genome.fa.s5.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  84  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31136632--31136731	24	4.1	24	79	6	103	6	46	7	41	1.55
31136699--31136770	34	2.1	34	89	0	108	5	50	5	38	1.49
31136733--31136794	24	2.6	24	86	0	79	4	50	8	37	1.54
31136674--31136821	58	2.5	58	79	8	174	5	47	5	41	1.49
31136754--31136821	34	2.0	34	82	0	82	5	51	4	38	1.46
31142537--31142743	101	2.0	102	91	2	335	36	13	9	40	1.77
31149510--31149536	7	3.9	7	100	0	54	25	0	0	74	0.83
31149736--31149780	13	3.5	13	81	6	56	24	2	0	73	0.95
31149832--31149877	15	2.9	17	84	9	53	28	2	2	67	1.14
31150167--31150209	13	3.3	13	81	12	52	0	25	0	74	0.82
31150162--31150209	16	3.1	15	77	22	55	0	25	0	75	0.81
31162489--31162536	23	2.1	23	100	0	96	27	0	31	41	1.56
31162623--31162683	29	2.1	29	82	11	72	50	3	1	44	1.28
31166746--31166791	23	2.0	23	95	0	83	39	13	10	36	1.79
31166916--31166949	10	3.3	10	92	8	59	88	0	11	0	0.52
31166916--31166949	11	3.2	11	87	4	52	88	0	11	0	0.52
31166906--31166949	21	2.0	21	91	8	70	81	2	13	2	0.88
31167472--31167535	17	3.9	17	80	13	73	50	0	0	50	1.00
31167486--31167525	10	4.4	10	84	15	52	52	0	0	47	1.00
31167472--31167535	26	2.6	26	85	11	82	50	0	0	50	1.00
31167472--31167535	8	7.9	8	78	15	69	50	0	0	50	1.00
31167638--31167677	21	1.9	21	90	10	64	2	25	0	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31178831--31178881	23	2.2	23	82	3	57	41	9	7	41	1.67
31178843--31178888	23	2.0	23	86	0	65	39	8	10	41	1.71
31182475--31182508	12	2.7	13	81	9	52	0	29	0	70	0.87
31185741--31185774	3	11.3	3	100	0	68	32	0	0	67	0.91
31187887--31187934	22	2.2	22	92	7	80	39	10	4	45	1.58
31197649--31197704	2	28.0	2	80	7	60	48	3	44	1	1.30
31203467--31203517	11	4.6	11	80	11	52	52	7	19	19	1.70
31203467--31203517	22	2.3	22	83	6	68	52	7	19	19	1.70
31203641--31203683	22	1.9	23	85	4	61	51	0	30	18	1.47
31204837--31204887	22	2.2	24	86	13	72	21	29	0	49	1.50
31205253--31205291	19	2.1	19	100	0	78	15	15	20	48	1.81
31209820--31209846	13	2.1	13	100	0	54	14	25	29	29	1.95
31218297--31218322	6	4.3	6	100	0	52	34	15	0	50	1.45
31220153--31220244	45	2.0	45	87	0	130	23	14	18	43	1.87
31223550--31223677	62	2.1	62	94	2	222	53	15	12	18	1.73
31228905--31229124	81	2.7	81	89	1	325	40	10	7	42	1.66
31229472--31229529	23	2.4	23	88	11	82	36	18	22	22	1.95
31230418--31230524	43	2.5	43	92	6	173	63	9	7	19	1.48
31231843--31231872	16	1.9	16	93	6	53	30	0	6	63	1.20
31232094--31232141	14	3.4	13	78	16	51	37	2	2	58	1.22
31232082--31232141	28	2.1	29	87	9	88	36	3	1	58	1.25
31234967--31235006	18	2.2	18	91	8	64	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31235023--31235069	14	3.6	14	77	13	55	63	0	36	0	0.94
31242837--31242928	45	2.0	45	87	0	130	23	14	18	43	1.87
31246251--31246376	59	2.1	62	89	5	195	55	15	9	19	1.67
31251829--31251862	17	2.0	17	88	0	50	79	2	8	8	1.03
31251822--31251846	10	2.5	10	100	0	50	80	0	12	8	0.92
31258846--31258885	4	10.0	4	88	0	62	25	0	27	47	1.52
31270856--31270939	37	2.3	37	97	0	159	35	26	8	29	1.86
31270909--31270995	28	3.1	28	76	1	86	32	24	11	32	1.91
31271538--31271602	22	3.0	22	70	17	62	23	16	10	49	1.77
31271849--31271886	20	1.9	19	94	5	67	36	23	15	23	1.94
31275993--31276622	339	1.9	338	99	0	1242	34	18	9	37	1.83
31285890--31285992	37	2.8	37	82	7	127	37	23	5	33	1.79
31285961--31286017	27	2.1	27	83	6	71	40	24	7	28	1.81
31291372--31291408	2	19.0	2	94	5	67	48	0	0	51	1.00
31299369--31299427	18	3.3	18	85	2	75	45	11	8	33	1.71
31300997--31301029	15	2.2	15	89	10	50	57	3	0	39	1.14
