genome.fa.s5.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  70  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26243344--26243481	47	2.9	47	96	0	249	46	21	2	30	1.63
26244056--26244129	21	3.5	21	86	0	103	36	14	24	24	1.93
26247425--26247462	15	2.5	15	84	16	51	42	0	2	55	1.14
26247680--26247717	11	3.5	11	78	7	51	57	0	0	42	0.98
26253870--26253894	13	1.9	13	100	0	50	48	8	0	44	1.32
26255119--26255156	19	2.0	19	100	0	76	42	31	0	26	1.56
26257629--26257676	19	2.6	19	86	3	71	54	0	6	39	1.26
26258580--26258631	4	13.2	4	95	4	97	73	0	26	0	0.84
26261391--26261452	26	2.4	26	86	10	83	45	1	3	50	1.27
26262396--26262956	8	71.9	8	82	6	598	49	14	0	35	1.47
26262404--26262958	40	13.7	40	86	5	668	49	14	0	35	1.47
26270333--26270396	28	2.2	29	83	2	76	46	18	6	28	1.73
26275884--26275930	22	2.1	23	88	4	69	51	14	4	29	1.62
26288681--26288716	15	2.4	15	90	0	54	36	5	22	36	1.78
26288934--26289019	33	2.6	32	85	3	109	31	0	1	67	0.98
26289007--26289110	25	3.6	29	72	22	85	28	5	0	64	1.23
26288993--26289097	55	1.9	56	86	9	153	30	5	0	63	1.17
26289094--26289124	14	2.1	15	94	5	55	29	0	3	67	1.06
26290565--26290700	69	2.0	69	97	0	254	30	12	19	37	1.89
26291811--26291890	33	2.6	31	80	9	94	30	7	0	62	1.23
26296355--26296493	69	2.0	69	95	0	251	26	21	15	35	1.94
26297064--26297099	2	18.5	2	94	5	65	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26298683--26299108	217	2.0	215	92	0	708	39	20	13	26	1.90
26303728--26303804	31	2.5	31	85	2	93	38	12	2	45	1.57
26304443--26304475	17	2.0	17	88	5	50	42	0	0	57	0.98
26311644--26312140	188	2.6	189	81	9	572	30	16	14	38	1.88
26337319--26337386	27	2.4	29	87	7	95	66	2	1	29	1.15
26339844--26339916	35	2.1	36	87	7	105	46	0	6	46	1.29
26341338--26341370	14	2.4	14	90	10	50	51	0	0	48	1.00
26344119--26344175	30	1.9	30	100	0	114	38	14	7	40	1.73
26344467--26344708	93	2.6	91	81	3	272	35	17	9	37	1.82
26350041--26350256	100	2.1	102	86	5	296	35	14	18	31	1.90
26350227--26350276	21	2.3	22	82	3	66	32	10	26	32	1.89
26350121--26350517	124	3.2	122	78	8	344	34	13	19	31	1.91
26350470--26350573	21	4.8	22	69	9	72	31	12	23	32	1.92
26350640--26350698	21	2.8	20	85	12	73	40	8	20	30	1.82
26352104--26352141	20	1.9	20	94	0	67	28	5	18	47	1.70
26352498--26352556	30	1.9	31	83	10	77	50	3	20	25	1.63
26353366--26353390	13	1.9	13	100	0	50	52	0	0	48	1.00
26362498--26362534	14	2.6	14	91	8	58	72	0	18	8	1.08
26368375--26368406	12	2.7	12	95	0	55	53	9	3	34	1.49
26372553--26372645	36	2.6	36	92	0	150	27	29	12	30	1.93
26378759--26378792	17	2.0	17	88	0	50	38	0	11	50	1.39
26378878--26378989	36	3.1	36	88	0	161	26	31	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26381375--26381407	17	1.9	17	88	11	50	0	30	0	69	0.88
26384014--26384051	18	2.1	18	85	14	51	81	7	0	10	0.87
26384030--26384106	37	2.1	36	80	9	84	75	9	6	9	1.19
26385709--26385764	26	2.2	26	80	6	60	42	1	1	53	1.21
26389163--26389227	31	2.1	31	91	0	103	41	6	7	44	1.58
26390962--26391000	19	2.1	19	85	0	51	43	2	0	53	1.14
26391522--26391553	15	2.3	15	89	10	50	34	0	3	62	1.11
26393326--26393373	27	1.9	24	84	16	62	54	0	4	41	1.20
26398519--26398572	26	2.0	27	85	3	74	35	18	14	31	1.91
26398544--26398701	86	2.0	77	83	14	196	41	17	8	32	1.79
26400564--26400842	90	3.1	88	81	4	256	23	35	15	25	1.94
26400645--26400842	91	2.2	89	85	3	263	21	36	14	28	1.92
26406475--26406566	27	3.3	28	75	15	93	48	2	31	17	1.59
26406536--26406603	6	11.3	6	87	0	91	51	1	27	19	1.55
26406475--26406602	30	4.3	30	74	16	104	50	2	29	17	1.58
26407968--26408007	16	2.5	16	95	0	71	40	7	12	40	1.71
