genome.fa.s5.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  26  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9644407--9644544	67	2.1	67	83	5	172	26	12	25	35	1.91
9644335--9644530	99	2.0	100	82	6	245	25	13	25	36	1.92
9647469--9647606	68	2.0	67	92	1	231	36	15	15	31	1.89
9649878--9649915	19	2.0	19	94	0	67	28	0	28	42	1.56
9654146--9654302	73	2.2	73	89	0	233	42	17	17	21	1.89
9654122--9654377	73	3.5	73	80	6	218	39	17	20	21	1.92
9654793--9654889	32	2.9	33	71	10	90	28	15	25	29	1.96
9654758--9654931	67	2.6	67	78	10	201	26	14	25	33	1.94
9655327--9655434	35	3.1	35	93	0	171	27	9	32	30	1.88
9657542--9657600	25	2.4	25	100	0	118	49	10	11	28	1.72
9658992--9659027	2	18.0	2	88	0	54	44	0	2	52	1.15
9661070--9661125	21	2.7	21	94	0	94	33	19	23	23	1.97
9662615--9662647	10	3.3	10	91	0	57	27	42	6	24	1.78
9665566--9665624	26	2.3	26	79	5	66	1	28	3	66	1.18
9673362--9673420	26	2.3	26	79	5	66	1	28	3	66	1.18
9676457--9676559	38	2.6	40	92	3	165	23	20	36	19	1.95
9682040--9682161	43	2.8	43	82	4	156	23	16	36	22	1.94
9682158--9682213	26	2.2	26	93	0	94	25	5	37	32	1.78
9682166--9682213	23	2.0	24	88	12	71	22	6	39	31	1.79
9685798--9685860	23	2.7	23	83	9	92	12	33	7	46	1.71
9694601--9694652	17	3.1	17	91	0	86	25	30	11	32	1.91
9696903--9697012	43	2.5	43	88	2	157	26	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9698643--9698795	49	3.1	49	90	0	243	23	34	15	26	1.95
9702548--9702582	17	2.1	17	100	0	70	31	5	22	40	1.78
9710313--9710338	2	13.0	2	100	0	52	50	0	0	50	1.00
9710470--9710527	21	2.8	20	82	5	80	36	6	18	37	1.78
9712557--9712723	42	4.0	42	84	0	181	25	22	29	23	1.99
9715815--9715906	14	6.2	14	79	9	94	3	32	0	64	1.10
9715807--9715906	7	13.6	7	78	11	85	4	32	0	64	1.12
9715803--9715906	45	2.3	46	79	12	119	3	32	0	63	1.12
9722163--9722261	49	2.0	50	88	9	150	32	23	17	27	1.96
9722249--9722294	21	2.2	21	88	7	67	28	19	26	26	1.99
9724162--9724266	42	2.5	42	96	0	192	24	33	19	22	1.97
9730644--9730831	50	3.8	50	82	4	202	39	17	9	34	1.81
9730713--9730786	21	3.2	21	66	20	58	33	18	12	35	1.88
9732400--9732912	257	2.0	257	91	0	830	40	12	18	28	1.87
9735684--9735724	20	2.0	20	95	0	73	43	14	0	41	1.45
9744392--9744426	16	2.2	16	89	0	52	40	2	8	48	1.49
9745651--9745701	15	3.4	15	78	10	59	27	3	19	49	1.66
9747739--9747776	19	2.0	19	94	0	67	28	0	28	42	1.56
9751667--9751694	11	2.5	11	100	0	56	53	7	0	39	1.28
9758522--9758620	36	2.7	35	86	6	128	29	20	26	24	1.99
9759427--9759515	40	2.2	40	90	2	135	32	24	21	21	1.98
9759836--9759946	43	2.6	43	88	2	152	20	35	18	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9767090--9767220	42	3.1	42	82	2	156	25	16	32	24	1.96
9769058--9769206	43	3.4	44	84	8	171	23	34	15	26	1.94
9770322--9770360	12	3.3	11	83	16	51	20	20	0	58	1.39
9774307--9774404	43	2.3	43	94	0	169	19	33	20	26	1.96
9774307--9774434	43	3.0	43	87	4	161	21	32	19	27	1.97
9777579--9777753	42	4.1	41	91	3	260	25	17	32	25	1.97
9783702--9783768	22	3.0	22	100	0	134	35	26	13	23	1.92
9788526--9788560	13	2.5	14	90	9	54	25	0	22	51	1.48
9804262--9804286	11	2.3	11	100	0	50	48	12	0	40	1.40
9813348--9813376	2	14.5	2	100	0	58	0	0	51	48	1.00
9816580--9816618	20	1.9	21	89	5	62	15	28	12	43	1.83
9817426--9817472	2	23.5	2	100	0	94	48	0	0	51	1.00
9817513--9817625	42	2.7	42	85	1	154	20	32	23	23	1.98
9818422--9818475	23	2.4	22	84	3	72	44	5	35	14	1.69
9831772--9831832	32	1.9	32	89	0	95	27	21	22	27	1.99
9834487--9834530	21	2.1	21	82	0	52	34	20	13	31	1.92
