genome.fa.s5.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  36  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13539776--13539813	16	2.3	17	86	4	51	26	13	0	60	1.33
13541580--13541615	19	1.9	18	94	5	63	75	0	2	22	0.94
13552759--13552933	42	4.1	42	88	3	253	24	17	33	25	1.97
13575203--13575236	14	2.5	13	90	9	50	11	0	8	79	0.94
13582411--13582500	29	3.2	29	68	23	93	16	10	42	31	1.81
13582409--13582520	54	2.1	54	98	0	215	18	10	41	28	1.84
13584258--13584386	32	3.8	33	75	18	124	33	27	13	26	1.93
13584237--13584406	67	2.5	66	91	3	279	33	27	14	24	1.94
13584239--13584409	35	5.1	33	72	12	152	34	26	14	23	1.94
13585542--13585619	37	2.1	37	92	0	129	46	21	8	23	1.79
13598884--13598938	11	5.2	11	72	14	53	0	32	0	67	0.91
13598884--13598938	20	2.6	21	88	5	76	0	32	0	67	0.91
13600291--13600334	20	2.2	21	92	8	74	20	25	15	38	1.92
13601119--13601232	43	2.7	43	85	0	165	25	21	35	18	1.96
13601119--13601245	43	3.0	43	80	2	148	25	19	36	18	1.95
13601231--13601270	20	2.0	20	85	9	55	25	5	40	30	1.77
13603755--13603794	19	2.1	20	81	13	57	50	0	2	47	1.14
13604196--13604233	20	1.9	20	100	0	76	28	5	21	44	1.73
13607952--13607976	11	2.3	11	100	0	50	72	0	0	28	0.86
13608071--13608109	19	2.1	19	90	0	60	53	0	7	38	1.30
13610446--13610476	2	15.5	2	100	0	62	51	0	0	48	1.00
13617048--13617147	19	5.2	19	64	9	58	20	15	42	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13620571--13620595	13	1.9	13	100	0	50	44	0	8	48	1.32
13664588--13664642	2	27.5	2	100	0	110	50	0	0	49	1.00
13669774--13669830	26	2.2	26	100	0	114	31	40	3	24	1.72
13669844--13669992	43	3.5	42	82	7	165	23	32	17	26	1.96
13675837--13675882	20	2.3	21	81	11	60	13	23	6	56	1.60
13681107--13681152	19	2.4	20	82	10	60	54	0	2	43	1.12
13681560--13681597	19	2.0	19	100	0	76	26	0	31	42	1.56
13682802--13682982	54	3.2	54	63	19	125	41	5	16	35	1.72
13682800--13683031	116	2.0	115	98	0	446	42	5	16	35	1.71
13685999--13686044	2	23.5	2	82	4	58	50	0	0	50	1.00
13686347--13686383	2	18.5	2	100	0	74	48	0	0	51	1.00
13687276--13687323	24	2.0	23	88	4	69	43	22	12	20	1.86
13688540--13688580	20	2.0	20	90	0	64	41	14	2	41	1.59
13693096--13693315	53	4.3	52	77	11	197	35	19	15	30	1.92
13695816--13695853	19	2.0	19	100	0	76	0	21	10	68	1.19
13695971--13696026	8	6.6	8	78	17	60	46	3	1	48	1.30
13695969--13696026	9	6.7	9	76	7	57	46	3	1	48	1.29
13695972--13696007	17	2.2	16	90	5	54	47	2	0	50	1.15
13695971--13696027	26	2.2	26	93	3	98	45	3	1	49	1.29
13706255--13706328	20	3.7	20	78	7	62	25	0	10	63	1.27
13707442--13707480	20	2.0	18	85	14	51	30	0	12	56	1.37
13707431--13707492	18	3.5	18	73	14	58	35	0	9	54	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13709480--13709572	2	47.5	2	90	4	136	45	0	2	51	1.13
13712895--13713014	43	2.8	42	77	7	116	25	20	34	20	1.97
13715864--13716013	60	2.5	61	90	1	230	35	22	19	22	1.96
13716280--13716313	8	4.2	8	88	0	50	47	11	0	41	1.40
13716323--13716445	43	2.9	43	83	2	158	21	36	17	24	1.95
13718471--13718636	38	4.3	38	80	6	172	30	18	20	30	1.96
13718471--13718635	78	2.1	78	85	2	215	30	17	20	30	1.96
13725045--13725090	21	2.2	20	84	7	56	15	21	6	56	1.61
13725050--13725090	21	1.9	22	90	5	66	17	24	7	51	1.70
13730917--13731688	258	3.0	256	88	3	1153	34	13	17	34	1.89
13732844--13732871	12	2.3	12	100	0	56	0	57	0	42	0.99
13739741--13739809	28	2.5	28	83	6	86	50	5	18	24	1.69
13739772--13739856	28	3.0	28	82	3	100	47	8	22	22	1.77
13740140--13740242	28	3.7	28	97	0	188	45	5	21	27	1.74
13740140--13740261	28	4.4	28	89	6	167	45	6	22	26	1.76
13740140--13740261	56	2.2	56	89	2	192	45	6	22	26	1.76
