genome.fa.s5.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  69  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25910610--25910686	10	7.3	10	72	16	57	74	1	3	20	1.06
25910637--25910681	15	3.1	14	82	17	56	77	2	0	20	0.87
25917158--25917203	19	2.3	20	96	3	85	43	30	0	26	1.55
25919778--25919828	17	2.6	21	73	23	56	29	1	0	68	1.00
25919999--25920127	65	2.0	64	100	0	249	43	15	13	26	1.84
25921024--25921059	10	3.7	10	88	7	56	22	0	0	77	0.76
25921028--25921062	17	2.1	17	94	0	61	25	0	0	74	0.82
25921024--25921064	10	4.3	10	87	9	50	26	0	0	73	0.84
25929882--25929967	42	2.0	42	90	0	136	29	11	17	41	1.84
25935398--25935470	31	2.3	31	90	4	110	17	26	10	45	1.82
25940927--25940976	3	17.3	3	79	4	50	26	2	0	72	0.96
25941072--25941123	26	2.1	23	86	10	68	19	0	1	78	0.84
25941094--25941125	15	2.1	15	94	5	55	25	0	0	75	0.81
25941143--25941167	8	3.1	8	100	0	50	24	0	0	76	0.80
25941343--25941386	16	2.7	15	83	13	52	20	2	0	77	0.88
25941336--25941386	24	2.2	23	89	3	75	21	1	0	76	0.88
25941422--25941499	13	5.8	13	82	13	79	21	2	2	73	1.08
25941441--25941499	21	3.0	20	72	22	63	18	3	1	76	1.02
25942387--25942434	2	24.0	2	100	0	96	0	50	0	50	1.00
25943740--25943907	38	4.4	38	82	3	205	42	19	17	20	1.89
25955750--25956119	187	2.0	183	96	2	679	32	19	15	32	1.93
25956106--25956165	16	3.8	16	72	16	61	23	5	1	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25956106--25956168	17	4.1	15	77	20	51	23	4	1	69	1.16
25956296--25956379	8	10.0	8	72	10	51	21	1	2	75	0.99
25956296--25956379	14	5.6	14	69	19	53	21	1	2	75	0.99
25956296--25956334	18	2.2	17	90	4	60	20	0	0	79	0.73
25956296--25956358	8	7.3	9	77	12	62	22	1	1	74	0.99
25956299--25956377	25	3.2	26	79	15	96	21	1	2	74	1.01
25956545--25956578	17	2.0	17	88	0	50	23	0	0	76	0.79
25956618--25956677	7	9.0	7	78	10	54	30	1	1	66	1.11
25958201--25958277	35	2.2	35	82	11	95	14	3	3	77	1.05
25958221--25958275	25	2.2	25	84	9	69	18	1	5	74	1.10
25958776--25958888	55	2.1	55	83	3	138	38	14	13	34	1.85
25958802--25959071	27	9.7	27	73	9	157	42	14	9	33	1.77
25958797--25958925	59	2.3	55	78	5	141	41	15	12	31	1.84
25958802--25959068	55	4.8	55	76	9	166	42	14	9	34	1.77
25962315--25962452	57	2.5	57	83	5	169	38	2	42	15	1.62
25964646--25964682	11	3.4	11	84	0	56	78	0	10	10	0.97
25965946--25965985	17	2.3	17	86	4	53	80	0	15	5	0.88
25965942--25965985	18	2.5	18	85	3	63	79	0	13	6	0.92
25966131--25966168	20	1.9	20	84	10	51	65	0	2	31	1.06
25966115--25966166	26	2.0	26	88	7	79	67	0	3	28	1.08
25968213--25968249	17	2.2	16	90	4	56	16	10	21	51	1.74
25969128--25969166	15	2.6	16	84	12	55	48	23	0	28	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25969162--25969215	24	2.2	24	93	0	90	62	7	12	16	1.51
25971323--25971462	74	1.9	74	89	0	217	41	5	7	46	1.53
25974203--25974314	56	2.0	56	91	0	179	45	12	24	17	1.83
25979300--25979325	13	2.0	13	100	0	52	7	15	38	38	1.76
25987213--25987250	14	2.8	14	84	4	51	52	2	0	44	1.14
25987287--25987340	23	2.3	23	84	6	65	9	9	0	81	0.88
25987296--25987343	12	4.2	11	86	7	60	6	10	0	83	0.81
25987311--25987344	11	3.0	11	91	4	50	2	14	0	82	0.79
25989525--25989555	16	1.9	16	100	0	62	51	0	29	19	1.47
25989729--25989794	27	2.4	27	87	7	89	53	1	1	43	1.19
25989835--25989896	30	2.1	30	88	11	94	48	1	3	46	1.28
25989893--25989972	41	2.0	39	88	9	117	38	0	0	61	0.96
25989982--25990045	5	12.8	5	80	9	69	21	1	0	75	0.88
25989993--25990064	31	2.3	31	88	6	110	29	2	0	66	1.05
25996007--25996059	2	27.0	2	92	3	90	49	0	1	49	1.12
26002298--26002381	42	2.0	42	88	0	123	19	9	13	58	1.62