26408096--26408149	2	27.0	2	96	0	99	48	0	1	50	1.11
26408665--26408701	12	3.0	12	92	4	56	48	10	24	16	1.77
26409087--26409145	31	1.9	31	89	0	91	40	16	15	27	1.89
26410423--26410504	22	3.8	22	83	3	112	19	10	25	43	1.83
26410524--26410765	23	10.2	23	83	8	211	33	26	13	26	1.93
26410648--26410884	26	9.7	26	82	8	160	37	26	13	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26410781--26410834	21	2.6	21	100	0	108	35	35	14	14	1.88
26410558--26410876	168	1.9	169	82	7	407	36	26	13	23	1.92
26413373--26413406	17	2.0	17	100	0	68	35	5	23	35	1.79
26415751--26415787	19	1.9	19	94	0	65	29	0	27	43	1.55
26417025--26417050	13	2.0	13	100	0	52	46	0	7	46	1.31
26418250--26418289	15	2.7	15	84	0	53	35	5	12	47	1.63
26423108--26423174	13	5.5	12	70	21	50	38	0	2	58	1.14
26437648--26437802	77	2.0	77	98	0	301	54	11	10	22	1.67
26439891--26439925	2	17.5	2	100	0	70	48	0	0	51	1.00
26440949--26440989	21	2.0	21	85	9	57	29	9	2	58	1.43
26450175--26450287	41	2.7	41	91	1	181	44	21	13	21	1.86
26450131--26450358	124	1.8	126	81	7	286	42	17	17	22	1.89
26450240--26450483	84	2.9	85	82	9	252	40	13	20	25	1.89
26450114--26450539	42	10.2	41	74	12	217	41	14	19	23	1.89
26450410--26450536	39	3.2	38	78	10	128	39	12	22	25	1.89
26453694--26456367	889	3.0	886	85	2	3467	32	20	14	32	1.93
26467293--26467342	24	2.1	24	84	0	64	22	16	6	56	1.62
26469931--26470006	40	1.9	40	91	0	125	35	23	22	18	1.96
26478189--26478265	40	1.9	41	89	2	120	33	24	22	19	1.97
26479724--26479829	38	2.7	39	82	5	117	24	39	14	21	1.90
26486295--26486372	27	2.9	27	82	0	102	35	17	5	41	1.72
26486497--26486574	39	2.0	39	100	0	156	53	15	7	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26486659--26486702	22	2.0	22	86	0	61	47	25	9	18	1.77
26486820--26486930	51	2.2	50	82	4	134	37	19	9	32	1.85
26489773--26489822	21	2.4	21	86	0	73	30	16	14	40	1.87
26496681--26496928	81	3.1	80	85	1	318	28	33	18	19	1.95
26499202--26499290	31	2.9	31	86	0	124	37	21	15	25	1.93
26499267--26499331	25	2.6	25	87	0	103	23	27	23	26	2.00
26499377--26499755	55	6.9	55	85	2	467	43	31	13	11	1.80
26499367--26499755	165	2.4	165	86	3	532	42	31	14	12	1.82
26503480--26503542	23	2.7	23	87	0	81	26	33	12	26	1.93
26503501--26503555	23	2.4	23	100	0	110	23	30	20	25	1.98
26503475--26504048	104	5.5	104	80	2	582	23	34	13	28	1.93
26503683--26503748	23	2.8	24	77	4	64	21	31	15	31	1.94
26503475--26504047	208	2.8	208	88	0	792	23	34	13	28	1.93
26503893--26503947	23	2.4	23	81	0	65	25	29	12	32	1.93
26504000--26504117	23	5.1	23	74	8	87	27	35	10	27	1.89
26534328--26534367	19	2.0	20	90	4	64	30	2	27	40	1.70
26537997--26538044	24	2.0	24	84	8	62	16	20	10	52	1.73
26540361--26540389	6	4.8	6	100	0	58	13	0	86	0	0.58
26547628--26547677	25	2.0	25	96	0	91	56	10	8	26	1.60
26547377--26547919	283	1.9	283	98	0	1041	43	15	14	25	1.85
26554136--26554167	2	16.0	2	93	0	55	46	50	0	3	1.17
26557826--26557874	22	2.2	22	85	0	62	38	0	2	59	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26557829--26557880	22	2.3	23	80	10	61	36	0	3	59	1.16
26557839--26557894	22	2.5	21	81	16	60	33	0	5	60	1.19
26560348--26560404	2	29.5	2	84	13	75	45	1	0	52	1.11
26560922--26560952	2	15.5	2	100	0	62	51	0	0	48	1.00
26562752--26562788	14	2.6	14	95	0	65	35	0	13	51	1.41
26562748--26562792	18	2.5	18	96	0	81	37	0	11	51	1.38
26563496--26563707	106	2.1	100	82	7	246	52	2	11	33	1.52
26565694--26565748	27	2.0	27	100	0	110	45	0	29	25	1.54
26566349--26566390	22	1.9	22	85	9	59	57	2	0	40	1.12
26567746--26567802	18	3.2	18	70	9	62	42	12	1	43	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103