13739655--13740444	405	2.0	405	84	4	1047	38	8	23	29	1.84
13740765--13740794	14	2.1	14	93	0	51	16	0	50	33	1.46
13746065--13746247	39	4.8	39	75	6	121	21	14	39	24	1.90
13748033--13748123	29	3.1	29	87	0	128	35	5	26	32	1.80
13752067--13752160	29	3.3	28	85	5	118	42	7	11	38	1.70
13752070--13752200	59	2.3	57	85	2	163	39	7	10	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13752077--13752200	29	4.3	28	79	7	113	40	8	10	41	1.69
13754553--13754655	38	2.6	40	83	3	129	21	14	41	22	1.89
13761028--13761125	38	2.5	40	83	4	121	26	14	35	23	1.93
13762368--13762662	149	2.0	146	97	2	563	43	3	10	42	1.56
13763170--13763209	3	13.3	3	94	0	62	27	0	5	67	1.11
13779542--13779592	5	10.2	5	86	0	66	39	17	1	41	1.61
13784655--13784919	133	2.0	132	92	2	435	34	10	19	35	1.86
13785152--13785289	59	2.4	57	80	8	154	39	5	13	41	1.69
13785154--13785300	29	5.1	28	79	12	147	40	5	12	42	1.65
13786470--13786507	19	2.0	19	94	0	67	28	0	28	42	1.56
13795119--13795157	2	19.5	2	100	0	78	51	0	0	48	1.00
13795305--13795417	49	2.3	49	89	3	174	21	36	16	25	1.94
13795458--13795496	2	19.0	2	85	15	53	46	5	0	48	1.24
13796487--13796537	27	1.9	27	84	4	68	23	15	7	52	1.68
13799215--13799435	35	6.3	35	76	6	216	43	13	6	35	1.71
13814403--13814431	12	2.4	12	100	0	58	44	13	10	31	1.78
13814972--13815001	2	15.0	2	100	0	60	50	0	0	50	1.00
13826959--13827028	35	2.0	35	100	0	140	22	25	11	40	1.88
13829508--13829736	54	4.3	54	96	0	415	29	12	22	35	1.91
13831811--13831944	35	3.8	35	78	0	124	21	16	16	45	1.85
13838106--13838168	32	2.0	31	96	0	108	42	12	3	39	1.59
13839452--13839499	12	4.1	11	77	15	51	22	2	2	72	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13839536--13839917	207	1.8	208	80	7	454	44	10	12	32	1.76
13840854--13840918	34	1.9	34	84	3	87	43	1	3	52	1.26
13861818--13861842	13	1.9	13	100	0	50	48	8	0	44	1.32
13862835--13862869	18	1.9	18	94	0	61	20	2	0	77	0.90
13863183--13863220	19	2.0	19	94	0	67	42	28	0	28	1.56
13882273--13882513	62	3.9	62	80	3	254	34	17	23	24	1.96
13882273--13882496	123	1.8	124	83	8	305	35	17	23	24	1.95
13882487--13882537	26	2.0	26	92	0	84	31	21	13	33	1.92
13882438--13882600	88	1.9	88	86	2	238	31	17	23	28	1.97
13882513--13882684	62	2.8	62	84	0	191	34	16	22	26	1.95
13884318--13884442	38	3.4	38	87	3	175	28	9	34	27	1.88
13887747--13887864	38	3.1	38	87	0	155	25	32	10	32	1.89
13893218--13893274	29	2.0	29	92	0	96	49	19	10	21	1.78
13894610--13895452	423	2.0	420	99	0	1659	40	11	20	27	1.88
13897722--13897758	19	1.9	19	94	0	65	29	0	27	43	1.55
13897804--13897857	27	2.0	27	82	17	67	27	25	24	22	2.00
13901482--13901729	35	7.1	35	78	4	225	45	11	6	37	1.66
13901481--13901729	71	3.6	70	82	4	290	44	11	6	37	1.65
13901469--13901736	142	1.9	137	85	3	365	44	11	5	38	1.64
13903209--13903457	37	6.9	37	83	4	312	29	31	8	30	1.87
13903209--13903460	72	3.5	72	91	0	387	29	31	8	30	1.87
13904882--13904919	19	2.0	19	94	0	67	28	0	28	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13904963--13905022	28	2.1	28	87	6	86	31	15	21	31	1.94
13919801--13919838	20	2.0	20	89	5	60	31	5	39	23	1.77
13926239--13926268	2	15.0	2	92	0	51	46	0	3	50	1.18
13926838--13927030	35	5.4	35	80	9	219	30	33	8	27	1.86
13926838--13927020	37	5.0	37	81	9	216	31	31	8	28	1.86
13926838--13927020	72	2.5	72	90	1	269	31	31	8	28	1.86
13927579--13927649	15	4.7	15	72	19	58	0	26	0	73	0.84
13927579--13927645	4	17.5	4	71	20	54	0	26	0	73	0.84
13927579--13927618	21	1.9	21	89	0	62	0	25	0	75	0.81
13927582--13927646	20	3.3	20	81	10	73	0	27	0	72	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103