genome.fa.s5.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  15  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5718598--5718888	49	5.9	49	78	5	239	33	19	16	30	1.94
5718598--5718887	97	2.9	98	80	2	260	33	19	16	30	1.94
5719125--5719169	19	2.4	19	85	7	56	60	0	2	37	1.09
5719732--5719759	2	14.0	2	100	0	56	50	0	0	50	1.00
5719820--5719896	31	2.7	29	82	13	88	66	9	22	2	1.33
5720357--5720408	5	10.6	5	85	6	63	76	1	19	1	0.97
5720394--5720474	27	3.1	26	85	3	92	48	16	24	11	1.78
5720430--5720514	25	3.4	25	85	8	111	49	9	23	17	1.76
5722500--5722652	50	3.1	49	78	7	157	35	19	15	28	1.93
5723848--5723907	20	3.0	20	80	0	75	33	10	18	38	1.84
5724046--5724121	21	3.6	21	80	3	80	51	10	7	30	1.65
5724061--5724119	22	2.8	21	82	5	64	52	11	8	27	1.66
5728499--5728557	31	1.9	31	85	0	82	40	20	11	27	1.87
5729019--5729058	20	2.0	20	95	0	71	30	12	17	40	1.86
5729198--5729256	21	2.8	22	82	10	61	50	11	5	32	1.61
5729224--5729291	21	3.3	21	81	6	68	50	13	5	30	1.65
5729346--5729413	21	3.2	21	78	0	73	42	14	5	36	1.70
5735294--5735337	3	14.7	3	100	0	88	34	0	0	65	0.93
5738395--5738419	2	12.5	2	100	0	50	52	0	48	0	1.00
5743989--5744030	10	4.3	10	78	6	50	47	0	0	52	1.00
5743994--5744036	19	2.3	18	80	11	50	46	0	0	53	1.00
5745224--5745266	18	2.3	19	84	4	61	46	6	0	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5746127--5746183	28	2.1	28	86	3	80	38	3	0	57	1.16
5748030--5748081	26	2.0	26	100	0	104	30	7	26	34	1.85
5748226--5748276	19	2.5	20	84	6	59	41	31	15	11	1.83
5751461--5751497	19	1.9	19	94	0	65	27	0	27	45	1.54
5751543--5751595	27	1.9	27	82	17	65	26	24	26	22	2.00
5752738--5752762	13	1.9	13	100	0	50	44	0	8	48	1.32
5762205--5762229	13	1.9	13	100	0	50	48	8	0	44	1.32
5763610--5763647	19	2.0	19	94	0	67	42	28	0	28	1.56
5768404--5768475	35	2.1	35	91	0	117	47	9	13	29	1.75
5769129--5769176	24	2.0	24	88	12	71	77	2	20	0	0.88
5769128--5769176	26	2.0	25	84	8	64	77	2	20	0	0.87
5770059--5770124	34	1.9	34	90	0	105	24	9	33	33	1.87
5770088--5770283	53	3.7	53	84	5	261	26	7	21	44	1.78
5770003--5770177	87	2.0	85	85	4	235	25	7	25	41	1.81
5770247--5770317	34	2.1	34	91	0	115	22	9	29	38	1.86
5770194--5770370	87	2.0	87	90	0	273	27	9	22	41	1.83
5769997--5770473	193	2.5	190	85	3	634	27	7	22	42	1.80
5770281--5770573	50	5.7	50	82	2	268	27	8	20	42	1.82
5770138--5770403	140	1.9	140	91	0	433	27	7	21	43	1.80
5772749--5772775	2	13.5	2	100	0	54	51	0	0	48	1.00
5787740--5787774	15	2.4	14	86	9	52	28	2	11	57	1.48
5788066--5788109	21	2.1	21	100	0	88	34	25	22	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5793970--5794015	17	2.8	18	75	24	57	45	4	0	50	1.21
5799289--5799494	40	4.9	40	83	10	225	24	12	26	36	1.90
5799243--5799494	128	2.0	128	88	1	371	24	12	25	37	1.90
5799331--5799518	88	2.1	88	88	1	270	23	12	25	38	1.89
5800878--5801537	118	5.8	111	90	3	921	16	11	27	44	1.82
5801198--5801577	118	3.2	118	93	0	609	17	11	27	43	1.83
5804051--5804195	78	1.9	78	86	2	211	40	17	23	18	1.92
5807591--5807839	92	2.9	86	81	7	306	30	23	14	30	1.95
5807674--5807868	92	2.1	92	87	4	286	31	23	15	29	1.95
5807675--5807894	92	2.4	92	84	4	248	31	23	14	30	1.94
5808094--5808159	26	2.8	23	77	18	64	56	4	13	25	1.57
5808103--5808152	26	1.9	26	91	0	82	56	4	14	26	1.56
5809755--5809902	45	3.2	45	79	5	170	20	32	18	28	1.96
5809786--5809926	24	6.0	24	81	8	182	21	30	18	29	1.97
5809755--5809926	93	1.8	93	91	0	281	20	31	18	28	1.97