9835231--9835393	80	2.0	80	89	0	245	19	11	33	35	1.87
9843991--9844119	36	3.6	36	80	5	120	18	20	29	31	1.96
9861223--9861302	35	2.3	35	88	0	115	25	7	25	42	1.80
9861317--9861397	34	2.4	34	79	4	83	25	8	32	33	1.86
9867004--9867029	13	2.0	13	100	0	52	46	7	0	46	1.31
9871916--9871946	15	2.0	16	93	6	55	58	19	0	22	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9874581--9874618	19	2.0	19	94	0	67	42	28	0	28	1.56
9882759--9882800	14	3.1	14	79	6	50	52	0	0	47	1.00
9898198--9898239	21	2.0	20	82	13	50	21	2	26	50	1.61
9910457--9910567	43	2.6	43	82	2	125	18	35	21	25	1.95
9912685--9912726	20	2.1	20	86	0	57	14	21	9	54	1.68
9924337--9924375	21	1.9	21	89	5	62	30	17	12	38	1.88
9924194--9924398	73	2.8	73	83	1	259	24	23	15	37	1.93
9925172--9925210	21	2.0	20	90	10	62	5	30	2	61	1.31
9946131--9946178	19	2.6	19	83	3	62	54	0	6	39	1.26
9948207--9948385	91	2.0	90	100	0	349	39	8	13	37	1.76
9950054--9950286	54	4.3	54	88	0	358	27	40	13	18	1.88
9950156--9950249	30	3.3	30	64	17	83	26	45	12	14	1.81
9960529--9960576	23	2.0	23	84	12	60	41	4	31	22	1.73
9960763--9960787	13	1.9	13	100	0	50	44	8	24	24	1.80
9960776--9960895	23	5.1	23	83	4	150	31	9	25	33	1.87
9960776--9960899	47	2.6	47	88	0	176	30	10	25	33	1.90
9961091--9961135	16	2.6	17	86	13	65	75	0	24	0	0.80
9961091--9961135	10	4.3	11	83	11	58	75	0	24	0	0.80
9963943--9964121	54	3.3	53	89	1	268	27	39	13	19	1.89
9964163--9964192	2	15.0	2	92	0	51	50	3	0	46	1.18
9967577--9967695	43	2.8	43	92	0	193	21	21	36	20	1.96
9978669--9978718	20	2.5	20	75	15	59	36	6	42	16	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9979734--9979916	71	2.6	70	87	3	249	40	21	14	23	1.90
9985661--9985781	57	2.1	57	87	1	181	39	16	13	30	1.87
9985720--9985798	40	2.0	39	82	7	97	41	16	11	30	1.83
9998158--9998211	23	2.3	23	100	0	108	14	7	38	38	1.75
9999506--9999605	34	3.0	34	75	8	100	31	28	13	28	1.93
10000786--10000826	21	2.0	21	90	0	64	39	21	7	31	1.81
10000855--10000920	29	2.3	29	94	0	114	36	19	7	36	1.81
10004399--10004437	2	19.5	2	100	0	78	0	48	0	51	1.00
10014072--10014235	35	4.7	35	79	8	181	29	16	17	35	1.92
10014060--10014236	70	2.5	70	86	3	250	28	17	16	36	1.92
10018655--10018679	13	1.9	13	100	0	50	28	8	8	56	1.57
10019783--10019816	17	2.0	17	88	11	52	35	8	5	50	1.58
10020766--10020840	21	3.6	19	73	16	69	56	0	2	41	1.13
10020750--10020887	42	3.4	41	79	12	133	48	1	2	47	1.25
10020804--10020917	27	4.2	27	77	15	101	50	0	2	45	1.21
10020861--10020928	27	2.5	27	86	9	68	52	1	0	45	1.09
10032865--10032946	28	3.0	28	85	1	112	30	19	17	32	1.95
10032866--10032957	27	3.4	27	83	1	112	32	17	16	33	1.92
10037303--10037336	16	2.1	17	94	5	61	73	0	0	26	0.83
10037301--10037342	9	4.7	9	82	11	50	73	0	0	26	0.83
10042376--10042429	25	2.2	25	87	12	76	38	1	7	51	1.41
10046847--10046899	20	2.7	20	96	0	97	30	22	15	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10060616--10060671	23	2.4	23	87	0	85	25	12	39	23	1.89
10060639--10060785	58	2.5	58	85	2	179	26	17	32	23	1.97
10060746--10060878	47	2.8	47	89	0	212	27	21	29	21	1.99
10060731--10060878	47	3.1	47	85	3	208	29	22	27	20	1.99
10060731--10060911	47	3.9	47	83	2	157	28	22	27	22	1.99
10061575--10061777	31	6.5	31	91	1	291	25	17	19	37	1.93
10065449--10065699	118	2.1	118	91	2	398	27	30	19	22	1.98
10065527--10065758	58	4.0	57	72	11	218	24	31	21	22	1.98
10065527--10065874	176	2.0	174	95	1	617	25	31	21	21	1.98
10065703--10066044	117	2.9	116	90	2	531	26	30	21	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103