genome.fa.s5.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  42  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15753730--15753858	43	3.0	41	85	7	159	25	17	34	23	1.96
15761108--15761235	42	3.0	42	87	4	177	25	17	33	24	1.96
15765729--15765844	49	2.3	49	85	1	151	25	19	31	22	1.98
15770877--15771038	49	3.3	49	82	4	191	24	18	33	24	1.97
15772155--15772192	19	2.0	19	94	0	67	28	0	28	42	1.56
15778843--15778875	17	1.9	17	88	11	50	42	15	3	39	1.62
15779039--15779103	28	2.3	29	86	5	89	40	9	9	41	1.69
15788503--15788537	5	7.0	5	93	0	61	37	20	0	42	1.52
15791171--15791228	28	2.1	28	84	9	75	24	22	22	31	1.99
15791724--15791769	19	2.4	19	85	7	58	39	2	2	56	1.24
15795706--15795745	14	2.8	14	88	3	53	72	0	25	2	0.97
15795718--15795767	21	2.4	21	77	9	57	66	0	30	4	1.10
15798548--15798577	15	1.9	16	93	6	53	36	20	13	30	1.90
15806642--15806689	18	2.6	19	86	3	62	56	2	2	39	1.23
15807597--15807641	14	3.1	14	84	6	63	68	0	31	0	0.89
15808222--15808262	19	2.2	19	86	0	55	29	7	26	36	1.83
15809395--15809584	72	2.6	73	81	9	219	37	16	19	26	1.93
15812293--15812402	43	2.6	43	80	7	134	26	20	34	18	1.96
15812296--15812417	43	2.8	43	80	4	131	26	18	35	19	1.95
15818748--15818799	25	2.1	25	96	0	95	38	19	11	30	1.87
15820327--15820408	43	1.9	43	90	5	130	24	18	37	19	1.94
15820328--15820436	43	2.5	43	83	5	123	24	17	37	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15820781--15820964	60	3.1	60	78	3	201	25	17	20	36	1.94
15831583--15833172	802	2.0	802	97	0	3027	30	16	21	32	1.95
15833589--15833634	19	2.4	20	82	10	60	54	0	2	43	1.12
15834033--15834070	20	1.9	20	100	0	76	28	5	21	44	1.73
15834122--15834175	28	2.0	27	85	10	74	35	18	18	27	1.94
15835299--15835329	16	1.9	16	93	0	53	45	0	0	54	0.99
15840511--15840547	17	2.2	17	95	0	65	32	24	35	8	1.85
15847006--15847100	38	2.4	38	80	3	100	21	36	18	23	1.95
15859504--15859566	20	3.2	20	90	2	101	30	41	3	25	1.71
15859565--15859683	43	2.8	43	89	2	168	19	37	21	21	1.94
15871492--15871609	43	2.7	43	81	0	146	22	18	37	21	1.94
15871659--15871690	2	16.0	2	93	0	55	50	3	0	46	1.17
15874658--15874687	10	2.9	10	95	5	51	0	26	10	63	1.26
15874659--15874693	11	3.3	11	92	4	54	0	22	14	62	1.31
15881436--15881465	10	2.8	11	90	10	53	0	23	6	70	1.11
15892432--15892465	16	2.1	16	88	0	50	44	14	14	26	1.84
15892687--15892746	25	2.4	24	83	8	75	30	16	28	25	1.97
15896566--15896607	4	11.5	4	80	19	56	26	0	0	73	0.83
15896570--15896599	10	2.8	11	90	10	53	26	0	0	73	0.84
15896567--15896607	14	2.9	14	85	10	57	26	0	0	73	0.84
15896566--15896607	18	2.3	18	92	8	68	26	0	0	73	0.83
15904685--15904726	22	1.9	22	90	0	66	26	26	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15912378--15912758	212	1.8	205	85	6	532	31	12	17	39	1.86
15915676--15915774	43	2.3	43	89	0	144	25	19	35	20	1.95
15916254--15916298	23	2.0	23	90	0	72	40	26	15	17	1.90
15919947--15920055	39	2.8	39	92	0	191	33	22	19	23	1.97
15920328--15920358	2	15.5	2	100	0	62	48	0	0	51	1.00
15920435--15920471	2	18.0	2	94	5	65	48	0	2	48	1.15
15920327--15920546	113	2.0	112	100	0	431	30	24	9	35	1.86
15920536--15920709	42	4.1	42	80	0	195	25	32	18	23	1.97
15929298--15929476	43	4.2	43	90	1	261	21	35	17	25	1.95
15930577--15930627	23	2.2	24	82	10	61	17	21	3	56	1.57
15937107--15937148	22	1.9	22	90	0	66	30	26	26	16	1.97
15937105--15937154	22	2.3	22	82	0	64	26	28	24	22	1.99
15938939--15938970	2	15.5	2	93	6	55	46	0	3	50	1.17
15943078--15943199	40	3.1	39	74	7	104	22	11	39	27	1.88
15946529--15946555	10	2.7	10	100	0	54	59	11	0	29	1.32
15946580--15946687	37	2.9	37	90	2	146	24	34	10	31	1.88
