genome.fa.s5.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  48  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18010478--18010522	12	3.8	12	87	0	63	42	0	8	48	1.34
18010482--18010516	2	17.5	2	87	0	52	42	0	5	51	1.25
18016281--18016379	38	2.6	37	81	10	110	25	38	15	21	1.92
18016312--18016372	19	3.2	19	65	9	52	22	40	13	22	1.89
18022128--18022177	26	1.9	26	87	0	73	40	6	4	50	1.46
18030162--18030212	12	4.1	12	82	5	57	64	1	31	1	1.15
18030371--18030429	31	1.9	31	92	0	100	50	8	38	1	1.43
18030471--18030516	16	2.7	17	80	12	51	63	0	36	0	0.95
18030474--18030516	20	2.2	20	91	8	70	62	0	37	0	0.95
18031165--18031347	60	3.0	60	85	3	235	28	16	30	24	1.96
18037380--18037430	12	4.1	13	87	5	61	64	1	31	1	1.15
18037556--18037597	12	3.5	12	84	12	59	76	0	23	0	0.79
18037577--18037653	31	2.5	31	82	4	102	58	5	32	3	1.38
18037686--18037734	20	2.4	21	86	13	75	61	0	38	0	0.96
18037868--18037905	2	19.5	2	94	5	69	50	0	0	50	1.00
18038392--18038574	61	3.0	60	90	1	276	26	16	32	25	1.96
18040595--18040619	13	1.9	13	100	0	50	44	0	8	48	1.32
18047611--18047667	20	2.8	20	86	2	69	29	22	14	33	1.93
18047616--18047667	21	2.5	20	87	3	68	30	21	13	34	1.92
18054160--18054184	5	5.0	5	100	0	50	60	20	0	20	1.37
18054735--18054803	32	2.2	32	97	0	129	39	13	5	42	1.68
18057700--18057818	54	2.2	54	87	0	166	26	21	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18057739--18057841	54	1.9	54	85	0	143	30	21	21	27	1.98
18064390--18064433	17	2.6	17	85	0	61	25	2	0	72	0.96
18065518--18065618	33	3.1	32	80	5	112	55	21	9	12	1.66
18073725--18073773	21	2.3	21	86	10	73	14	20	8	57	1.63
18083819--18083915	38	2.5	38	88	6	133	19	19	42	18	1.90
18086180--18086235	18	3.2	17	77	22	62	1	30	0	67	1.01
18087001--18087043	19	2.3	18	84	4	59	41	4	0	53	1.21
18092870--18092910	19	2.3	19	88	12	61	39	0	4	56	1.21
18093465--18093507	21	2.1	20	82	4	50	9	30	6	53	1.59
18097435--18097526	36	2.5	37	82	3	105	22	9	42	25	1.84
18099016--18099053	17	2.2	18	90	4	60	71	13	0	15	1.16
18099016--18099053	6	6.5	6	87	6	60	71	13	0	15	1.16
18101518--18101619	38	2.7	37	84	11	127	22	16	38	22	1.93
18108271--18108374	52	2.0	51	94	1	181	22	13	32	31	1.92
18115272--18115311	20	2.1	19	85	4	53	25	7	10	57	1.57
18120609--18120646	19	2.0	19	100	0	76	42	31	0	26	1.56
18121076--18121238	60	2.7	59	81	6	179	25	33	15	25	1.96
18122186--18122219	15	2.2	16	89	5	52	0	17	2	79	0.86
18130516--18130571	24	2.3	24	84	6	69	69	0	25	5	1.09
18130522--18130572	5	10.4	5	75	12	52	72	0	23	3	1.01
18155229--18155317	39	2.3	39	82	9	101	37	22	16	23	1.94
18163836--18163893	19	3.2	18	79	20	68	0	29	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18185926--18186020	43	2.2	43	81	3	111	27	22	31	18	1.97
18193699--18193939	77	3.1	77	93	0	392	40	8	12	38	1.74
18201007--18201107	36	2.8	36	86	0	130	22	17	35	23	1.95
18211495--18211546	28	1.9	27	84	7	70	30	19	17	32	1.95
18228232--18228288	29	2.0	29	85	0	78	21	12	17	49	1.79
18230666--18230696	2	15.5	2	100	0	62	48	0	0	51	1.00
18242357--18242429	36	2.1	35	94	2	128	24	27	5	41	1.77
18242706--18242749	22	2.0	22	82	4	54	20	15	2	61	1.45
18247977--18248015	2	19.5	2	94	0	69	48	2	0	48	1.15
18248838--18248893	20	2.8	20	76	10	60	35	10	25	28	1.89
18258705--18258743	2	19.5	2	100	0	78	51	0	0	48	1.00
18262112--18262204	32	2.8	33	77	9	109	25	16	24	33	1.96
18264795--18264820	13	2.0	13	100	0	52	46	7	0	46	1.31
18272051--18272088	19	2.0	19	94	0	67	28	0	28	42	1.56
18273458--18273482	13	1.9	13	100	0	50	44	0	8	48	1.32
18288014--18288072	27	2.2	27	87	0	82	30	10	20	38	1.86
