genome.fa.s5.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  87  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32106691--32106891	99	2.0	99	100	0	402	49	19	8	21	1.76
32108237--32108380	76	1.9	76	86	0	207	39	19	15	25	1.91
32116140--32116294	80	1.9	79	90	1	247	36	21	10	31	1.88
32121058--32121083	3	8.7	3	100	0	52	34	0	65	0	0.93
32121772--32121806	12	2.8	13	87	12	56	45	0	31	22	1.53
32127465--32127518	2	27.5	2	96	3	101	50	0	0	50	1.00
32137901--32137945	15	3.0	15	87	6	56	51	2	0	46	1.13
32138158--32138258	30	3.4	29	80	5	121	54	0	3	41	1.19
32165587--32165627	2	20.5	2	100	0	82	48	0	0	51	1.00
32175189--32175397	105	2.0	106	85	2	287	40	8	17	33	1.80
32177890--32177956	32	2.1	32	82	0	80	28	17	28	25	1.98
32184279--32184313	18	2.0	18	88	5	54	45	0	0	54	0.99
32185553--32185589	19	2.0	20	89	10	60	64	0	2	32	1.07
32194015--32194057	21	2.0	22	86	4	61	51	9	4	34	1.55
32194938--32194976	20	1.9	19	90	10	60	41	0	7	51	1.31
32195859--32195941	7	11.1	7	76	12	60	16	2	1	79	0.90
32195854--32195905	20	2.6	20	82	8	70	15	5	0	78	0.92
32195848--32195902	28	2.1	25	86	10	74	16	9	0	74	1.06
32195883--32195940	28	2.1	27	87	6	80	13	0	1	84	0.70
32195891--32195939	20	2.4	20	89	3	71	14	0	2	83	0.73
32196072--32196124	27	2.0	26	82	10	63	39	3	0	56	1.17
32211781--32211874	29	3.2	29	93	0	152	26	9	25	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32211905--32211942	20	1.9	20	89	10	60	28	26	10	34	1.90
32216266--32216304	21	1.9	21	94	5	71	30	25	10	33	1.89
32220912--32220965	26	2.1	26	100	0	108	24	3	18	53	1.60
32221521--32221546	6	4.3	6	100	0	52	65	19	15	0	1.27
32224630--32224671	22	1.9	22	100	0	84	23	14	14	47	1.80
32227353--32227632	153	1.8	153	86	6	406	39	16	13	30	1.87
32229543--32229601	29	2.0	29	100	0	118	45	10	13	30	1.76
32238231--32238289	30	2.0	30	100	0	118	40	16	16	25	1.90
32239482--32239551	22	3.5	20	74	16	63	40	0	4	55	1.19
32239530--32239582	22	2.6	19	72	18	52	35	1	5	56	1.34
32239485--32239585	42	2.4	42	80	4	107	40	0	4	53	1.29
32239606--32239656	21	2.4	21	77	6	59	31	0	0	68	0.90
32239464--32239940	163	3.0	160	83	5	590	39	2	2	54	1.31
32239726--32239776	20	2.7	19	79	11	52	45	0	0	54	0.99
32239802--32239963	59	2.8	57	75	20	149	42	2	3	51	1.33
32239785--32240169	141	2.7	140	87	4	538	41	2	4	51	1.33
32239792--32239987	27	7.1	27	68	20	95	42	2	4	51	1.32
32240583--32240611	14	2.0	15	93	6	51	79	0	6	13	0.93
32240692--32240731	15	2.7	14	88	11	62	45	0	0	55	0.99
32240700--32240732	15	2.2	15	100	0	66	42	0	0	57	0.98
32240692--32240822	40	3.1	41	77	9	124	44	2	1	51	1.23
32241089--32241119	16	1.9	16	93	0	53	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32241242--32241281	17	2.3	18	83	12	57	0	10	5	85	0.75
32241248--32241280	14	2.4	14	90	10	50	0	12	0	87	0.53
32241823--32241863	12	3.4	12	81	18	50	2	21	2	73	1.07
32242278--32242311	16	2.2	15	89	5	50	52	2	0	44	1.16
32242336--32242367	16	2.0	16	100	0	64	43	0	6	50	1.27
32242672--32242832	40	4.0	39	75	16	109	49	1	3	45	1.27
32242706--32242801	41	2.3	41	86	8	133	50	1	6	42	1.34
32242763--32242805	16	2.8	15	82	6	50	48	2	4	44	1.36
32242682--32242844	15	11.2	15	67	22	55	49	1	3	45	1.30
32242784--32242844	22	2.6	24	84	7	81	45	1	0	52	1.10
32251347--32251443	1	97.0	1	100	0	194	0	0	0	100	0.00
32257087--32257129	21	2.0	21	86	8	61	44	25	6	23	1.78
32266706--32266746	2	20.5	2	100	0	82	0	48	0	51	1.00
32274130--32274174	23	2.0	23	86	0	63	66	22	6	4	1.33
32276745--32276972	115	2.0	115	80	7	261	41	12	7	39	1.71
32295630--32295657	3	9.3	3	100	0	56	67	0	0	32	0.91
