genome.fa.s5.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  46  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17257312--17257347	17	2.1	17	94	0	63	55	0	8	36	1.30
17258780--17258828	24	2.0	25	88	8	73	4	28	0	67	1.09
17258774--17258815	14	2.8	15	82	10	50	4	26	0	69	1.08
17259349--17259452	53	1.9	54	86	3	147	20	14	36	28	1.92
17262613--17262646	17	2.0	17	88	11	52	47	14	0	38	1.45
17262821--17262961	29	4.9	28	85	5	183	36	13	11	38	1.81
17262788--17262959	29	5.9	28	82	7	182	38	12	10	38	1.78
17262798--17262959	58	2.8	57	85	4	207	40	12	9	37	1.76
17282587--17282641	4	13.8	4	100	0	110	23	0	25	50	1.49
17282639--17282675	2	18.5	2	100	0	74	0	0	48	51	1.00
17293010--17293047	19	2.0	19	94	0	67	42	28	0	28	1.56
17295967--17296116	74	2.0	74	89	0	228	38	14	23	24	1.91
17301242--17301285	21	2.1	21	100	0	88	9	29	22	38	1.85
17306416--17306632	109	2.0	108	100	0	425	33	13	9	43	1.76
17310349--17310520	42	4.1	42	87	3	238	25	16	33	25	1.96
17310546--17310572	2	13.5	2	100	0	54	48	0	0	51	1.00
17310572--17310596	2	12.5	2	100	0	50	0	0	48	52	1.00
17316682--17316723	21	2.0	21	95	0	75	35	28	14	21	1.92
17317823--17317893	35	2.0	36	83	8	92	33	23	15	26	1.95
17329818--17329859	6	6.8	6	86	13	59	0	21	0	78	0.75
17329828--17329862	11	3.1	11	95	4	61	0	17	0	82	0.66
17329826--17329859	17	2.0	17	100	0	68	0	17	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17339791--17339822	7	4.6	7	100	0	64	40	28	0	31	1.57
17340000--17340065	33	2.0	33	100	0	132	54	0	0	45	0.99
17344512--17344716	35	5.9	35	81	6	204	38	5	28	26	1.80
17345951--17346005	28	2.0	28	85	7	76	34	20	16	29	1.94
17347237--17347317	42	1.9	42	94	0	144	20	22	34	22	1.97
17347552--17347613	26	2.4	26	91	0	97	25	3	38	32	1.72
17348670--17348780	42	2.6	42	91	2	179	24	21	35	18	1.96
17349703--17349892	55	3.6	55	88	6	277	27	37	14	20	1.91
17355633--17355692	28	2.1	30	84	6	79	41	20	6	31	1.78
17361693--17361752	28	2.1	28	81	6	68	35	18	16	30	1.93
17363138--17363293	34	4.6	34	75	5	127	35	24	10	29	1.89
17369958--17370086	67	1.9	67	90	0	204	35	8	20	34	1.84
17372129--17372181	26	2.0	26	100	0	106	37	5	22	33	1.78
17374337--17374373	2	18.5	2	100	0	74	48	0	0	51	1.00
17374480--17374553	35	2.1	34	82	7	87	25	0	16	58	1.38
17381294--17381472	93	2.0	90	84	3	232	31	20	13	34	1.92
17385823--17385848	2	13.0	2	100	0	52	50	0	0	50	1.00
17387085--17387114	13	2.2	14	94	5	53	0	26	0	73	0.84
17387355--17388375	504	2.0	503	93	1	1751	23	24	8	43	1.80
17389555--17389676	21	5.5	21	67	22	70	46	2	1	49	1.25
17389565--17389677	42	2.5	42	80	11	118	46	2	1	49	1.26
17389607--17389682	21	3.6	21	77	7	82	47	1	1	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17399796--17399826	6	5.2	6	100	0	62	51	16	16	16	1.77
17400431--17400463	15	2.2	15	100	0	66	33	0	6	60	1.21
17401277--17401320	18	2.4	18	80	0	61	47	0	2	50	1.13
17402186--17402213	1	28.0	1	100	0	56	100	0	0	0	0.00
17406351--17406406	22	2.5	22	77	8	60	50	1	3	44	1.29
17409686--17409835	72	2.1	71	86	3	203	23	42	8	26	1.83
17413584--17413621	9	4.2	9	80	12	51	34	0	0	65	0.93
17413585--17413623	18	2.2	17	90	4	60	38	0	0	61	0.96
17414939--17414964	3	8.7	3	100	0	52	34	0	0	65	0.93
17415871--17415930	28	2.1	28	87	6	86	35	20	16	28	1.94
17416025--17416059	15	2.2	16	90	5	54	31	17	14	37	1.89
17418984--17419046	23	2.7	23	90	0	99	41	4	36	17	1.71
17419520--17419612	36	2.6	36	77	5	100	31	21	16	31	1.95
17419793--17419817	13	1.9	13	100	0	50	60	0	16	24	1.36
17423364--17423663	68	4.5	68	78	9	285	36	10	18	35	1.85
17423817--17423895	31	2.6	31	83	2	88	25	17	34	22	1.96
