genome.fa.s5.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  72  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27042555--27042615	8	7.5	8	76	10	61	3	1	13	81	0.88
27042616--27042799	38	4.9	38	84	5	221	42	21	15	20	1.88
27042616--27043846	76	16.1	75	73	13	533	40	18	14	25	1.89
27042833--27042948	36	3.1	36	83	7	117	46	20	12	20	1.82
27042833--27043833	38	25.7	38	78	10	843	41	18	15	24	1.89
27043025--27043832	37	20.9	37	78	11	700	40	18	15	25	1.90
27043112--27043832	275	2.7	269	87	4	1097	40	19	16	24	1.91
27052001--27052042	14	3.1	13	86	10	57	21	0	0	78	0.75
27052004--27052064	16	3.6	16	79	20	70	19	3	0	77	0.91
27052000--27052068	24	3.0	24	81	8	72	20	2	0	76	0.91
27052006--27052068	11	5.6	11	73	19	51	20	3	0	76	0.93
27055397--27055434	19	2.0	19	94	0	67	28	0	28	42	1.56
27059272--27059324	15	3.6	14	85	12	70	28	0	16	54	1.43
27063976--27064010	16	2.1	17	89	5	54	31	2	0	65	1.07
27067770--27067840	36	2.0	35	83	2	88	36	15	23	23	1.94
27069422--27069461	21	1.9	21	89	0	62	22	22	27	27	1.99
27069717--27069893	37	4.8	37	86	5	252	20	36	11	30	1.89
27069712--27069890	72	2.5	72	86	5	243	20	36	12	30	1.89
27070700--27070748	19	2.6	19	75	12	55	44	8	34	12	1.71
27071297--27071364	34	2.0	34	82	0	82	29	27	13	29	1.94
27072054--27072118	15	4.1	15	72	16	51	29	4	3	63	1.30
27072070--27072151	34	2.4	34	86	8	105	29	3	1	65	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27072155--27072228	31	2.4	31	84	6	89	31	6	0	62	1.21
27072220--27072260	20	2.0	20	85	0	55	29	0	0	70	0.87
27072221--27072262	15	2.9	15	85	3	59	28	0	0	71	0.86
27072593--27072637	21	2.2	21	88	4	65	53	4	17	24	1.62
27073354--27073410	27	2.2	25	84	9	71	54	1	0	43	1.10
27073517--27073644	7	19.3	7	69	24	50	57	1	0	39	1.13
27073361--27073634	131	2.1	133	83	10	346	55	2	1	40	1.24
27073489--27073708	89	2.6	85	79	13	202	58	1	0	39	1.12
27073504--27073739	106	2.2	112	87	8	337	56	1	1	40	1.17
27073330--27073843	237	2.1	241	85	9	672	55	2	1	40	1.23
27079208--27079264	2	28.5	2	100	0	114	49	0	0	50	1.00
27083948--27083990	2	21.5	2	100	0	86	48	0	51	0	1.00
27105701--27107148	722	2.0	722	93	0	2488	29	18	17	35	1.93
27124169--27124231	22	2.9	22	97	0	117	42	23	3	30	1.70
27127113--27127146	2	17.0	2	100	0	68	50	0	0	50	1.00
27127382--27127421	20	2.0	20	100	0	80	50	25	5	20	1.68
27132427--27132479	28	1.9	27	88	3	79	30	20	15	33	1.93
27132894--27133445	252	2.2	252	77	4	567	36	11	5	46	1.63
27133767--27135568	252	7.3	249	78	9	1514	47	5	11	35	1.63
27134502--27135191	237	2.9	234	82	7	710	47	6	11	34	1.65
27134249--27135628	489	2.8	486	78	9	1251	47	5	12	34	1.65
27133817--27135628	743	2.4	741	77	7	1758	47	5	11	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27141147--27141184	2	19.0	2	94	0	67	0	52	0	47	1.00
27151749--27151844	46	2.1	45	92	1	156	31	16	22	29	1.96
27152837--27153099	45	5.8	44	88	1	364	33	21	19	25	1.97
27152851--27153095	135	1.8	135	90	1	402	34	21	19	24	1.97
27153025--27153168	69	2.1	69	92	2	236	36	20	18	24	1.95
27153070--27153118	24	2.0	24	88	0	71	44	20	16	18	1.86
27153094--27153190	45	2.2	45	86	0	131	31	19	19	28	1.96
27152980--27153190	114	1.9	114	88	0	323	34	20	18	26	1.96
27153275--27153351	29	2.8	28	82	4	75	40	14	7	37	1.75
27153305--27153376	27	2.6	28	80	8	85	36	11	9	43	1.73
27159293--27159472	66	2.8	66	81	1	193	30	28	11	30	1.91
27164068--27164190	65	1.9	66	86	5	178	29	25	9	35	1.88
27190713--27190859	74	2.0	74	94	0	258	34	21	8	36	1.83
27205890--27205919	15	2.0	15	93	0	51	50	0	0	50	1.00
27206156--27206187	12	2.6	13	90	9	50	25	0	9	65	1.22
