genome.fa.s5.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  67  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25183894--25183932	10	3.8	10	83	6	51	28	0	20	51	1.48
25183894--25183926	11	3.1	11	91	4	50	24	0	21	54	1.45
25186610--25186931	174	1.8	173	82	3	405	38	7	6	47	1.58
25187156--25187223	7	9.3	7	70	20	50	42	1	0	55	1.08
25187148--25187192	23	2.0	23	86	8	65	40	0	0	60	0.97
25187165--25187220	16	3.7	16	75	18	57	39	1	0	58	1.08
25187158--25187206	23	2.1	23	85	7	64	36	2	0	61	1.08
25189638--25189688	19	2.7	19	90	6	68	58	0	0	41	0.98
25189791--25189884	33	2.8	33	96	0	170	39	11	13	35	1.82
25190057--25190112	29	1.9	29	85	0	76	50	5	14	30	1.65
25217140--25217175	18	2.0	18	100	0	72	33	22	16	27	1.95
25224129--25224168	11	3.7	11	86	6	64	12	40	0	47	1.41
25224126--25224172	21	2.2	21	100	0	94	14	38	0	46	1.45
25225808--25225939	66	2.0	66	98	0	255	49	0	10	40	1.38
25227176--25227200	13	1.9	13	100	0	50	84	0	0	16	0.63
25233181--25233218	19	2.0	19	94	0	67	42	28	0	28	1.56
25239170--25239194	13	1.9	13	100	0	50	44	0	8	48	1.32
25241410--25241459	22	2.3	22	82	0	64	26	18	22	34	1.96
25241609--25241666	22	2.6	22	80	0	71	31	13	18	36	1.90
25244869--25244904	16	2.2	16	90	0	54	25	11	25	38	1.88
25244981--25245046	23	2.9	23	75	4	71	37	27	10	24	1.88
25244981--25245028	22	2.1	23	84	3	62	37	25	12	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25245011--25245133	22	5.5	22	65	9	70	48	21	5	24	1.71
25245004--25245133	44	2.9	44	73	1	116	47	20	6	24	1.74
25245250--25245426	61	3.0	60	82	4	196	40	20	6	31	1.79
25248426--25248494	33	2.1	33	81	10	79	20	5	7	66	1.37
25251820--25251852	17	1.9	17	93	0	57	21	21	6	51	1.69
25265907--25265956	26	1.9	26	91	0	82	18	10	24	48	1.78
25270079--25270108	12	2.5	12	94	0	51	0	3	3	93	0.42
25270086--25270110	13	1.9	13	100	0	50	0	0	8	92	0.40
25271294--25271554	133	2.0	133	86	0	369	26	15	42	14	1.86
25291387--25291431	23	2.0	23	90	0	72	31	13	31	24	1.93
25291459--25291541	23	3.6	23	78	3	94	25	14	33	26	1.94
25291455--25291756	47	6.5	47	80	4	265	25	18	30	24	1.98
25292368--25292565	31	6.5	31	82	5	244	23	20	19	36	1.95
25292401--25292454	26	2.1	26	92	0	90	22	20	20	37	1.95
25293418--25293444	13	2.1	13	100	0	54	85	0	14	0	0.61
25295256--25295324	21	3.4	19	78	13	66	76	0	1	21	0.86
25302648--25302756	31	3.5	31	87	5	157	35	19	17	27	1.94
25303108--25303231	63	2.0	63	86	0	176	33	13	33	20	1.91
25308125--25308159	2	17.5	2	100	0	70	51	48	0	0	1.00
25327322--25327351	2	15.0	2	92	0	51	0	46	0	53	1.00
25330731--25331405	343	2.0	343	90	0	1071	33	9	17	39	1.82
25336337--25336371	18	1.9	18	88	0	52	37	0	5	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25348763--25348918	74	2.1	74	84	1	206	40	6	7	45	1.58
25348993--25349022	14	2.2	14	94	5	53	43	0	0	56	0.99
25349406--25349501	28	3.4	28	83	1	120	36	28	10	25	1.89
25358600--25358689	3	29.3	3	72	14	51	26	4	1	67	1.16
25374875--25374905	2	15.5	2	100	0	62	0	48	0	51	1.00
25374877--25375025	76	2.0	76	94	0	262	18	44	11	26	1.83
25374878--25375050	76	2.3	76	87	4	242	16	43	12	27	1.83
25375480--25375516	11	2.9	14	84	15	53	13	5	0	81	0.86
25376497--25376863	67	5.5	66	81	5	429	48	17	6	27	1.72
25376848--25376880	13	2.3	15	90	10	52	48	27	0	24	1.51
25379065--25379099	15	2.3	15	85	0	52	42	5	2	48	1.41
25380365--25380403	15	2.6	15	75	0	51	74	2	0	23	0.94
25387115--25387149	11	3.1	12	88	12	56	54	0	37	8	1.31
25402941--25403027	25	3.5	25	87	10	101	14	26	11	47	1.79
25402955--25403055	25	4.0	25	84	6	123	13	26	14	44	1.83
25403212--25403297	34	2.5	34	81	7	93	30	22	15	32	1.94
