genome.fa.s5.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  51  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19152288--19152328	20	2.0	20	95	0	73	41	0	14	43	1.45
19155236--19155483	121	2.0	121	80	6	270	26	11	19	42	1.85
19163157--19163188	2	16.0	2	100	0	64	50	0	0	50	1.00
19176528--19176593	26	2.6	26	80	7	73	43	1	6	48	1.36
19176603--19176642	8	5.0	8	84	0	53	2	17	0	80	0.83
19188557--19188581	13	1.9	13	100	0	50	24	8	20	48	1.76
19199606--19199637	11	2.9	11	95	0	55	68	15	0	15	1.21
19199725--19199806	21	3.8	22	84	6	96	62	15	6	15	1.51
19199742--19199798	11	5.1	11	76	4	60	63	17	5	14	1.48
19199816--19199893	26	3.0	26	94	0	129	50	16	7	25	1.72
19199868--19200306	146	3.0	146	89	0	646	38	11	23	26	1.89
19201452--19201659	54	3.8	53	92	2	335	19	14	44	21	1.87
19203683--19203761	26	3.0	26	86	0	113	30	20	12	36	1.90
19205106--19205136	15	2.1	15	93	0	53	16	12	0	70	1.16
19206849--19206883	2	18.0	2	88	5	54	45	0	0	54	0.99
19213201--19213238	20	1.9	19	89	5	58	42	15	0	42	1.47
19218675--19218714	21	1.9	21	84	0	53	32	17	12	37	1.87
19221618--19221655	20	1.9	19	89	5	58	42	0	15	42	1.47
19222942--19222974	2	16.5	2	100	0	66	48	0	0	51	1.00
19227862--19227958	39	2.5	39	83	5	106	22	14	39	23	1.91
19236567--19236605	19	2.1	19	85	0	51	56	0	5	38	1.22
19237707--19237740	17	1.9	17	94	5	59	47	0	44	8	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19237708--19237746	17	2.2	18	86	4	53	51	0	43	5	1.24
19238594--19238804	108	2.0	108	91	8	344	37	10	13	38	1.79
19245191--19245225	15	2.4	14	90	4	52	0	34	0	65	0.93
19245191--19245241	24	2.1	25	81	3	59	1	33	0	64	1.05
19247285--19247387	19	5.3	19	68	9	82	23	42	14	19	1.88
19247288--19247387	38	2.6	38	83	3	128	24	43	14	19	1.87
19249435--19249511	36	2.2	36	83	2	93	23	12	33	29	1.92
19249448--19249535	36	2.5	36	81	1	88	21	13	36	28	1.92
19249459--19249545	36	2.4	36	75	7	86	24	13	35	26	1.93
19250640--19250667	2	14.0	2	100	0	56	50	0	0	50	1.00
19252485--19252518	2	17.5	2	93	6	61	50	0	0	50	1.00
19262561--19262620	25	2.4	25	94	0	102	25	33	18	23	1.97
19278810--19278884	37	2.0	37	100	0	150	24	18	13	44	1.85
19284833--19284892	20	3.0	20	90	0	84	36	10	16	36	1.82
19285156--19285192	15	2.3	17	86	9	51	67	8	2	21	1.29
19287257--19287295	18	2.2	18	90	0	60	33	0	15	51	1.44
19287250--19287300	14	3.7	14	84	2	59	35	0	13	50	1.42
19294374--19294483	34	3.0	36	67	17	91	28	37	12	21	1.90
19294346--19294483	73	1.9	73	95	0	249	28	35	13	22	1.92
19294356--19294470	34	3.2	34	69	15	106	27	34	13	23	1.93
19295090--19295128	20	2.0	20	90	10	62	71	2	20	5	1.17
19310893--19310927	11	3.3	11	88	8	54	65	11	22	0	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19313406--19313573	63	2.7	62	85	7	234	23	16	33	26	1.96
19320468--19320493	2	13.0	2	100	0	52	50	0	0	50	1.00
19321469--19321574	38	2.7	40	79	5	135	23	39	15	21	1.91
19330887--19330922	18	1.9	19	88	5	56	63	8	0	27	1.23
19331038--19331106	30	2.2	30	80	14	70	34	13	1	50	1.50
19337370--19337398	15	1.9	15	100	0	58	34	20	24	20	1.97
19342208--19342246	2	19.5	2	100	0	78	48	0	0	51	1.00
19342598--19342625	2	14.0	2	100	0	56	50	0	0	50	1.00
19343759--19343808	22	2.2	24	79	13	61	74	2	10	14	1.16
19343757--19343800	15	2.9	15	86	10	54	75	2	9	13	1.14
19343755--19343819	21	3.3	20	69	22	57	70	1	9	18	1.21
19343739--19343819	38	2.2	38	84	8	112	69	2	9	18	1.28
19351119--19351152	12	2.8	12	86	13	52	73	0	26	0	0.83
19351182--19351323	54	2.5	57	81	6	164	58	4	34	2	1.31
19351353--19351394	9	4.6	9	77	16	50	73	0	26	0	0.83
19351933--19352234	60	5.0	60	86	4	419	28	20	31	20	1.97
