genome.fa.s5.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  88  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32482682--32482715	2	17.0	2	100	0	68	50	0	0	50	1.00
32484146--32484364	114	1.9	115	83	0	287	36	16	17	28	1.92
32484251--32484420	70	2.4	69	78	1	169	37	16	18	28	1.92
32484362--32484448	45	1.9	45	88	0	129	33	14	20	31	1.93
32484362--32484458	45	2.2	45	84	0	122	31	16	20	30	1.95
32484527--32484594	29	2.2	30	89	7	102	39	11	13	35	1.81
32484544--32484607	29	2.2	29	88	0	92	46	10	9	32	1.71
32499099--32499124	11	2.4	11	100	0	52	26	0	0	73	0.84
32499805--32499908	53	2.0	53	96	0	190	13	27	11	47	1.77
32507804--32507936	67	2.0	67	96	0	248	24	13	20	41	1.88
32509336--32509373	18	2.1	18	90	0	58	0	42	2	55	1.14
32523521--32523557	19	1.9	19	94	0	65	29	18	21	29	1.97
32527836--32527884	24	2.0	24	100	0	98	8	20	12	59	1.58
32533930--32533964	2	17.5	2	87	0	52	48	0	0	51	1.00
32541296--32541438	70	2.0	70	100	0	286	48	19	9	22	1.78
32544139--32544172	18	1.9	18	88	5	52	55	8	2	32	1.45
32550368--32550394	2	13.5	2	100	0	54	51	0	48	0	1.00
32550654--32550678	13	1.9	13	100	0	50	8	0	92	0	0.40
32560318--32560409	22	4.0	22	71	13	60	54	8	0	36	1.32
32562849--32562915	32	2.1	32	88	2	98	41	4	5	47	1.48
32562928--32562982	14	3.9	14	75	15	60	60	1	0	38	1.08
32565850--32565902	25	2.1	25	100	0	106	30	3	18	47	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32566443--32566495	15	3.7	15	82	9	58	58	1	0	39	1.09
32566443--32566485	15	2.8	15	89	3	59	53	2	0	44	1.13
32575952--32576062	56	2.0	56	100	0	222	39	12	19	27	1.88
32577918--32577973	25	2.2	26	81	9	62	73	3	5	17	1.17
32577954--32577983	7	4.1	7	91	8	51	70	0	13	16	1.18
32577918--32577973	26	2.2	26	83	3	69	73	3	5	17	1.17
32583219--32583244	13	2.0	13	100	0	52	0	15	0	84	0.62
32593940--32594009	35	2.0	34	91	2	113	28	8	17	44	1.78
32594346--32594426	41	2.0	41	85	0	108	45	17	1	35	1.56
32594612--32594660	2	25.0	2	88	12	75	48	0	2	48	1.12
32594612--32594654	19	2.3	19	91	0	77	51	0	0	48	1.00
32594617--32594660	21	2.1	21	95	0	79	47	0	2	50	1.13
32594612--32594660	17	2.8	18	87	12	75	48	0	2	48	1.12
32614695--32614726	15	2.1	15	94	0	55	68	0	0	31	0.90
32614683--32614731	20	2.4	21	75	3	55	61	0	2	36	1.08
32614712--32614845	33	4.1	32	72	18	114	65	1	3	29	1.18
32614771--32614848	40	2.0	40	85	10	106	65	2	2	29	1.19
32615323--32615379	21	2.8	20	81	7	69	36	19	17	26	1.94
32621639--32621709	35	2.0	35	100	0	142	30	11	8	49	1.68
32621985--32622010	2	13.0	2	100	0	52	50	0	0	50	1.00
32637884--32637938	2	27.0	2	82	10	58	43	3	47	3	1.38
32640103--32640129	3	9.0	3	100	0	54	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32648411--32648440	15	2.0	15	93	0	51	36	0	0	63	0.95
32651528--32651552	2	12.5	2	100	0	50	48	0	0	52	1.00
32655597--32655751	78	2.0	77	93	1	265	43	8	10	36	1.70
32659570--32659699	10	13.6	10	81	9	137	42	0	6	50	1.35
32659570--32659699	6	21.7	6	87	0	161	42	0	6	50	1.35
32659570--32659699	28	4.8	28	92	3	196	42	0	6	50	1.35
32664027--32664074	2	24.0	2	100	0	96	50	0	0	50	1.00
32667891--32667926	2	18.0	2	100	0	72	50	0	0	50	1.00
32668042--32668079	2	19.0	2	100	0	76	50	0	0	50	1.00
32683410--32684136	362	2.0	362	85	3	980	29	25	10	33	1.90
32687941--32687973	16	2.1	16	100	0	66	30	12	6	51	1.63
32688784--32688809	7	3.7	7	100	0	52	30	0	46	23	1.53
32689106--32689140	13	2.7	13	86	0	52	74	0	5	20	1.02
32689644--32689696	20	2.6	21	88	8	67	45	5	1	47	1.37
32689657--32689696	20	2.1	19	95	4	71	50	5	0	45	1.23
32693690--32693753	2	32.5	2	84	9	78	50	0	0	48	1.01