25403549--25403619	27	2.5	29	80	13	85	0	21	11	67	1.21
25404677--25404713	10	3.5	11	82	10	51	24	0	21	54	1.45
25406173--25406217	25	1.9	23	82	13	56	48	8	2	40	1.47
25407219--25407264	19	2.4	19	89	7	67	45	2	0	52	1.13
25410441--25410502	29	2.2	28	88	2	88	29	6	17	46	1.73
25414280--25414540	129	2.0	129	87	2	373	29	30	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25415916--25415981	28	2.3	29	86	2	89	45	19	6	28	1.74
25417852--25417906	22	2.6	22	83	11	62	32	5	0	61	1.19
25420257--25420296	3	13.3	3	100	0	80	32	0	0	67	0.91
25421022--25421103	24	3.6	22	78	15	62	45	4	3	46	1.42
25421051--25421103	21	2.5	20	82	14	54	41	3	3	50	1.38
25425138--25425255	60	2.0	60	84	0	155	25	10	19	44	1.82
25427190--25427227	19	2.0	19	94	0	67	28	0	28	42	1.56
25428584--25428608	13	1.9	13	100	0	50	44	0	8	48	1.32
25429064--25429109	19	2.4	20	82	10	60	54	0	2	43	1.12
25430783--25430807	13	1.9	13	100	0	50	44	0	8	48	1.32
25436715--25436742	2	14.0	2	100	0	56	50	0	0	50	1.00
25437048--25437092	2	22.5	2	86	0	63	48	4	2	44	1.35
25444502--25444526	13	1.9	13	100	0	50	44	0	8	48	1.32
25447093--25447127	16	2.1	17	89	5	54	37	8	8	45	1.65
25476009--25476046	19	2.0	19	94	0	67	42	28	0	28	1.56
25483830--25483891	26	2.4	26	97	0	115	30	16	4	48	1.67
25484712--25484773	31	2.0	31	90	0	97	29	30	22	17	1.97
25490887--25490913	2	13.5	2	100	0	54	0	0	48	51	1.00
25501550--25501579	3	10.0	3	100	0	60	33	0	0	66	0.92
25512965--25513045	33	2.5	33	97	0	153	14	25	12	46	1.80
25513669--25513730	9	6.7	9	77	14	63	25	1	0	72	0.94
25513658--25513718	18	3.1	19	83	11	79	26	1	0	72	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25531606--25531659	23	2.2	25	81	15	69	33	0	0	66	0.92
25531678--25531718	17	2.4	17	88	11	66	75	0	4	19	0.98
25531678--25531718	18	2.3	18	87	4	66	75	0	4	19	0.98
25531829--25531869	16	2.5	17	80	15	50	41	12	0	46	1.41
25533611--25533711	52	2.0	52	86	3	143	49	15	5	28	1.68
25534032--25534214	90	2.0	93	88	3	273	43	8	13	34	1.73
25548570--25548670	29	3.6	28	77	10	91	41	8	11	37	1.73
25548596--25548672	29	2.7	28	84	4	93	37	6	12	42	1.69
25548669--25548744	25	3.0	25	78	17	95	26	17	17	39	1.91
25548676--25548874	45	4.2	45	76	9	193	25	17	20	36	1.94
25548754--25549105	24	15.2	24	72	8	178	24	18	20	36	1.95
25548703--25549012	93	3.4	92	81	6	376	25	18	20	35	1.95
25548773--25549120	69	5.0	69	76	9	359	25	19	20	34	1.96
25548893--25548940	21	2.3	21	96	0	87	35	22	20	20	1.96
25553071--25553099	10	2.7	11	89	10	51	68	0	10	20	1.18
25573791--25574359	44	12.9	44	78	5	468	40	14	15	29	1.86
25573928--25574348	175	2.4	179	80	5	478	40	13	16	29	1.87
25574207--25574350	43	3.0	49	77	16	158	40	15	13	29	1.87
25575181--25575214	6	5.7	6	90	10	52	73	14	0	11	1.10
25575181--25575211	13	2.5	13	94	5	55	70	16	0	12	1.16
25576249--25576283	16	2.2	16	100	0	70	54	11	17	17	1.71
25580442--25580501	30	2.0	30	96	0	111	35	16	18	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25581432--25581487	26	2.2	26	81	9	62	66	0	7	26	1.18
25586480--25586536	27	2.1	27	96	0	105	42	19	5	33	1.74
25594322--25594391	29	2.3	30	85	7	97	42	12	14	30	1.83
25607215--25607281	32	2.0	34	91	5	111	43	11	7	37	1.70
25607175--25607650	151	3.2	144	88	5	742	43	9	8	38	1.68
25607527--25607578	18	3.1	18	67	27	51	42	13	5	38	1.68
25607512--25607578	32	2.0	33	94	5	118	41	11	7	38	1.70
25608351--25608385	13	2.6	13	86	4	52	42	17	11	28	1.83
25615347--25615427	18	4.7	17	69	13	58	39	1	3	55	1.25
25615344--25615443	51	2.0	50	90	2	155	42	2	4	52	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103