genome.fa.s5.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  41  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15373352--15373394	21	2.2	20	84	12	54	18	23	16	41	1.89
15374128--15374177	23	2.2	23	100	0	100	24	36	0	40	1.55
15375345--15375387	9	4.9	9	82	5	52	32	41	2	23	1.67
15375386--15375510	43	2.9	43	84	2	153	20	37	20	22	1.94
15392038--15392141	54	1.9	54	96	0	190	25	37	15	22	1.93
15393102--15393153	20	2.6	20	81	6	61	32	11	26	28	1.91
15398632--15398787	54	2.9	54	87	0	213	25	41	14	19	1.89
15402228--15402313	40	2.2	40	95	0	154	32	23	18	25	1.97
15402243--15402330	40	2.2	40	91	0	140	37	22	17	22	1.94
15407449--15407474	2	13.0	2	100	0	52	50	0	0	50	1.00
15408698--15408727	10	3.0	10	90	0	51	0	23	10	66	1.21
15420787--15420884	46	2.1	46	100	0	196	32	0	20	46	1.51
15421574--15421619	2	23.0	2	86	0	65	45	6	0	47	1.28
15428206--15428796	293	2.0	297	95	1	1064	41	16	12	28	1.85
15447160--15447238	40	2.0	40	90	5	124	35	24	21	18	1.96
15447546--15447607	29	2.1	31	85	11	85	67	9	4	17	1.36
15450367--15450508	74	1.9	74	88	2	214	24	15	17	42	1.88
15450796--15452347	171	9.1	169	80	5	1550	33	14	15	36	1.88
15450765--15452347	341	4.6	339	80	6	1528	33	14	15	36	1.88
15450796--15452347	512	3.0	497	79	6	1576	33	14	15	36	1.88
15452723--15452782	28	2.1	30	84	6	79	31	10	16	41	1.81
15456664--15456773	43	2.6	43	83	2	132	20	35	19	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15458472--15458605	43	3.1	41	77	3	124	24	15	32	26	1.95
15459255--15459319	30	2.2	29	83	5	78	29	9	20	41	1.83
15469403--15469729	171	1.9	173	85	2	453	31	14	15	38	1.88
15475530--15475595	33	1.9	35	85	11	93	0	31	0	68	0.90
15476804--15478726	171	11.3	169	79	6	1827	33	14	15	36	1.87
15476794--15478806	683	3.0	683	87	2	2837	34	14	14	37	1.87
15481594--15483816	171	13.0	171	79	4	2171	33	13	15	37	1.87
15484742--15484801	22	2.7	22	86	0	84	26	21	21	30	1.99
15484746--15484810	22	3.0	21	80	8	69	26	21	18	33	1.96
15487610--15487736	55	2.3	55	95	1	229	43	7	25	23	1.79
15488007--15488045	19	2.0	20	90	5	62	74	0	25	0	0.82
15493554--15495694	171	12.6	170	71	11	1091	33	14	14	37	1.87
15493554--15495695	341	6.3	339	75	9	1286	33	14	14	37	1.87
15494240--15495143	500	1.8	499	81	4	1151	33	15	14	36	1.88
15503856--15503901	20	2.3	20	88	7	67	32	4	17	45	1.68
15506796--15506829	13	2.6	13	85	0	50	50	2	2	44	1.32
15506841--15507075	35	6.7	35	80	5	244	42	14	8	34	1.76
15506974--15507027	18	3.1	18	67	5	56	44	14	11	29	1.80
15510639--15510886	35	7.1	35	79	4	243	43	12	6	37	1.69
15510619--15510893	141	2.0	138	85	6	367	42	13	6	37	1.70
15513685--15513828	35	4.1	35	88	5	173	31	31	10	25	1.90
15520419--15520528	35	3.1	35	81	5	121	31	30	9	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15520452--15520528	37	2.1	38	87	2	111	31	31	6	31	1.83
15521664--15521738	11	7.2	11	67	21	54	2	32	0	65	1.07
15521685--15521738	20	2.7	20	94	0	90	1	33	0	64	1.04
15526546--15526595	19	2.6	19	75	12	57	14	38	6	42	1.70
15527367--15527414	14	3.4	14	91	5	71	50	4	4	41	1.41
15527349--15527405	2	28.5	2	84	7	71	50	5	1	42	1.35
15527450--15527611	42	3.9	41	85	1	207	22	23	32	21	1.98
15527450--15527617	84	2.0	84	88	2	248	21	23	32	22	1.98
15541175--15541321	54	2.7	54	88	0	195	19	15	39	25	1.91
15544085--15544229	68	2.1	68	83	5	186	29	10	26	33	1.89
15544086--15544206	34	3.6	34	92	1	190	28	12	24	33	1.92
15544361--15544392	6	5.3	6	92	0	55	81	0	15	3	0.82
15544384--15544446	25	2.5	25	86	0	90	49	11	22	17	1.78
15547355--15547427	36	2.0	36	97	0	137	32	28	21	16	1.95
15553176--15553294	43	2.8	43	77	2	114	21	31	18	27	1.97
