genome.fa.s5.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  38  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14301999--14302057	28	2.1	28	83	3	73	6	16	0	76	1.00
14302311--14302352	21	2.0	20	86	4	57	38	0	0	61	0.96
14302706--14302743	19	2.1	18	90	5	58	44	5	0	50	1.24
14310900--14311041	28	4.9	28	84	6	176	38	9	14	37	1.80
14310900--14311055	59	2.7	58	85	5	197	38	8	13	39	1.76
14311217--14311249	17	1.9	17	88	11	50	39	3	15	42	1.62
14313124--14313161	20	1.9	20	88	0	58	31	7	21	39	1.82
14315105--14315214	40	2.6	42	83	9	120	23	32	13	30	1.93
14319686--14319727	21	2.0	22	90	4	68	47	4	28	19	1.69
14319681--14319731	21	2.5	20	81	15	59	49	3	29	17	1.65
14322510--14322541	15	2.2	14	94	5	55	0	25	0	75	0.81
14332176--14332289	59	1.9	59	92	0	192	35	15	26	21	1.94
14346388--14346428	19	2.1	19	86	9	55	63	7	0	29	1.21
14351749--14351912	67	2.4	67	83	4	170	26	12	24	35	1.92
14351801--14351919	35	3.5	35	71	6	109	29	12	25	32	1.92
14353127--14353383	68	3.8	68	77	5	245	34	18	10	35	1.86
14354801--14354912	37	3.0	37	82	0	125	27	10	34	26	1.90
14356628--14356669	17	2.5	17	100	0	84	38	21	7	33	1.81
14360631--14360661	11	2.8	11	95	0	53	61	0	0	38	0.96
14364175--14364333	49	3.2	49	92	0	264	21	34	18	25	1.96
14366236--14366295	25	2.4	25	85	0	84	25	11	33	30	1.91
14377865--14378623	383	2.0	383	94	0	1331	25	23	6	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14379664--14379828	54	3.1	54	87	0	249	26	40	14	18	1.90
14384450--14384570	42	2.9	42	87	0	161	26	31	20	21	1.98
14385420--14385467	23	2.1	23	84	7	62	35	31	0	33	1.58
14385908--14385944	18	2.1	18	89	0	56	0	35	0	64	0.94
14390249--14390411	54	3.0	54	93	0	272	25	39	14	20	1.90
14390304--14390389	25	3.3	25	64	12	64	23	43	12	20	1.86
14395772--14395817	20	2.3	20	85	7	58	30	17	21	30	1.96
14406340--14406455	42	2.7	42	81	6	135	18	35	21	25	1.95
14410741--14411143	202	2.0	201	99	0	788	29	28	13	28	1.94
14412120--14412159	20	2.0	21	90	5	64	22	2	2	72	1.09
14415912--14415955	2	22.0	2	100	0	88	50	0	0	50	1.00
14417014--14417162	76	2.0	76	85	5	203	24	33	16	25	1.95
14429827--14429966	37	3.9	37	86	3	169	30	33	8	27	1.87
14429879--14429981	37	2.8	36	86	5	102	31	35	5	27	1.80
14431129--14431179	20	2.5	20	90	0	84	0	35	0	64	0.94
14431333--14431388	28	2.0	28	100	0	112	35	10	32	21	1.88
14432956--14432998	22	2.0	20	86	8	59	27	25	11	34	1.91
14435956--14436041	31	2.8	31	80	0	100	48	9	39	2	1.48
14436758--14437047	61	4.8	61	83	2	368	27	17	31	23	1.97
14437152--14437194	19	2.3	19	84	4	61	53	0	2	44	1.13
14448821--14448862	20	2.1	20	86	8	59	73	0	2	23	0.94
14448820--14448870	12	4.3	12	80	14	54	72	0	3	23	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14449249--14449298	11	4.2	13	78	21	56	74	0	26	0	0.83
14449251--14449302	16	3.5	16	73	26	60	71	0	28	0	0.87
14469076--14469167	26	3.4	27	87	4	123	52	14	22	10	1.72
14498740--14498838	19	5.1	19	66	9	74	19	17	41	22	1.90
14498736--14498838	38	2.6	40	87	6	149	18	16	41	23	1.89
14507325--14507575	134	1.9	134	84	5	337	38	11	16	34	1.84
14509308--14509418	43	2.6	43	82	0	141	26	18	36	18	1.95
14509308--14509431	43	2.9	43	76	2	133	25	17	37	18	1.93
14524808--14524860	21	2.5	21	84	0	79	30	15	11	43	1.81
14524911--14524949	20	2.0	20	90	10	62	41	20	12	25	1.88
14526792--14526844	20	2.7	19	80	11	54	16	3	5	73	1.17
14529260--14529305	19	2.4	19	85	0	56	60	0	0	39	0.97
14529864--14529904	8	5.1	8	82	11	57	68	0	31	0	0.90
14529864--14529901	4	9.5	4	83	11	51	68	0	31	0	0.90
14532047--14532202	59	2.7	59	79	13	146	28	21	21	28	1.99
14532243--14532285	21	2.0	21	86	0	59	27	27	13	30	1.95
