genome.fa.s5.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  99  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36627927--36627972	23	2.0	23	91	0	74	39	10	13	36	1.79
36634107--36634403	163	1.8	160	98	1	567	21	11	8	58	1.58
36642455--36642504	25	2.1	23	85	7	64	58	8	4	30	1.45
36649121--36649237	18	6.5	18	86	5	130	23	29	17	29	1.97
36659178--36659381	90	2.2	92	87	5	288	41	11	5	41	1.64
36661022--36661056	14	2.5	14	90	0	52	57	2	0	40	1.14
36668175--36668218	18	2.4	18	96	0	79	31	6	29	31	1.84
36680165--36680207	19	2.3	20	76	15	56	55	0	2	41	1.12
36680171--36680204	18	1.9	17	88	5	50	47	0	2	50	1.16
36688698--36688803	54	2.0	54	86	3	151	37	20	10	31	1.86
36688777--36689036	79	3.3	79	73	12	230	46	13	10	29	1.77
36694675--36694750	38	2.0	38	94	0	134	46	11	19	22	1.82
36696759--36696789	2	15.5	2	100	0	62	51	0	48	0	1.00
36697919--36697948	12	2.4	13	94	5	53	86	3	10	0	0.67
36706471--36706520	21	2.4	22	80	10	59	60	10	18	12	1.59
36743407--36743700	101	2.9	102	76	2	324	22	18	13	45	1.84
36746581--36746643	33	1.9	33	93	0	108	66	7	14	11	1.43
36747114--36747228	35	3.3	35	85	2	133	46	19	15	18	1.84
36747114--36747284	70	2.4	70	79	4	166	45	19	15	18	1.85
36747484--36747547	29	2.2	29	75	5	67	20	17	9	53	1.71
36753092--36753385	26	12.1	26	80	9	286	23	13	25	37	1.91
36753076--36753404	52	6.8	50	76	13	269	24	13	25	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36753058--36753358	95	3.1	94	81	10	263	23	13	25	37	1.92
36753058--36753236	94	1.9	93	87	5	229	23	14	25	36	1.93
36753076--36753382	146	2.1	144	81	8	354	24	13	25	36	1.92
36753432--36753494	21	2.9	21	79	9	74	47	17	11	23	1.79
36773199--36773236	18	2.1	19	85	5	51	44	10	7	36	1.68
36773586--36773635	21	2.3	22	89	3	75	38	8	14	40	1.75
36789578--36789627	18	2.8	18	93	0	82	30	20	6	44	1.75
36792098--36792131	17	2.0	17	94	0	59	38	14	5	41	1.70
36792998--36793027	15	1.9	16	93	6	53	63	6	0	30	1.20
36793150--36793204	24	2.3	24	84	6	67	72	0	5	21	1.04
36803262--36803309	24	2.1	23	88	7	71	0	20	8	70	1.12
36810930--36811008	31	2.6	32	80	11	94	48	2	18	30	1.62
36811283--36811492	108	1.9	108	88	1	314	36	13	4	46	1.63
36812246--36812319	30	2.4	30	80	13	71	24	17	5	52	1.65
36833440--36833472	15	2.2	15	94	0	57	9	6	24	60	1.49
36833913--36833943	15	2.1	15	93	0	53	0	16	0	83	0.64
36845776--36845805	11	2.7	11	100	0	60	56	10	0	33	1.32
36847261--36847290	13	2.4	12	94	5	51	63	0	0	36	0.95
36853850--36853892	18	2.3	18	84	4	59	46	2	9	41	1.48
36854087--36854141	27	2.0	28	85	3	76	60	1	3	34	1.25
36855520--36855576	19	2.8	20	76	12	64	47	0	3	49	1.18
36873934--36874063	66	2.0	66	85	0	179	34	24	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36875575--36875670	47	2.0	47	100	0	192	17	18	32	31	1.95
36880679--36880719	19	2.1	20	90	4	66	60	0	4	34	1.18
36883164--36883207	18	2.3	20	84	7	56	65	2	9	22	1.32
36890692--36890719	12	2.3	12	100	0	56	39	17	28	14	1.89
36892501--36892546	23	2.0	23	86	4	65	47	2	0	50	1.13
36893505--36893561	28	2.0	28	100	0	114	24	26	14	35	1.93
36896085--36896403	133	2.4	133	88	1	469	13	45	16	25	1.83
36896911--36897006	39	2.4	40	87	1	131	27	1	12	59	1.40
36899835--36899875	2	20.5	2	94	0	73	53	0	0	46	1.00
36906669--36906701	16	2.0	17	88	5	50	69	21	9	0	1.15
36907398--36907698	75	3.9	75	72	17	265	31	8	9	50	1.64
36907554--36907698	74	2.0	72	86	9	206	31	6	10	51	1.63
36907310--36907687	164	2.3	162	86	4	514	32	9	8	49	1.66
36907802--36907846	23	2.0	23	86	0	63	64	6	6	22	1.41
36908915--36908961	23	2.0	23	95	0	85	63	10	8	17	1.49