15554561--15554665	40	2.6	39	86	5	138	23	19	34	22	1.96
15554638--15554797	54	3.0	52	82	2	167	22	14	37	25	1.92
15567071--15567193	43	2.9	43	79	4	133	24	15	37	22	1.93
15569592--15569685	42	2.2	42	86	3	127	22	28	23	25	1.99
15578460--15578612	28	5.3	28	79	13	132	39	12	9	39	1.75
15578447--15578609	59	2.8	60	79	8	158	42	12	8	36	1.73
15578447--15578609	29	5.6	29	75	11	127	42	12	8	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15582835--15582866	2	16.0	2	93	0	55	46	0	3	50	1.17
15582920--15583018	42	2.4	42	82	0	108	19	28	26	26	1.99
15591227--15591329	38	2.6	40	83	8	133	21	15	39	23	1.91
15602602--15602636	12	3.0	12	91	4	54	71	0	28	0	0.86
15603628--15603801	36	5.0	36	67	16	107	28	36	14	20	1.93
15603604--15603805	101	2.0	101	95	0	359	28	36	15	20	1.93
15606161--15606380	111	2.0	109	96	0	395	28	17	18	35	1.94
15606683--15606741	25	2.4	25	85	0	82	25	16	32	25	1.97
15609231--15609265	2	17.5	2	100	0	70	51	0	0	48	1.00
15609667--15609726	25	2.4	25	85	0	75	26	16	30	26	1.97
15612464--15612532	32	2.1	34	84	13	90	39	10	11	39	1.75
15612502--15612554	22	2.4	22	87	0	70	35	11	13	39	1.80
15612525--15612718	71	2.7	71	82	5	257	36	5	13	44	1.67
15612525--15612699	35	4.9	35	83	2	224	34	5	13	45	1.68
15614272--15614385	37	3.1	37	88	5	169	23	37	9	28	1.87
15619290--15619355	22	3.0	22	97	0	123	27	4	25	42	1.74
15629318--15629407	43	2.1	43	85	0	117	22	17	37	22	1.94
15636377--15636403	2	13.5	2	100	0	54	51	0	48	0	1.00
15637094--15637149	23	2.4	23	87	0	85	26	5	39	28	1.78
15645076--15645114	20	2.0	20	85	10	53	38	20	15	25	1.92
15650803--15650921	63	1.9	63	92	0	202	23	33	14	28	1.94
15652799--15652975	39	4.6	39	84	3	173	25	36	15	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15656969--15657065	36	2.7	36	88	1	142	25	38	15	20	1.92
15657178--15657207	2	15.0	2	100	0	60	50	0	0	50	1.00
15657612--15657647	18	2.0	18	94	0	63	58	33	0	8	1.28
15665307--15665331	12	2.1	12	100	0	50	64	0	0	36	0.94
15667304--15667354	22	2.3	22	86	6	68	33	13	5	47	1.67
15669800--15669857	24	2.5	23	74	20	66	62	0	36	1	1.06
15669802--15669857	20	2.8	20	86	0	85	64	0	33	1	1.04
15672009--15672049	20	2.0	20	95	0	73	41	0	14	43	1.45
15672018--15672067	25	2.0	25	84	7	66	44	0	20	36	1.52
15688354--15688391	2	19.0	2	100	0	76	50	0	0	50	1.00
15688420--15688502	42	2.0	42	92	0	139	24	18	33	24	1.96
15688428--15688526	42	2.4	42	84	3	119	24	19	33	23	1.97
15688567--15688596	2	15.0	2	100	0	60	50	0	0	50	1.00
15696115--15696269	43	3.6	43	88	1	204	21	33	18	27	1.96
15697409--15697447	20	2.0	20	95	5	71	25	20	15	38	1.92
15699794--15699833	20	2.0	20	95	4	73	37	15	25	22	1.93
15701550--15701593	10	4.3	10	85	5	52	63	4	6	25	1.38
15707487--15707527	15	2.8	16	78	14	52	51	19	4	24	1.66
15711438--15711495	20	2.8	20	75	12	55	44	8	20	25	1.80
15722607--15722650	20	2.2	20	84	12	54	54	9	2	34	1.44
15726298--15726329	16	2.1	16	94	5	57	65	0	0	34	0.93
15726454--15726482	14	2.0	15	93	6	51	13	6	0	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15729776--15729895	58	2.1	57	85	4	161	35	10	15	40	1.80
15731134--15731352	56	3.9	56	87	1	271	22	39	15	22	1.91
15731510--15731548	2	19.5	2	100	0	78	48	0	0	51	1.00
15732342--15732468	43	3.0	43	89	3	195	25	17	33	23	1.96
15732911--15732949	19	2.1	19	85	0	51	30	25	23	20	1.98
15736778--15736815	19	2.0	19	100	0	76	26	0	31	42	1.56
15739149--15739194	15	3.1	15	78	9	58	23	2	17	56	1.52
15751395--15751435	2	20.5	2	94	0	73	53	0	46	0	1.00
15752014--15752145	42	3.1	42	82	3	158	26	18	31	22	1.97
15752209--15752233	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103