19351932--19352234	122	2.5	122	86	4	425	28	20	31	20	1.97
19360159--19360220	29	2.1	28	91	5	97	38	0	22	38	1.54
19361302--19361330	9	3.0	10	90	10	51	41	0	6	51	1.28
19366575--19366624	24	2.1	23	81	3	55	18	22	36	24	1.95
19368246--19368318	35	2.1	35	86	0	101	30	31	9	28	1.89
19369047--19369088	19	2.2	19	95	0	75	40	9	33	16	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19369482--19369511	11	2.7	11	100	0	60	40	0	0	60	0.97
19369907--19369969	18	3.5	18	70	21	51	31	7	4	55	1.50
19375768--19375811	23	1.9	23	81	9	54	45	0	4	50	1.22
19375672--19375972	154	2.0	154	93	1	523	42	5	5	46	1.50
19377564--19377588	12	2.1	12	100	0	50	64	0	0	36	0.94
19378332--19378405	35	2.1	35	95	2	132	48	10	9	31	1.70
19378507--19378535	2	14.5	2	100	0	58	51	0	0	48	1.00
19388827--19388932	38	2.7	40	77	2	126	23	15	37	23	1.93
19389196--19389242	22	2.2	22	92	3	78	23	25	23	27	2.00
19397064--19397090	13	2.1	13	100	0	54	25	14	37	22	1.93
19402613--19402788	73	2.4	73	91	0	271	26	24	23	26	2.00
19411734--19411775	9	4.8	9	82	5	50	0	30	0	69	0.89
19411940--19411999	14	4.2	14	75	12	59	8	21	0	70	1.14
19412461--19412485	10	2.5	10	100	0	50	0	32	8	60	1.26
19413124--19413288	42	3.9	42	90	1	233	24	33	21	20	1.97
19414476--19414705	92	2.5	92	87	1	309	36	26	12	23	1.90
19416441--19416469	14	2.0	15	93	6	51	20	20	10	48	1.79
19416804--19416831	14	2.0	14	100	0	56	28	0	7	64	1.20
19419726--19419766	21	2.0	20	86	13	57	19	2	29	48	1.61
19429103--19429186	26	3.2	26	98	1	159	29	19	17	33	1.95
19432541--19432707	60	2.8	60	79	1	192	32	19	21	26	1.97
19433063--19433151	43	2.1	43	89	0	133	21	35	19	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19437852--19437893	19	2.2	19	83	8	50	45	7	33	14	1.72
19439217--19439262	21	2.1	22	92	4	76	23	30	4	41	1.74
19439282--19439307	3	8.7	3	100	0	52	30	0	0	69	0.89
19440009--19440046	19	2.0	19	94	0	67	47	13	10	28	1.76
19440902--19440956	21	2.6	21	85	5	76	29	16	20	34	1.94
19442060--19442142	43	1.9	43	80	4	96	48	7	19	25	1.74
19442156--19442309	72	2.1	72	82	0	182	44	13	20	21	1.85
19444786--19444816	2	15.5	2	93	0	53	54	0	0	45	0.99
19445801--19445939	31	4.5	30	72	9	111	19	20	5	55	1.61
19445824--19445938	31	3.8	30	81	9	135	19	18	3	59	1.52
19456715--19456817	38	2.6	40	84	6	131	20	15	40	23	1.90
19461620--19461764	35	4.3	32	74	15	114	36	26	13	23	1.92
19461579--19461764	67	2.8	67	85	7	227	34	25	13	25	1.94
19465841--19465882	20	2.2	19	84	16	52	30	2	26	40	1.69
19465877--19465996	49	2.4	49	88	2	170	26	17	31	24	1.97
19474836--19474961	42	3.0	42	84	4	173	22	23	31	23	1.98
19480750--19480825	29	2.7	28	81	4	89	42	10	13	34	1.78
19488637--19488736	36	2.6	40	78	15	120	21	39	20	20	1.93
19499588--19499624	17	2.2	17	90	0	56	32	13	18	35	1.90
19499686--19499782	2	48.5	2	90	4	133	49	4	0	45	1.21
19499809--19499940	42	3.1	42	86	5	185	26	34	15	22	1.95
19504066--19504108	2	21.5	2	100	0	86	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19506828--19506885	23	2.5	23	86	5	73	29	15	36	18	1.92
19509716--19509818	38	2.7	40	87	4	140	22	36	16	24	1.94
19509936--19509974	2	19.5	2	94	0	69	48	2	0	48	1.15
19513686--19513815	43	3.0	43	78	6	138	26	16	33	24	1.96
19513846--19513888	20	2.2	20	95	0	77	27	4	37	30	1.77
19513899--19513945	2	23.5	2	86	0	67	48	2	2	46	1.25
19513891--19513937	10	4.7	10	86	0	58	46	2	4	46	1.34
19513902--19513951	16	3.1	16	85	0	64	50	2	4	44	1.32
19521183--19521224	16	2.6	16	96	0	75	23	33	11	30	1.91
19522893--19522955	20	3.2	20	90	2	101	30	41	3	25	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103