genome.fa.s5.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  102  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38488084--38488142	23	2.5	24	78	13	61	49	1	3	45	1.28
38497508--38497549	18	2.3	18	83	4	57	0	21	2	76	0.90
38502009--38502033	3	8.3	3	100	0	50	32	36	32	0	1.58
38506075--38506139	33	2.0	33	93	0	112	15	24	13	46	1.82
38506157--38506203	24	2.0	24	91	0	76	23	38	10	27	1.88
38507506--38507554	11	4.4	10	80	19	53	59	0	6	34	1.22
38510538--38510576	2	19.5	2	100	0	78	51	0	0	48	1.00
38510848--38510888	22	1.9	21	85	5	55	58	0	2	39	1.11
38513021--38513117	46	2.0	48	88	9	144	11	24	11	52	1.70
38527657--38527842	93	2.0	94	91	1	302	38	15	16	29	1.90
38530647--38530790	50	2.9	50	73	8	130	29	29	13	27	1.95
38533990--38534042	18	3.1	18	78	8	65	41	1	0	56	1.10
38534295--38534336	20	2.1	20	86	8	59	52	2	7	38	1.42
38534702--38534752	2	25.5	2	77	15	52	47	3	1	47	1.32
38546453--38546514	24	2.7	23	80	11	72	54	0	4	40	1.22
38553786--38553826	21	2.0	21	90	9	66	31	2	0	65	1.05
38558250--38558302	26	2.0	26	100	0	106	33	32	15	18	1.92
38590366--38590394	13	2.2	13	100	0	58	6	17	13	62	1.52
38608087--38608145	25	2.4	25	97	0	109	38	35	0	25	1.56
38608101--38608146	14	3.5	13	75	19	51	43	32	0	23	1.54
38615286--38615361	36	2.1	36	100	0	152	34	32	13	19	1.90
38616777--38616890	58	2.0	56	98	1	210	53	3	10	31	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38617508--38617594	31	2.8	32	79	15	110	24	11	8	56	1.61
38628819--38628879	32	1.9	32	86	6	88	60	1	9	27	1.38
38629064--38629130	14	4.9	14	76	10	66	50	0	0	49	1.00
38635612--38635672	15	4.3	15	72	16	58	50	1	0	47	1.10
38635651--38635698	25	1.9	25	91	0	78	45	4	0	50	1.21
38635611--38635697	40	2.1	41	81	6	106	48	2	0	49	1.13
38635678--38635711	15	2.2	16	89	5	52	38	2	0	58	1.13
38635728--38635772	23	2.0	22	86	4	63	60	2	2	35	1.22
38635776--38635850	24	2.9	24	79	16	71	45	2	1	50	1.24
38635863--38635905	10	4.2	10	79	5	50	9	13	0	76	1.01
38636313--38636358	21	2.2	20	85	11	58	19	26	28	26	1.99
38646816--38646840	2	12.5	2	100	0	50	48	0	0	52	1.00
38648466--38648525	30	2.0	30	96	0	111	3	38	10	48	1.53
38648473--38648537	30	2.2	30	85	0	85	6	38	7	47	1.57
38648500--38648589	45	2.0	45	88	0	135	10	35	6	47	1.63
38652276--38652329	25	2.1	26	86	3	74	38	3	3	53	1.36
38656677--38656745	32	2.1	33	82	12	81	30	2	0	66	1.06
38661490--38661518	13	2.1	14	93	6	51	62	6	10	20	1.50
38669129--38669162	12	2.8	12	100	0	68	8	41	23	26	1.83
38669259--38669361	42	2.5	39	76	14	109	21	31	27	20	1.98
38678427--38678453	2	13.5	2	100	0	54	48	0	51	0	1.00
38688313--38688386	22	3.4	22	75	1	69	5	37	4	52	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38697070--38697097	2	14.0	2	100	0	56	50	0	0	50	1.00
38707922--38708038	61	1.9	61	91	0	189	35	3	13	47	1.60
38708001--38708041	22	2.0	21	86	13	59	31	0	7	60	1.24
38707998--38708062	19	3.5	19	72	16	55	36	0	7	55	1.29
38710955--38711018	31	2.1	31	100	0	128	34	21	18	25	1.96
38712398--38712643	123	2.0	123	98	0	474	21	26	9	42	1.83
38716210--38716260	24	2.2	24	85	3	68	39	1	1	56	1.22
38716219--38716266	24	2.1	23	84	7	62	45	0	2	52	1.12
38717958--38717999	21	2.0	21	85	0	57	47	14	7	30	1.71
38720852--38720892	20	2.0	20	100	0	82	29	0	0	70	0.87
38721045--38721108	24	2.7	24	87	0	101	45	17	15	21	1.85
38721167--38721238	27	2.6	28	78	8	76	37	12	8	41	1.73
38735565--38735651	2	44.5	2	80	8	90	49	2	2	44	1.27
38735617--38735651	11	3.5	10	88	11	54	48	2	0	48	1.16
38739254--38739294	2	20.5	2	100	0	82	0	51	0	48	1.00
