015070--3015103	15	2.3	15	89	0	50	0	47	0	52	1.00
3024494--3024552	2	30.0	2	94	3	102	47	0	0	50	1.01
3037570--3037755	62	3.0	62	91	0	300	40	13	12	33	1.82
3053905--3053937	8	4.1	8	100	0	66	27	12	0	60	1.32
3053905--3053969	8	7.1	9	83	16	57	30	10	3	55	1.50
3059693--3059763	28	2.6	29	76	10	78	56	1	1	40	1.17
3060524--3060549	13	2.0	13	100	0	52	46	0	15	38	1.46
3074837--3074913	2	38.0	2	94	2	136	49	1	0	48	1.09
3082640--3082668	14	2.0	15	93	6	51	27	0	0	72	0.85
3082688--3082727	20	2.0	21	90	5	64	30	0	5	65	1.14
3083558--3083583	3	8.7	3	100	0	52	69	0	0	30	0.89
3090143--3090218	2	38.0	2	92	5	127	48	1	0	48	1.09
3099327--3099360	18	1.9	17	94	5	59	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3100500--3100580	29	2.8	29	80	1	90	44	0	0	55	0.99
3100683--3100720	18	2.1	18	85	9	51	36	0	13	50	1.42
3111733--3111793	1	61.0	1	93	0	104	96	0	1	1	0.24
3115535--3115715	89	2.0	90	92	4	303	37	13	9	39	1.78
3119072--3119133	24	2.7	23	81	16	74	41	0	1	56	1.09
3119213--3119300	33	2.7	33	85	0	113	45	3	3	47	1.36
3119340--3119443	30	3.6	29	75	10	106	54	0	8	36	1.31
3123104--3123169	32	2.1	32	97	0	123	37	15	21	25	1.92
3123117--3123168	16	3.2	16	73	10	61	42	15	23	19	1.89
3146145--3146217	30	2.3	31	82	17	89	24	5	0	69	1.09
3146150--3146226	22	3.5	22	72	12	61	23	5	0	71	1.06
3146434--3146489	13	4.3	13	78	14	62	25	5	0	69	1.09
3146919--3146972	2	27.5	2	85	10	76	44	0	3	51	1.19
3148306--3148351	22	2.1	21	84	4	56	34	2	0	63	1.07
3150499--3150540	21	2.0	21	90	9	68	38	28	14	19	1.90
3150593--3150644	26	2.0	26	88	0	77	42	7	7	42	1.62
3154781--3154814	2	16.5	2	93	6	59	50	2	0	47	1.16
3154848--3154874	14	1.9	14	100	0	54	37	7	3	51	1.48
3155330--3155624	159	1.9	158	82	6	382	35	7	19	36	1.81
3158869--3158916	24	2.0	24	91	0	78	12	43	10	33	1.77
3159039--3159073	18	1.9	18	94	0	61	42	17	11	28	1.83
3159093--3159198	20	5.2	20	80	10	79	41	0	0	57	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3159149--3159198	20	2.5	20	100	0	100	34	0	0	66	0.92
3164782--3165167	186	2.1	186	84	2	488	23	25	7	43	1.80
3166012--3166183	27	6.5	26	74	9	107	19	30	23	26	1.98
3166038--3166184	54	2.8	52	78	6	152	20	29	22	27	1.98
3166012--3166242	27	8.7	26	71	9	103	19	29	23	28	1.98
3166109--3166262	79	1.9	81	81	2	186	18	27	23	30	1.97
3166223--3166289	27	2.5	27	80	0	80	16	25	26	31	1.96
3175024--3175098	36	2.1	36	84	0	96	25	21	14	38	1.91
3175165--3175191	12	2.2	12	100	0	54	33	22	25	18	1.97
3177146--3177183	18	2.1	18	90	5	58	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103