15947366--15947404	20	2.0	20	89	0	60	38	7	35	17	1.79
15947640--15947672	12	2.8	12	82	17	50	18	21	0	60	1.36
15949236--15949353	42	2.8	43	78	6	123	25	20	33	21	1.97
15949731--15949865	60	2.2	60	85	0	180	24	17	22	35	1.95
15953489--15953532	20	2.2	20	87	0	61	34	13	15	36	1.87
15957306--15957347	20	2.2	19	84	16	52	30	2	26	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15957342--15957423	37	2.2	37	93	0	137	29	9	34	26	1.88
15959415--15959457	21	2.0	21	86	0	59	16	25	9	48	1.75
15960270--15960355	43	2.0	43	90	0	136	24	19	33	22	1.97
15963925--15964023	39	2.5	40	85	4	139	33	20	19	27	1.96
15964343--15964509	84	2.0	84	83	2	210	24	32	18	24	1.97
15964355--15964509	42	3.7	42	78	0	166	23	32	19	24	1.98
15969424--15969466	21	2.0	21	81	0	50	20	27	4	46	1.71
15972231--15972333	38	2.6	40	87	3	147	18	15	42	23	1.88
15975426--15975556	43	3.0	43	86	0	181	24	19	32	23	1.97
15978376--15978553	60	3.0	59	84	4	223	23	33	17	25	1.97
15979278--15979323	16	3.1	15	72	15	51	2	30	0	67	1.03
15979362--15979399	17	2.2	18	85	4	51	0	15	7	76	1.01
15979348--15979407	18	3.4	17	81	4	66	1	21	5	71	1.14
15985802--15985912	43	2.6	44	78	4	118	27	18	33	20	1.96
15987999--15988527	60	8.9	60	85	3	674	25	31	16	27	1.96
15987999--15988536	116	4.5	118	86	4	670	24	31	16	27	1.96
15987999--15988527	176	3.0	176	86	4	684	25	31	16	27	1.96
15989156--15989197	18	2.3	18	84	15	52	16	2	0	80	0.81
15989178--15989286	54	2.0	56	85	7	152	4	29	9	56	1.50
15989274--15989312	20	2.0	19	85	5	51	0	30	0	69	0.89
15989340--15989427	29	3.0	30	77	8	92	0	32	0	67	0.91
15990312--15990492	60	3.0	61	83	9	235	22	30	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15991167--15991200	15	2.2	16	90	10	54	0	23	0	76	0.79
15993942--15994013	35	2.0	36	84	12	96	0	26	1	72	0.93
15993940--15993984	18	2.6	18	89	10	67	0	26	0	73	0.84
15993942--15993999	14	4.4	13	78	20	50	0	25	1	72	0.94
15994079--15994143	19	3.4	19	81	12	71	1	24	1	72	1.02
16004353--16004413	20	3.0	20	81	13	81	70	0	27	1	0.97
16013096--16013193	41	2.5	41	85	9	132	18	16	43	21	1.87
16013568--16013713	60	2.4	60	81	2	168	23	19	22	34	1.96
16016903--16016940	19	2.0	19	89	0	58	28	2	26	42	1.69
16017121--16017197	28	2.8	28	93	0	127	28	18	24	28	1.98
16018346--16018370	13	1.9	13	100	0	50	44	0	8	48	1.32
16022855--16022915	26	2.3	26	97	0	113	31	39	3	26	1.72
16022925--16023030	43	2.5	43	84	0	131	22	33	17	25	1.96
16029762--16029881	58	2.1	57	90	1	186	34	8	18	39	1.81
16032435--16032615	62	2.9	61	77	12	188	30	16	25	27	1.97
16032901--16032998	35	2.7	34	81	10	106	31	37	10	20	1.86
16037383--16037409	14	1.9	14	100	0	54	59	11	0	29	1.32
16037391--16037441	18	2.7	19	79	11	61	62	11	0	25	1.29
16038508--16038550	20	2.2	20	86	0	59	67	6	2	23	1.27
16047014--16047111	51	1.9	51	91	0	160	37	26	5	30	1.78
16060106--16060142	18	2.1	18	89	0	56	37	0	13	48	1.43
16063224--16063248	13	1.9	13	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16064398--16064457	30	2.1	30	84	6	79	40	21	6	31	1.79
16064623--16064660	19	2.0	19	94	0	67	42	28	0	28	1.56
16067722--16067761	20	2.0	20	90	9	64	15	37	10	37	1.80
16068590--16068671	37	2.2	37	89	4	121	30	9	34	25	1.88
16070959--16071077	37	3.2	37	82	7	134	31	8	36	24	1.85
16076039--16076241	64	3.2	64	89	2	311	28	12	32	27	1.93
16076795--16076855	31	2.0	30	96	0	104	19	18	26	34	1.94
16077315--16077354	20	2.1	19	86	13	55	42	5	17	35	1.71
16081343--16081498	37	4.2	37	87	4	208	32	10	30	25	1.90
16081773--16081823	21	2.4	21	93	0	84	19	21	19	39	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103