5811995--5812067	23	3.2	23	88	0	101	39	28	15	16	1.89
5814104--5814140	15	2.5	14	87	12	56	43	0	2	54	1.14
5814155--5814202	19	2.4	20	82	6	62	52	2	6	39	1.39
5819437--5819504	24	2.9	24	76	10	68	47	7	14	30	1.72
5819444--5819506	24	2.7	24	82	2	74	47	7	15	28	1.74
5823229--5823332	2	52.0	2	88	0	154	46	1	3	48	1.31
5832412--5833236	254	3.3	250	81	5	906	49	4	10	34	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5834904--5834935	12	2.5	13	90	10	57	21	0	6	71	1.07
5836962--5837111	43	3.3	44	81	8	176	64	8	12	15	1.50
5836953--5837100	48	3.1	49	80	13	184	64	8	12	14	1.49
5837386--5837433	20	2.2	23	85	10	66	70	2	0	27	0.98
5838001--5838094	23	4.1	23	84	2	100	25	13	24	36	1.93
5838120--5838172	22	2.4	22	90	0	79	41	28	13	16	1.86
5838120--5838186	22	3.1	21	75	14	64	40	25	14	19	1.90
5839636--5839684	23	2.1	24	88	3	73	20	26	8	44	1.79
5841390--5841434	18	2.4	19	85	3	65	62	6	28	2	1.33
5847216--5847275	27	2.3	27	97	2	113	36	3	21	38	1.70
5850010--5850185	70	2.5	70	82	3	187	39	9	10	40	1.72
5850138--5850215	18	4.4	18	71	7	52	41	2	7	48	1.45
5850030--5850198	35	4.8	35	82	2	185	39	8	10	41	1.70
5850174--5850215	17	2.4	18	92	4	68	47	0	2	50	1.14
5853551--5853655	54	1.9	54	96	1	185	45	8	34	10	1.69
5853772--5853840	30	2.3	31	76	16	74	66	0	31	1	1.00
5854058--5854108	24	2.1	24	89	7	77	74	0	23	1	0.92
5858324--5858408	40	2.2	39	95	2	152	36	14	21	28	1.92
5859588--5859837	35	7.2	35	78	3	227	39	6	10	43	1.65
5859581--5859848	142	1.9	138	85	6	369	39	6	10	42	1.65
5859588--5859838	71	3.6	70	76	7	237	39	6	10	43	1.65
5860408--5860456	13	3.8	13	97	2	91	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5867991--5868035	14	3.2	14	90	0	72	11	86	0	0	0.53
5868988--5869041	2	27.5	2	84	3	74	0	44	1	53	1.11
5873698--5873730	3	11.3	3	93	6	59	36	0	0	63	0.95
5878794--5878832	2	19.5	2	100	0	78	51	0	48	0	1.00
5885216--5885258	22	1.9	23	90	4	70	74	2	4	18	1.10
5885206--5885259	23	2.3	23	81	6	65	72	1	5	20	1.14
5885643--5885722	34	2.4	34	93	0	133	20	11	36	32	1.88
5886870--5886949	15	5.4	14	72	13	54	72	0	5	22	1.04
5886915--5886971	11	5.4	10	76	19	62	70	0	1	28	0.98
5886898--5886968	22	3.3	21	81	15	74	71	0	2	25	0.99
5886865--5886978	32	3.9	28	71	18	83	72	0	3	23	1.00
5898747--5898771	13	1.9	13	100	0	50	48	8	0	44	1.32
5899913--5899965	28	1.9	27	88	3	79	28	22	18	30	1.98
5900010--5900055	20	2.3	20	88	7	67	45	17	4	32	1.68
5902323--5902691	38	9.8	38	81	2	379	24	13	19	42	1.87
5902323--5902782	75	6.0	76	80	6	419	26	13	18	41	1.88
5902334--5902692	113	3.2	113	87	1	472	24	13	19	42	1.87
5902621--5902791	85	2.0	82	91	3	270	36	15	12	35	1.85
5902783--5902849	1	67.0	1	72	0	53	86	11	0	1	0.64
5902783--5902850	15	4.7	15	76	20	81	85	13	0	1	0.67
5902784--5902847	10	6.9	9	80	7	67	85	12	0	1	0.66
5902981--5903038	22	2.7	22	82	15	77	77	3	3	15	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5903404--5903483	34	2.4	34	93	0	133	21	10	36	32	1.86
5903492--5903730	113	2.1	113	85	3	329	26	17	41	13	1.87
5904626--5904728	7	13.9	7	71	15	73	75	0	1	22	0.90
5904626--5904731	15	6.5	16	73	15	92	75	0	1	22	0.90
5904626--5904706	24	3.4	24	80	13	96	76	0	2	20	0.90
5904642--5904731	40	2.1	43	84	15	118	74	0	2	23	0.93
5904630--5904717	24	3.5	26	81	7	53	73	0	2	23	0.94
5904642--5904717	26	3.0	26	79	9	52	73	0	2	23	0.95
5906066--5906108	2	21.5	2	100	0	86	48	0	0	51	1.00
5907252--5907297	19	2.4	19	89	7	67	56	0	2	41	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103