32693691--32693764	37	2.0	36	94	2	130	51	0	0	47	1.00
32698620--32698695	38	2.0	39	82	7	93	47	1	9	42	1.44
32708567--32708592	2	13.0	2	100	0	52	50	0	0	50	1.00
32713880--32713920	15	2.9	14	80	20	50	14	7	4	73	1.22
32719562--32719602	2	21.0	2	95	5	75	0	48	0	51	1.00
32725718--32725765	21	2.2	23	88	7	73	10	25	4	60	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32726338--32726363	2	13.0	2	100	0	52	50	0	0	50	1.00
32730264--32730296	17	1.9	17	100	0	66	42	21	30	6	1.77
32734704--32734735	3	10.7	3	93	0	55	31	3	0	65	1.08
32735661--32735704	17	2.6	17	78	7	54	70	4	4	20	1.23
32738532--32738560	9	3.0	10	90	10	51	41	10	0	48	1.37
32742790--32742818	2	14.5	2	100	0	58	48	0	0	51	1.00
32757862--32757904	21	2.0	21	82	8	52	48	4	2	44	1.36
32759075--32759100	2	13.0	2	100	0	52	50	0	0	50	1.00
32759087--32759191	51	2.0	53	92	3	178	24	20	9	45	1.80
32761181--32761248	18	3.9	17	81	11	75	70	0	29	0	0.87
32761190--32761248	12	5.0	12	75	20	54	69	0	30	0	0.89
32761180--32761246	30	2.4	29	85	11	95	70	0	29	0	0.88
32761143--32761317	81	2.2	79	82	10	196	64	2	32	0	1.13
32761261--32761321	10	5.7	11	83	16	76	81	0	18	0	0.68
32761266--32761315	15	3.1	17	77	16	61	84	0	16	0	0.63
32765448--32765481	10	3.5	10	96	4	61	85	0	0	14	0.60
32766793--32766832	20	2.0	21	90	5	64	77	0	2	20	0.88
32770983--32771032	25	2.1	25	85	7	68	74	4	10	12	1.21
32771503--32771560	17	3.7	16	77	13	50	68	0	3	27	1.05
32772578--32772613	18	1.9	19	88	5	56	66	2	0	30	1.06
32772729--32772782	4	12.5	4	81	18	56	77	0	0	22	0.76
32772729--32772782	9	6.2	9	89	8	85	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32772728--32772782	5	11.4	5	79	14	62	78	0	0	21	0.76
32773905--32773974	9	7.4	9	74	15	61	42	2	1	52	1.24
32773920--32773977	30	1.9	30	89	0	89	41	5	1	51	1.34
32773905--32773947	18	2.4	18	92	0	68	41	4	0	53	1.21
32774607--32774661	22	2.4	23	90	3	85	36	25	10	27	1.89
32774613--32774661	23	2.2	22	92	3	80	32	26	12	28	1.92
32774679--32774763	22	3.9	22	82	4	100	43	22	10	23	1.84
32774658--32774763	44	2.4	45	83	7	121	44	21	9	24	1.82
32775877--32775924	24	2.0	24	91	0	78	31	14	12	41	1.83
32776194--32776272	41	2.0	40	89	2	122	22	24	7	45	1.78
32778113--32778152	21	2.0	21	85	14	57	45	0	0	55	0.99
32778156--32778220	31	2.1	31	91	0	103	53	3	1	41	1.25
32778160--32778203	23	2.0	22	86	4	61	54	4	2	38	1.33
32778155--32778214	8	7.6	8	83	3	77	56	3	1	38	1.26
32778254--32778303	8	6.2	8	82	17	68	12	0	0	88	0.53
32778254--32778303	16	3.2	16	97	2	93	12	0	0	88	0.53
32778254--32778296	7	5.7	7	86	13	59	11	0	0	88	0.52
32781136--32781183	26	2.0	25	88	12	73	50	0	2	47	1.12
32781135--32781191	26	2.3	24	79	8	69	45	1	1	50	1.22
32781970--32782099	25	5.2	24	75	7	82	40	11	15	33	1.83
32781989--32782159	26	6.7	26	82	6	154	40	12	14	32	1.83
32781968--32782295	26	12.5	26	73	11	143	39	9	15	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32782181--32782271	28	3.3	27	75	18	98	41	4	15	38	1.67
32782515--32782563	24	2.1	22	81	7	53	12	18	2	67	1.32
32782482--32782805	176	1.9	174	83	5	435	27	19	7	45	1.77
32783103--32783139	12	3.1	12	92	7	58	37	0	16	45	1.47
32784466--32784508	10	4.1	11	83	16	56	25	2	0	72	0.97
32785609--32785699	20	5.0	19	71	22	70	29	0	1	69	0.96
32785605--32785699	28	3.3	28	69	21	72	28	0	1	70	0.94
32785907--32786027	62	2.0	62	96	0	224	33	23	13	29	1.92
32786280--32786596	59	5.3	59	89	4	476	34	20	12	32	1.91
32798428--32798470	17	2.5	17	88	7	61	23	0	0	76	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103