32300618--32300672	21	2.6	21	82	5	67	5	3	72	18	1.18
32311289--32311314	2	13.0	2	100	0	52	0	50	0	50	1.00
32312786--32312827	21	2.0	22	85	4	59	9	11	26	52	1.68
32316077--32316381	106	2.9	106	84	1	387	28	24	19	27	1.98
32320561--32320587	4	6.8	4	100	0	54	51	0	22	25	1.48
32327088--32327120	3	11.0	3	100	0	66	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32327164--32327226	23	2.7	23	74	16	67	52	1	3	42	1.27
32327292--32327406	46	2.5	45	83	6	142	47	2	0	48	1.21
32327262--32327395	23	5.9	22	67	13	74	48	5	0	45	1.30
32327376--32327450	31	2.4	32	84	6	91	44	2	0	53	1.14
32331616--32331694	2	39.0	2	97	2	149	49	0	0	49	1.01
32333672--32333783	33	3.0	38	72	17	108	28	7	0	63	1.27
32333700--32333780	35	2.4	32	82	11	92	27	4	1	66	1.19
32333809--32333858	15	3.7	13	75	24	50	26	2	0	72	0.96
32337578--32337630	2	26.5	2	100	0	106	50	0	49	0	1.00
32337628--32337653	3	8.7	3	100	0	52	65	0	34	0	0.93
32340117--32340162	24	1.9	24	83	16	60	17	8	15	58	1.61
32353837--32353938	52	2.1	47	86	13	138	19	11	12	55	1.67
32356919--32356965	22	2.1	22	84	0	58	42	8	8	40	1.66
32362067--32362102	13	2.8	13	86	0	54	63	0	0	36	0.94
32364317--32364399	43	1.9	44	95	2	150	22	12	12	53	1.71
32364529--32364644	28	4.1	28	84	7	137	29	12	16	42	1.84
32364537--32364688	56	2.7	57	81	10	170	28	13	17	40	1.87
32364638--32364698	27	2.3	27	86	8	81	32	13	16	37	1.87
32365040--32365105	31	2.1	31	88	0	96	42	16	13	27	1.86
32365478--32365523	19	2.4	20	82	10	60	54	0	2	43	1.12
32365918--32365955	20	1.9	20	94	0	67	31	5	18	44	1.72
32366153--32366198	23	2.0	24	91	4	76	13	8	21	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32366415--32366482	30	2.3	30	92	2	111	55	14	7	22	1.63
32367091--32367182	46	2.0	46	100	0	184	41	26	8	23	1.83
32367581--32367721	70	2.0	71	94	1	248	23	22	3	50	1.65
32367706--32367855	27	5.4	26	73	12	104	26	24	16	33	1.96
32367861--32367894	17	2.0	17	88	0	50	38	20	14	26	1.91
32367882--32368171	27	10.7	26	76	13	180	28	20	17	32	1.96
32367878--32368218	29	12.4	27	73	12	148	28	19	18	33	1.96
32367753--32367997	124	2.0	124	95	0	445	28	20	19	32	1.97
32367959--32368023	24	2.7	24	92	0	112	33	18	21	26	1.96
32368017--32368212	56	3.5	55	84	6	225	28	20	16	34	1.94
32368830--32368901	34	2.1	34	89	0	108	59	9	9	20	1.57
32374988--32375063	34	2.2	34	88	6	109	57	7	6	27	1.52
32375001--32375069	34	2.1	34	94	2	122	55	10	5	28	1.56
32375309--32375427	60	2.0	60	85	3	159	32	15	39	11	1.84
32381332--32381401	32	2.2	33	82	7	81	52	12	2	31	1.54
32391532--32391556	5	5.0	5	100	0	50	0	60	20	20	1.37
32393180--32393385	44	4.7	44	84	1	218	37	12	8	40	1.74
32396876--32396913	19	2.0	20	89	5	60	57	5	0	36	1.21
32402273--32402306	16	2.1	16	100	0	68	44	11	0	44	1.40
32404668--32404746	29	2.8	26	84	11	86	64	2	0	32	1.07
32406807--32406870	15	4.5	14	74	20	53	70	0	3	26	1.02
32408614--32408644	6	5.2	6	96	0	53	12	67	0	19	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32416667--32416730	28	2.3	28	100	0	128	15	28	10	45	1.80
32445394--32445654	129	2.0	129	91	0	423	27	31	18	22	1.97
32456382--32456445	25	2.5	26	89	7	103	15	28	17	39	1.90
32456950--32456992	21	2.0	21	90	0	68	25	2	44	27	1.66
32457764--32457850	31	2.7	33	76	7	106	39	11	3	45	1.57
32463291--32463322	2	16.0	2	93	0	55	50	3	0	46	1.17
32471857--32472005	75	2.0	74	93	1	253	32	18	14	34	1.91
32472716--32472788	29	2.5	29	80	8	85	20	28	5	45	1.73
32480151--32480185	8	4.4	8	92	0	52	65	2	0	31	1.07
32482195--32482228	17	2.0	17	94	0	59	55	5	11	26	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103