14532557--14532616	23	2.6	23	89	0	84	33	38	1	26	1.67
14532559--14532621	3	21.7	3	74	18	53	34	36	1	26	1.67
14534745--14534798	20	2.8	19	80	8	56	57	12	0	29	1.36
14535638--14535669	16	2.0	16	93	0	55	40	0	15	43	1.47
14538957--14539009	20	2.7	19	80	8	54	58	11	0	30	1.33
14539442--14539618	39	4.6	39	85	3	191	25	10	35	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14539448--14539616	78	2.2	75	85	5	214	25	11	35	27	1.90
14565130--14565370	61	4.0	61	83	4	283	23	33	17	26	1.96
14565961--14566024	12	5.2	12	78	10	58	1	28	3	67	1.15
14565992--14566028	6	6.0	6	90	3	56	0	21	0	78	0.75
14565974--14566156	69	2.5	72	78	8	201	2	29	4	63	1.28
14566236--14566278	13	3.3	13	86	0	59	0	20	0	79	0.74
14566230--14566276	22	2.1	22	88	7	69	0	17	0	82	0.66
14566234--14566287	16	3.3	15	85	12	63	0	22	0	77	0.76
14566230--14566278	26	1.9	25	87	4	71	0	18	0	81	0.69
14566232--14566279	13	3.7	13	78	10	53	0	20	0	79	0.74
14568836--14568879	21	2.1	21	95	0	79	36	18	13	31	1.90
14571984--14572218	61	3.9	61	82	5	246	25	29	17	27	1.98
14572851--14572916	26	2.6	25	77	15	73	0	30	0	69	0.88
14572840--14572906	32	2.0	35	91	8	113	0	34	0	65	0.93
14572861--14572918	23	2.6	23	88	2	91	0	32	0	67	0.91
14572807--14572982	92	1.9	90	85	4	237	1	32	3	61	1.22
14572885--14573053	66	2.6	65	74	15	159	2	29	4	63	1.27
14572940--14573094	63	2.5	60	79	14	163	2	29	2	65	1.19
14573072--14573097	6	4.3	6	100	0	52	0	15	0	84	0.62
14573064--14573101	13	2.9	13	88	11	60	0	18	0	81	0.69
14572944--14573118	69	2.7	63	82	12	196	2	30	2	64	1.18
14572949--14573169	69	3.2	69	79	12	172	3	33	3	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14572885--14573156	132	2.1	131	78	10	281	3	31	4	60	1.33
14573186--14573218	15	2.2	15	94	0	57	0	18	0	81	0.68
14578336--14578436	38	2.6	40	87	3	143	23	17	37	20	1.94
14579378--14579415	19	2.0	19	100	0	76	26	0	31	42	1.56
14593781--14593841	25	2.5	24	78	7	68	31	34	11	22	1.90
14594925--14595026	38	2.7	36	84	6	123	23	18	36	21	1.95
14595265--14595297	17	2.0	16	94	5	57	6	15	24	54	1.63
14598408--14598467	31	2.0	31	83	3	77	33	13	6	46	1.69
14604721--14609878	170	30.3	169	77	5	4157	37	13	14	34	1.86
14604721--14609878	341	15.1	340	78	5	4069	37	13	14	34	1.86
14604721--14609878	511	10.1	512	78	5	4322	37	13	14	34	1.86
14609939--14610627	171	4.0	171	75	4	588	38	14	13	33	1.85
14611849--14611970	43	2.8	43	83	0	145	26	16	36	21	1.94
14622194--14622228	2	17.5	2	100	0	70	48	0	0	51	1.00
14628511--14628570	30	2.0	30	100	0	120	26	20	23	30	1.98
14628774--14628829	22	2.5	22	82	0	76	26	23	21	28	1.99
14629149--14629280	38	3.5	38	95	0	237	28	38	9	23	1.86
14631903--14631961	26	2.3	26	79	5	66	66	3	28	1	1.18
14637838--14637884	21	2.4	19	77	16	51	27	17	25	29	1.97
14638077--14638136	23	2.6	23	89	0	84	33	38	1	26	1.67
14638133--14638264	43	3.1	44	78	8	121	21	35	17	25	1.95
14641761--14641942	78	2.4	76	82	4	206	21	14	36	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14641824--14641978	39	4.0	39	90	3	215	25	12	35	27	1.91
14649063--14649168	38	2.7	39	86	2	142	20	17	39	21	1.92
14653157--14653188	16	2.0	16	93	0	55	12	21	0	65	1.25
14654430--14654598	39	4.3	39	84	4	180	25	14	34	26	1.94
14669461--14669499	20	2.0	19	85	5	51	12	20	5	61	1.50
14669861--14669898	20	1.9	20	100	0	76	44	21	5	28	1.73
14674166--14674342	77	2.3	76	83	9	241	39	8	14	37	1.77
14674881--14674921	19	2.2	19	95	0	73	19	24	14	41	1.89
14675714--14675882	70	2.4	70	92	1	284	20	11	42	26	1.85
14675854--14675961	38	2.8	39	81	4	146	22	15	39	22	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103