27206999--27207030	15	2.1	15	100	0	64	18	12	28	40	1.87
27211970--27211998	1	29.0	1	100	0	58	100	0	0	0	0.00
27212271--27212304	2	17.0	2	93	0	59	47	0	2	50	1.16
27229263--27229301	21	1.9	21	89	5	62	41	5	5	48	1.47
27240758--27240815	2	29.0	2	92	0	98	53	0	0	46	1.00
27241558--27241591	7	4.9	7	100	0	68	0	11	0	88	0.52
27243846--27243886	21	1.9	22	85	5	57	41	4	7	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27245109--27245370	131	2.0	131	94	0	463	38	9	13	37	1.78
27247849--27247932	39	2.2	39	84	4	107	47	10	7	34	1.66
27249823--27249904	40	2.0	40	85	4	110	42	18	4	34	1.71
27252658--27252707	19	2.3	23	77	22	72	38	24	0	38	1.56
27252662--27252698	19	1.9	19	100	0	74	48	21	0	29	1.50
27253277--27253315	18	2.1	19	90	4	62	46	5	0	48	1.24
27253401--27253438	15	2.5	15	91	0	58	47	0	0	52	1.00
27257300--27257339	19	2.2	18	86	4	53	42	0	5	52	1.23
27258193--27258319	63	2.0	63	98	0	245	40	10	9	39	1.72
27259087--27259121	14	2.4	15	90	4	54	40	0	0	60	0.97
27262732--27262760	2	15.0	2	92	7	51	51	0	0	48	1.00
27263064--27263160	33	2.9	34	76	13	112	30	1	0	68	0.97
27263081--27263157	7	9.2	9	68	23	53	29	0	0	70	0.88
27263089--27263166	22	3.8	21	73	19	67	28	0	0	71	0.86
27263068--27263133	27	2.4	27	78	9	89	30	1	0	68	0.99
27263065--27263160	17	5.9	16	70	23	58	30	1	0	68	0.96
27263068--27263155	26	3.2	27	69	15	65	29	1	0	69	0.96
27263081--27263156	22	3.0	27	69	25	67	30	0	0	69	0.88
27263387--27263411	13	1.9	13	100	0	50	40	8	0	52	1.31
27264607--27264632	2	13.0	2	100	0	52	0	50	0	50	1.00
27274171--27274270	29	3.4	29	82	6	114	36	0	2	61	1.08
27274174--27274273	30	3.4	29	85	8	123	35	0	2	62	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27299402--27299441	10	3.5	11	86	13	55	72	17	0	10	1.11
27300254--27300300	2	23.0	2	95	4	85	48	0	2	48	1.13
27308374--27308400	13	2.1	13	100	0	54	22	14	7	55	1.64
27312480--27312509	14	2.1	15	93	6	53	46	0	6	46	1.29
27319070--27319117	24	2.0	24	100	0	96	25	12	16	45	1.82
27320349--27320373	13	1.9	13	100	0	50	60	8	0	32	1.26
27322327--27322351	2	12.5	2	100	0	50	52	0	48	0	1.00
27326905--27327096	94	2.0	95	90	1	305	26	13	21	39	1.89
27330156--27330231	28	2.6	29	83	6	100	61	2	0	35	1.10
27332464--27332786	161	2.0	161	94	0	565	40	14	17	26	1.89
27333655--27333730	32	2.4	32	93	0	125	50	9	14	26	1.73
27339686--27339932	125	2.0	125	98	0	476	33	21	10	34	1.88
27343959--27344033	27	3.0	25	77	19	75	48	0	1	50	1.09
27343977--27344034	29	2.0	29	83	12	75	51	0	1	46	1.11
27344339--27344387	21	2.3	21	85	0	62	0	30	36	32	1.58
27344398--27344450	23	2.3	23	83	6	63	54	0	41	3	1.18
27345754--27345835	42	2.0	42	83	6	107	39	17	13	30	1.88
27345836--27345865	9	3.3	9	90	0	51	43	20	10	26	1.83
27350472--27350557	28	3.1	28	84	0	118	25	8	15	51	1.70
27351504--27351573	33	2.1	33	91	0	113	44	21	10	24	1.82
27354612--27354650	14	2.7	15	88	4	53	15	2	5	76	1.06
27358777--27358811	16	2.1	17	94	5	63	80	0	20	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27359135--27359161	3	9.0	3	100	0	54	33	0	33	33	1.58
27360269--27360297	3	9.7	3	100	0	58	31	0	0	68	0.89
27366393--27366449	22	2.6	22	88	2	89	28	14	26	31	1.94
27377723--27377766	20	2.2	20	87	0	61	31	11	15	40	1.83
27377732--27377778	20	2.3	20	77	0	58	34	14	17	34	1.90
27378314--27378495	68	2.7	68	80	1	177	35	15	10	37	1.82
27379431--27379469	21	1.9	20	84	5	51	38	10	12	38	1.78
27390282--27390312	3	10.7	3	93	6	55	67	0	0	32	0.91
27391199--27391248	25	2.0	25	100	0	100	48	4	12	36	1.59
27392015--27392283	88	3.1	87	80	7	309	48	10	36	4	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103