38745615--38745648	18	2.0	18	88	11	54	67	11	5	14	1.39
38747267--38747301	18	1.9	18	88	0	52	54	5	2	37	1.39
38747729--38747771	13	3.0	14	80	16	52	37	0	2	60	1.10
38749055--38749096	22	1.9	22	90	0	66	19	21	30	28	1.97
38750459--38750878	209	2.0	206	82	5	506	33	12	20	33	1.90
38760915--38760940	2	13.0	2	100	0	52	0	50	0	50	1.00
38765354--38765740	210	1.8	210	90	3	618	27	16	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38766423--38766487	28	2.3	28	91	0	103	60	1	0	38	1.07
38789498--38789540	18	2.2	20	88	8	63	69	16	2	11	1.28
38821598--38821643	2	23.0	2	100	0	92	50	0	0	50	1.00
38825485--38825514	3	10.0	3	100	0	60	33	0	0	66	0.92
38829038--38829080	17	2.7	15	80	13	50	23	11	0	65	1.25
38829024--38829633	190	3.2	186	83	8	723	32	10	12	44	1.77
38834821--38834896	30	2.5	30	85	6	91	57	1	5	35	1.29
38837059--38837122	2	32.5	2	89	9	96	53	0	0	45	1.00
38856728--38856868	40	3.5	40	86	1	185	60	16	0	22	1.35
38856762--38856822	18	3.2	18	70	17	59	59	16	0	24	1.37
38856769--38856863	14	7.0	14	66	14	56	58	17	0	23	1.38
38856993--38857030	15	2.5	15	84	16	51	42	0	5	52	1.24
38858035--38858059	2	12.5	2	100	0	50	52	0	0	48	1.00
38861273--38861298	2	13.0	2	100	0	52	50	0	0	50	1.00
38862253--38862277	2	12.5	2	100	0	50	0	52	0	48	1.00
38865950--38865974	11	2.3	11	100	0	50	92	0	8	0	0.40
38867281--38867317	6	6.2	6	96	0	65	51	35	13	0	1.41
38867478--38867515	2	19.5	2	89	5	60	52	0	47	0	1.00
38870571--38870710	2	69.0	2	80	9	133	43	2	3	50	1.31
38879137--38879170	1	34.0	1	93	0	59	0	97	2	0	0.19
38882036--38882257	116	1.9	116	85	1	302	41	13	24	20	1.89
38888626--38888673	23	2.1	23	96	0	87	25	14	4	56	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38896960--38897021	2	31.0	2	93	6	108	48	0	0	50	1.01
38897410--38897434	2	12.5	2	100	0	50	48	0	0	52	1.00
38902874--38902919	5	9.2	5	82	0	56	2	30	2	65	1.16
38902874--38902919	20	2.3	20	88	0	65	2	30	2	65	1.16
38909253--38909292	17	2.3	17	87	12	55	17	10	0	72	1.11
38912097--38912123	2	13.5	2	100	0	54	48	0	0	51	1.00
38924498--38924568	34	2.1	34	97	0	133	33	19	8	38	1.82
38930810--38930852	12	3.5	12	81	15	52	4	58	0	37	1.19
38934382--38934410	14	2.1	14	93	6	51	62	0	0	37	0.96
38942853--38942906	25	2.2	25	100	0	108	64	22	5	7	1.40
38955896--38955960	15	4.4	15	77	12	55	27	3	0	69	1.03
38967992--38968068	38	2.0	38	100	0	154	32	12	25	28	1.93
38970024--38970062	2	19.5	2	100	0	78	51	0	48	0	1.00
38989815--38989840	2	13.0	2	100	0	52	50	0	50	0	1.00
38989871--38989898	2	14.0	2	100	0	56	50	0	50	0	1.00
38992623--38992653	7	4.4	7	95	0	53	0	38	0	61	0.96
38994186--38994229	19	2.4	19	84	3	54	31	6	13	47	1.69
39007039--39007072	18	1.9	18	88	5	52	44	17	8	29	1.79
39015678--39015723	20	2.2	21	80	3	58	43	0	0	56	0.99
39015896--39016103	100	2.0	107	85	8	279	40	3	12	41	1.62
39016576--39016642	20	3.1	21	75	20	59	44	0	2	52	1.16
39018776--39019336	281	2.0	282	93	1	973	41	19	16	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39021524--39021567	23	1.9	23	86	9	63	54	0	6	38	1.27
39034822--39034862	3	14.0	3	89	5	57	4	34	0	60	1.18
39040994--39041021	2	14.0	2	100	0	56	50	0	50	0	1.00
39046064--39046099	2	18.0	2	100	0	72	50	0	50	0	1.00
39060991--39061022	12	2.7	12	90	0	55	50	12	28	9	1.71
39079650--39079746	30	3.3	29	85	4	131	34	1	4	60	1.22
39079979--39080024	23	2.0	24	83	12	60	63	2	4	30	1.26
39095683--39095714	3	10.7	3	93	0	55	71	0	28	0	0.86
39106980--39107019	2	20.0	2	100	0	80	0	50	0	50	1.00
39129564--39129648	42	2.0	42	97	0	161	32	21	21	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103