36909789--36909817	2	14.5	2	100	0	58	51	0	48	0	1.00
36925416--36925544	65	2.0	65	98	0	249	31	27	12	28	1.93
36941914--36941963	2	25.5	2	95	4	93	50	0	0	50	1.00
36944134--36944171	2	19.0	2	94	0	67	50	2	0	47	1.15
36944435--36944464	2	15.0	2	100	0	60	50	0	0	50	1.00
36944502--36944538	18	2.1	17	90	5	56	40	8	8	43	1.64
36946178--36946221	18	2.4	18	78	14	54	75	6	9	9	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36947549--36947583	2	17.5	2	93	0	61	0	51	0	48	1.00
36969555--36969686	41	3.2	41	88	3	185	46	12	9	31	1.74
36980576--36980626	22	2.3	22	83	6	68	45	0	1	52	1.12
36980576--36980638	18	3.5	18	73	14	58	46	0	1	52	1.10
36980872--36980947	29	2.6	30	91	4	136	60	9	2	27	1.41
36980932--36980985	28	1.9	28	84	0	72	66	1	0	31	1.02
36997997--36998078	40	2.0	40	100	0	164	21	14	19	43	1.87
37000438--37000505	16	4.0	17	77	9	68	45	0	1	52	1.09
37001388--37001544	78	2.0	80	91	2	255	50	15	6	26	1.68
37004703--37004736	3	11.3	3	93	0	59	32	32	32	2	1.73
37011825--37011900	38	2.0	38	94	0	134	31	10	18	39	1.85
37013076--37013120	23	1.9	24	86	4	65	44	2	0	53	1.13
37023420--37023536	37	3.0	37	78	16	128	20	13	25	40	1.89
37023445--37023533	43	2.1	43	89	4	135	17	12	26	42	1.85
37024369--37024399	12	2.6	12	94	0	53	25	48	6	19	1.72
37029209--37029234	2	13.0	2	100	0	52	50	0	50	0	1.00
37029290--37029317	2	14.0	2	100	0	56	50	0	50	0	1.00
37035555--37035579	2	12.5	2	100	0	50	0	48	0	52	1.00
37055603--37055697	50	1.9	50	91	0	154	13	21	17	47	1.82
37067076--37067107	6	4.9	7	85	14	50	68	0	0	31	0.90
37067065--37067112	15	3.3	15	80	16	57	66	0	2	31	1.03
37082860--37082885	4	6.5	4	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37087894--37087920	2	13.5	2	100	0	54	0	48	0	51	1.00
37092845--37092882	19	2.1	18	90	5	58	78	2	18	0	0.86
37101892--37101918	6	4.5	6	100	0	54	37	18	44	0	1.50
37106660--37106753	45	2.1	45	90	4	145	46	18	12	22	1.82
37128468--37128515	16	2.9	16	79	14	53	25	2	2	70	1.09
37128465--37128522	19	2.9	19	74	23	57	27	1	1	68	1.08
37130222--37130269	22	2.3	20	78	7	51	52	0	4	43	1.20
37130585--37130631	24	2.0	23	83	4	58	44	2	8	44	1.46
37131193--37131227	18	1.9	18	88	11	54	11	5	17	65	1.43
37133334--37133409	37	2.1	37	97	0	143	19	15	25	39	1.91
37133903--37133968	33	2.0	33	96	0	123	37	3	37	21	1.69
37137490--37138182	345	2.0	344	93	0	1190	35	11	14	38	1.83
37138216--37138260	21	2.2	20	84	4	54	66	4	11	17	1.38
37145742--37145775	2	17.0	2	87	0	50	2	2	47	47	1.32
37157189--37157235	2	23.5	2	95	0	76	44	0	4	51	1.21
37161415--37161459	14	3.1	15	78	15	51	40	0	2	57	1.11
37161499--37161530	15	2.1	15	94	0	55	53	0	0	46	1.00
37162341--37162400	25	2.4	25	100	0	120	50	0	10	40	1.36
37162341--37162425	13	6.7	13	68	12	61	45	1	12	40	1.50
37162500--37162583	30	3.0	27	71	20	73	58	0	4	36	1.19
37165127--37165297	91	1.9	91	90	2	272	39	19	14	26	1.90
37179804--37179877	2	37.0	2	86	5	105	50	0	2	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37181073--37181112	18	2.4	16	80	12	53	75	2	15	7	1.14
37195364--37195388	2	12.5	2	100	0	50	48	0	0	52	1.00
37196090--37196129	2	20.0	2	100	0	80	50	0	0	50	1.00
37196973--37197011	20	2.0	20	90	10	62	58	0	41	0	0.98
37203588--37203638	20	2.5	21	81	9	70	49	0	0	50	1.00
37212224--37212252	2	14.5	2	100	0	58	51	0	48	0	1.00
37233183--37233216	17	1.9	18	88	5	52	50	0	0	50	1.00
37234295--37234350	27	2.1	27	89	0	85	32	16	14	37	1.88
37237678--37237899	113	2.0	111	86	5	313	34	5	14	45	1.68
37238832--37238916	41	2.1	41	88	0	125	47	3	17	31	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103