17425107--17425147	12	3.1	14	80	16	52	70	0	29	0	0.87
17425107--17425150	19	2.3	20	84	11	65	68	0	31	0	0.90
17427755--17427788	2	17.0	2	100	0	68	50	0	0	50	1.00
17427900--17427932	2	16.5	2	100	0	66	48	0	0	51	1.00
17427973--17428056	42	2.0	42	90	0	132	21	33	21	23	1.97
17429268--17429327	25	2.4	25	91	5	95	26	18	31	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17430235--17430380	36	4.1	35	88	3	202	28	35	13	23	1.92
17442165--17442224	27	2.3	26	79	2	66	1	28	3	66	1.17
17453575--17453615	19	2.2	19	86	4	57	46	0	0	53	1.00
17453580--17453623	19	2.3	19	80	0	52	54	0	0	45	0.99
17453578--17453625	16	3.1	15	77	11	53	50	0	0	50	1.00
17455883--17455952	29	2.4	29	97	0	131	21	15	32	30	1.94
17455937--17455996	25	2.4	25	94	0	102	26	16	33	23	1.96
17458184--17458258	25	3.0	25	94	1	125	12	25	16	46	1.81
17458251--17458311	10	6.0	10	70	11	52	0	24	1	73	0.92
17465342--17465505	28	5.6	28	82	7	184	38	10	11	39	1.76
17465342--17465504	59	2.8	58	85	4	213	38	10	11	39	1.76
17466602--17466679	40	2.0	40	92	0	129	33	26	10	29	1.89
17469110--17469134	13	1.9	13	100	0	50	44	0	8	48	1.32
17473003--17473041	10	3.8	10	80	6	51	51	20	2	25	1.60
17481497--17481543	20	2.3	21	81	3	60	51	0	8	40	1.33
17482500--17482524	13	1.9	13	100	0	50	48	8	0	44	1.32
17484257--17484313	21	2.8	20	76	7	60	7	14	0	78	0.94
17494811--17494901	29	3.1	27	76	12	83	40	9	9	39	1.72
17499584--17499655	35	2.1	35	94	0	126	29	8	31	30	1.87
17500794--17500848	20	2.7	21	80	8	69	36	16	18	29	1.92
17506819--17506862	19	2.3	18	81	11	61	50	9	29	11	1.69
17515432--17515470	20	2.0	20	84	0	51	46	10	25	17	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17516092--17516123	16	1.9	17	93	6	57	28	12	37	21	1.90
17521015--17521058	18	2.4	19	88	3	63	36	4	0	59	1.18
17522876--17522976	37	2.7	38	89	4	159	22	35	19	21	1.96
17528481--17528515	18	1.9	18	88	0	52	34	2	2	60	1.26
17546890--17546914	13	1.9	13	100	0	50	48	0	0	52	1.00
17548068--17548131	28	2.2	28	83	2	74	43	20	7	28	1.79
17554542--17554568	2	13.5	2	100	0	54	48	0	0	51	1.00
17555335--17555372	2	20.0	2	89	10	62	52	0	0	47	1.00
17558458--17558532	39	1.9	39	81	5	89	20	20	16	44	1.87
17559927--17559971	21	2.1	22	88	12	67	37	15	6	40	1.74
17560598--17560656	26	2.3	26	79	5	66	1	28	3	66	1.18
17560757--17560798	22	2.0	22	85	4	59	26	16	4	52	1.63
17560876--17560935	28	2.1	30	84	6	79	41	18	8	31	1.80
17563388--17563465	27	2.9	27	75	7	77	17	29	21	30	1.97
17564519--17564799	107	2.6	109	79	3	284	14	27	26	31	1.95
17564830--17564930	25	4.0	25	79	3	94	24	31	18	24	1.98
17564552--17565047	27	18.8	26	73	7	241	18	29	22	28	1.98
17564848--17565047	78	2.6	77	80	4	231	22	32	17	28	1.96
17564847--17565051	52	4.0	52	75	8	166	22	31	17	27	1.97
17569607--17569685	2	41.0	2	82	12	103	46	1	0	50	1.09
17574374--17574432	25	2.4	25	82	0	73	25	18	30	25	1.98
17585176--17585278	38	2.6	40	90	3	165	21	40	17	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17585211--17585274	19	3.4	19	68	8	58	20	40	17	21	1.91
17589995--17590033	2	19.5	2	100	0	78	51	0	0	48	1.00
17592036--17592137	38	2.6	38	84	3	123	21	18	38	21	1.94
17593573--17593622	22	2.2	22	82	10	57	54	4	16	26	1.59
17593775--17593961	31	6.1	31	77	7	157	29	21	12	35	1.91
17598712--17598766	20	2.8	19	83	8	74	49	1	14	34	1.54
17598718--17598766	20	2.5	20	89	0	80	46	2	14	36	1.56
17611680--17611717	20	1.9	20	88	0	58	52	2	0	44	1.14
17615708--17615769	2	31.5	2	90	3	99	3	48	0	48	1.17
17615979--17616021	20	2.2	20	91	0	68	39	6	34	18	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103