31303610--31303695	3	28.3	3	71	19	54	26	5	1	66	1.22
31303790--31303837	14	3.2	14	78	21	53	29	4	0	66	1.10
31305056--31305131	25	3.0	26	94	3	129	15	34	7	42	1.76
31317311--31317356	2	23.0	2	91	8	76	47	2	0	50	1.13
31317758--31317888	55	2.4	55	79	5	149	12	13	31	42	1.81
31317920--31318071	23	6.3	23	80	11	171	23	21	31	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31317920--31318045	49	2.6	49	94	0	216	21	20	33	24	1.97
31318056--31318137	31	2.7	32	77	11	82	30	18	18	32	1.95
31322141--31322572	31	14.0	31	80	4	451	37	21	16	24	1.93
31322149--31322572	93	4.6	93	89	2	573	37	22	16	24	1.93
31323321--31323397	31	2.5	31	86	0	109	28	18	29	23	1.97
31323322--31323490	31	5.5	31	73	4	99	26	17	30	26	1.97
31323656--31323717	14	4.3	13	75	16	52	51	1	11	35	1.47
31325271--31325548	31	8.6	31	76	7	259	39	20	17	23	1.92
31325903--31326256	156	2.3	156	87	2	487	31	20	16	32	1.94
31330477--31330649	31	5.6	31	87	1	213	36	20	16	25	1.94
31330477--31330645	93	1.8	93	85	5	243	37	20	16	26	1.93
31331224--31331422	24	8.5	24	67	16	103	21	31	20	26	1.98
31331217--31331286	23	3.0	22	76	19	79	24	28	22	24	1.99
31331221--31331398	47	3.8	47	85	0	205	21	31	20	25	1.98
31331273--31331516	117	2.1	118	83	6	316	22	32	17	27	1.96
31331227--31331563	164	2.0	164	82	5	403	23	32	17	26	1.96
31331388--31331687	94	3.2	92	84	3	348	23	33	15	27	1.95
31331395--31331663	141	1.9	141	79	6	303	23	33	15	27	1.94
31331395--31331644	47	5.3	47	80	1	268	23	34	14	27	1.94
31332520--31332580	32	1.9	32	96	0	113	44	16	6	32	1.73
31349327--31349384	29	2.0	29	93	0	98	48	10	31	10	1.71
31350880--31350904	5	5.0	5	100	0	50	20	20	40	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31356699--31356732	16	2.1	16	88	0	50	52	5	2	38	1.41
31357361--31357403	19	2.1	21	84	16	56	51	0	0	48	1.00
31357583--31357626	18	2.4	18	85	11	54	47	0	6	45	1.29
31358028--31358071	22	1.9	23	86	9	63	29	4	9	56	1.50
31360171--31360219	23	2.1	23	96	0	89	40	10	8	40	1.69
31367167--31367196	15	2.0	15	93	0	51	30	43	0	26	1.55
31375409--31375443	16	2.2	16	89	0	52	62	2	0	34	1.10
31376378--31376421	23	1.9	23	85	0	61	15	11	45	27	1.81
31390574--31390601	6	4.7	6	100	0	56	53	0	14	32	1.41
31394480--31394533	21	2.6	21	79	5	56	18	1	27	51	1.56
31394483--31394648	42	4.0	42	76	3	122	22	6	25	45	1.75
31394756--31394814	21	2.8	21	78	0	55	27	6	20	45	1.76
31394917--31394970	21	2.6	21	75	0	54	33	3	16	46	1.65
31407946--31408057	59	1.9	59	92	1	188	31	15	11	41	1.82
31412715--31412762	2	25.0	2	87	8	64	52	4	0	43	1.20
31415950--31416036	14	5.9	14	69	19	61	72	5	2	19	1.16
31424915--31425052	66	2.1	66	97	0	258	20	10	20	49	1.77
31434709--31434764	24	2.3	24	93	6	96	42	5	21	30	1.75
31440772--31440820	16	3.2	15	81	13	55	55	2	4	38	1.31
31440777--31440820	16	2.8	16	83	12	56	54	2	4	38	1.33
31440923--31440964	15	2.8	15	82	7	50	61	0	2	35	1.09
31442239--31442314	29	2.7	29	81	4	75	35	7	14	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31442252--31442314	29	2.2	29	88	0	90	33	7	12	46	1.71
31442332--31442441	54	2.0	54	87	0	157	31	21	14	31	1.94
31442426--31442470	21	2.1	21	95	0	81	31	24	20	24	1.98
31442465--31442511	24	2.0	24	91	0	76	23	14	19	42	1.88
31442472--31442522	24	2.1	24	85	7	68	31	13	15	39	1.87
31443369--31443410	21	2.0	21	86	9	59	19	0	2	78	0.86
31444220--31444390	37	4.6	37	82	8	215	6	33	16	43	1.74
31444235--31444371	73	1.9	72	89	7	217	7	29	19	43	1.78
31445221--31445381	45	3.6	45	86	0	223	31	18	16	33	1.94
31453860--31454814	199	4.8	198	83	3	1051	35	20	11	32	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103