26002554--26002615	29	2.3	26	83	13	72	51	3	1	43	1.27
26016608--26016686	26	3.0	26	98	1	149	30	16	18	34	1.94
26025448--26025640	99	1.9	99	92	0	323	21	18	32	27	1.96
26025716--26025778	26	2.4	26	94	0	108	25	3	39	31	1.71
26033828--26033928	22	4.6	22	73	2	78	45	16	9	27	1.79
26033785--26033928	66	2.2	67	82	6	168	42	18	11	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26034426--26034472	2	23.5	2	95	0	85	51	0	0	48	1.00
26034488--26034529	2	21.0	2	100	0	84	50	0	0	50	1.00
26035494--26035619	54	2.3	54	95	0	225	46	18	8	26	1.78
26060346--26060390	19	2.4	19	84	0	54	20	17	22	40	1.92
26060716--26060764	2	24.5	2	100	0	98	51	48	0	0	1.00
26067716--26067764	20	2.8	16	82	14	53	28	0	10	61	1.29
26069469--26069518	2	25.5	2	95	4	93	48	0	0	52	1.00
26069518--26069563	2	23.0	2	95	0	83	0	2	47	50	1.13
26070747--26070798	21	2.5	21	93	0	95	30	36	3	28	1.75
26077235--26077310	38	2.0	39	84	2	100	30	5	15	48	1.67
26078534--26079216	249	2.7	250	87	1	940	49	5	9	35	1.58
26081115--26081151	18	2.1	19	85	10	51	59	5	8	27	1.48
26080825--26082118	248	5.2	249	82	5	1449	49	6	10	33	1.62
26113414--26113468	28	1.9	29	85	3	76	52	5	3	38	1.42
26123619--26123665	14	2.9	17	69	18	55	44	4	19	31	1.70
26132008--26132035	2	14.0	2	100	0	56	50	0	0	50	1.00
26133761--26133803	17	2.7	15	82	10	50	25	0	11	62	1.29
26138445--26138483	21	1.9	19	90	10	60	17	2	10	69	1.28
26139798--26139839	15	2.7	16	82	14	52	26	0	9	64	1.24
26139848--26139883	18	1.9	19	94	5	65	25	0	8	66	1.19
26149353--26149400	3	16.3	3	95	4	89	31	0	0	68	0.90
26149856--26149882	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26150059--26150110	27	1.9	27	84	7	70	46	5	3	44	1.45
26150476--26150509	17	2.0	17	88	0	50	52	11	2	32	1.53
26157364--26157392	12	2.5	12	94	5	51	27	0	0	72	0.85
26157663--26157692	16	1.9	16	93	6	53	23	0	6	70	1.11
26158804--26158828	4	6.2	4	100	0	50	76	0	24	0	0.80
26167489--26167618	44	3.0	44	95	1	235	20	23	12	44	1.84
26177343--26177389	24	2.0	24	95	0	85	34	0	36	29	1.58
26177694--26177766	36	2.1	35	84	2	92	30	1	5	63	1.26
26183764--26183796	16	2.1	16	88	5	50	45	0	0	54	0.99
26183847--26183908	32	2.0	31	84	9	81	45	1	4	48	1.33
26201653--26201688	18	2.0	18	88	0	54	55	8	22	13	1.65
26205034--26205073	20	2.0	20	95	0	71	52	15	12	20	1.74
26206845--26206895	26	1.9	27	84	4	68	52	1	9	35	1.46
26207103--26207160	28	2.1	28	84	12	75	27	3	0	68	1.05
26209931--26210044	33	3.3	33	70	13	102	41	16	16	25	1.89
26211465--26211493	9	3.0	10	90	10	51	51	6	0	41	1.28
26213228--26213277	18	2.7	18	81	3	55	54	0	4	42	1.19
26213292--26213346	26	2.2	26	96	3	103	56	0	7	36	1.27
26213790--26213839	19	2.6	19	87	3	73	56	0	18	26	1.42
26227230--26227760	213	2.5	213	76	7	522	32	9	7	50	1.62
26230061--26230120	22	2.7	23	74	7	61	45	10	1	43	1.47
26230039--26230319	35	8.1	35	78	5	212	42	11	6	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26230014--26230296	141	2.0	141	82	5	340	42	10	6	39	1.66
26232029--26232948	213	4.3	212	82	4	1004	33	9	8	48	1.67
26232029--26232948	432	2.1	427	81	3	1069	33	9	8	48	1.67
26233312--26233365	21	2.6	20	88	8	81	81	1	16	0	0.78
26233312--26233371	20	3.0	20	78	11	68	80	1	18	0	0.80
26233313--26233365	22	2.4	23	87	9	76	81	1	16	0	0.79
26233523--26233552	12	2.4	12	94	5	51	86	0	13	0	0.57
26233500--26233552	27	2.0	26	81	3	61	79	0	16	3	0.88
26235862--26236064	101	2.0	101	99	0	397	40	19	16	23	1.91
26240576--26240601	12	2.2	12	100	0	52	42	0	50	7	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103