18288021--18288078	27	2.1	27	83	0	71	39	6	18	34	1.78
18289793--18289989	73	2.7	74	78	11	194	43	16	18	21	1.88
18290376--18290543	61	2.7	62	84	7	198	25	15	24	34	1.95
18290376--18290473	32	3.0	32	72	8	88	22	16	25	35	1.94
18295735--18295845	35	3.3	33	75	14	111	32	25	13	28	1.94
18295766--18295862	31	3.0	32	71	11	97	37	26	13	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18295691--18295862	66	2.6	66	86	4	222	36	26	12	25	1.91
18295766--18295865	35	3.0	32	72	17	96	38	27	13	22	1.90
18296254--18296447	73	2.7	72	80	10	200	18	20	20	40	1.91
18297673--18297719	16	2.9	16	78	12	60	19	6	12	61	1.52
18300561--18300585	13	1.9	13	100	0	50	48	8	0	44	1.32
18311179--18311215	19	1.9	19	100	0	74	27	2	32	37	1.71
18311259--18311311	28	1.9	27	88	3	79	30	20	22	26	1.98
18314636--18314758	43	2.9	43	82	4	124	23	36	14	25	1.93
18317230--18317264	17	2.1	17	94	0	61	31	22	37	8	1.85
18319397--18319429	17	1.9	17	93	0	57	48	3	6	42	1.43
18322691--18322736	20	2.2	21	77	14	51	8	30	8	52	1.62
18327398--18327438	14	2.6	17	82	17	54	48	7	7	36	1.59
18332764--18332802	20	2.0	20	89	0	60	12	25	10	51	1.71
18333528--18333572	2	22.5	2	100	0	90	48	0	0	51	1.00
18344772--18344933	73	2.2	72	79	6	184	41	18	19	20	1.91
18346220--18346338	35	3.4	35	75	3	116	21	14	31	33	1.93
18350428--18350523	38	2.5	39	81	8	106	25	38	14	21	1.91
18353061--18353085	2	12.5	2	100	0	50	48	0	0	52	1.00
18353735--18353840	2	52.5	2	98	1	203	50	0	49	0	1.00
18354548--18354630	35	2.3	36	85	4	105	22	14	33	28	1.94
18355960--18356021	4	15.5	4	78	18	51	0	29	0	70	0.87
18355960--18356025	16	4.3	15	73	7	62	0	28	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18358840--18358958	37	3.2	37	86	11	181	29	10	33	26	1.90
18359022--18359060	2	19.5	2	100	0	78	0	0	48	51	1.00
18365437--18365485	24	2.0	24	84	7	64	2	22	0	75	0.90
18365452--18365489	12	3.2	12	88	0	58	0	23	0	76	0.79
18366385--18366424	19	2.2	19	95	4	73	42	5	0	52	1.23
18372348--18372376	15	1.9	15	100	0	58	27	24	20	27	1.99
18373380--18373418	18	2.2	18	86	9	53	51	0	2	46	1.14
18375020--18375145	42	3.0	42	88	6	182	26	19	32	21	1.97
18380165--18380232	33	2.1	33	97	0	127	35	22	8	33	1.85
18385997--18386037	2	20.5	2	94	0	73	0	51	0	48	1.00
18390293--18390398	38	2.7	40	79	2	117	23	15	37	23	1.93
18413810--18413997	72	2.6	73	86	0	252	23	16	20	38	1.92
18422915--18422955	21	1.9	22	90	5	66	51	7	24	17	1.70
18422915--18422959	20	2.2	21	84	11	58	55	6	22	15	1.63
18422913--18422960	21	2.3	20	79	10	60	56	6	22	14	1.61
18425177--18425220	22	2.0	22	91	8	72	27	9	22	40	1.84
18429962--18430002	21	1.9	22	90	5	66	51	7	24	17	1.70
18429962--18430006	20	2.2	21	84	11	58	55	6	22	15	1.63
18429961--18430008	21	2.2	21	81	3	60	58	6	20	14	1.58
18436455--18436490	2	18.0	2	100	0	72	50	0	0	50	1.00
18443483--18443521	2	19.0	2	94	5	69	48	2	0	48	1.15
18445312--18445350	19	2.1	19	85	0	51	35	25	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18446723--18446902	91	2.0	90	94	1	315	41	15	11	31	1.81
18451143--18451174	2	16.0	2	100	0	64	50	0	0	50	1.00
18459489--18459732	35	7.2	35	73	12	181	34	27	13	25	1.93
18459481--18459735	67	3.8	67	89	2	370	34	26	13	25	1.93
18462612--18462668	27	2.1	27	80	6	62	33	21	8	36	1.84
18466017--18466097	39	2.1	39	95	4	146	48	7	9	34	1.65
18467257--18467432	35	5.2	35	73	12	127	35	25	13	26	1.92
18467270--18467435	32	5.0	32	73	9	127	35	24	13	26	1.93
18467260--18467435	67	2.6	66	84	7	221	35	25	13	26	1.92
18470862--18470890	9	3.0	10	90	10	51	41	0	6	51	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103