genome.fa.s5.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  80  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29961126--29961296	92	1.8	92	83	5	227	42	11	7	38	1.69
29962359--29962547	35	5.4	35	82	3	195	44	12	6	37	1.67
29962356--29962554	70	2.8	69	81	4	231	45	12	6	36	1.66
29965049--29965105	17	3.4	17	68	18	55	42	5	0	50	1.25
29975401--29975495	24	3.7	24	73	14	75	32	2	1	64	1.12
29975445--29975515	28	2.5	28	76	23	69	29	1	0	69	0.98
29980174--29980199	12	2.2	12	100	0	52	34	7	0	57	1.27
29983775--29983839	35	1.9	34	93	6	114	18	33	21	26	1.96
29983895--29983945	24	2.2	24	89	6	79	78	0	19	1	0.85
29983900--29983953	24	2.2	24	87	6	74	77	0	20	1	0.86
29984038--29984107	27	2.7	26	81	16	90	80	2	15	1	0.91
29984032--29984074	22	2.0	22	95	0	77	83	2	13	0	0.74
29984038--29984117	25	3.0	27	78	14	94	77	2	17	2	0.99
29996968--29997013	6	8.2	6	85	9	53	8	15	2	73	1.16
29997414--29997482	32	2.2	32	89	0	102	7	8	13	71	1.31
30006039--30006837	266	3.0	266	99	0	1562	32	18	18	30	1.95
30011748--30011804	28	2.1	28	80	9	64	52	3	8	35	1.50
30012146--30012173	8	3.5	8	100	0	56	89	0	10	0	0.49
30012180--30012270	37	2.5	37	77	13	91	56	0	3	40	1.16
30012279--30012324	19	2.5	19	86	10	60	47	0	0	52	1.00
30015240--30015324	18	4.7	18	69	13	59	41	3	49	5	1.44
30020144--30020192	25	2.0	25	95	0	89	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30020127--30020187	32	1.9	31	83	9	79	42	0	1	55	1.09
30021040--30021201	54	3.0	54	98	0	306	31	25	3	38	1.74
30024888--30025115	119	1.9	121	88	1	343	35	8	21	33	1.84
30030744--30030769	2	13.0	2	100	0	52	50	0	0	50	1.00
30032082--30032106	7	3.6	7	100	0	50	0	0	56	44	0.99
30034408--30034497	33	2.7	33	82	0	108	38	12	42	6	1.69
30042800--30042851	26	2.0	27	84	3	70	50	1	17	30	1.57
30043463--30043508	17	2.8	17	75	18	53	67	0	0	32	0.91
30043463--30043507	18	2.8	17	77	16	51	68	0	0	31	0.89
30043463--30043555	31	3.0	31	88	1	123	66	2	1	30	1.10
30043460--30043600	69	2.1	69	80	6	153	66	2	1	29	1.12
30043758--30043801	15	2.9	15	89	0	70	34	22	6	36	1.81
30051589--30051664	38	2.0	38	100	0	152	36	18	21	23	1.95
30054994--30055035	11	3.9	11	78	15	52	0	0	73	26	0.83
30054996--30055035	20	2.0	21	90	9	66	0	0	75	25	0.81
30062338--30062384	24	2.0	24	100	0	94	29	8	8	53	1.61
30065787--30065816	11	2.7	11	94	0	51	40	3	40	16	1.65
30067170--30067208	5	7.2	5	83	16	51	28	0	0	71	0.86
30067096--30067196	53	1.9	53	83	4	132	33	5	3	56	1.42
30067170--30067208	17	2.4	16	84	16	53	28	0	0	71	0.86
30067170--30067208	11	3.6	10	81	18	51	28	0	0	71	0.86
30074032--30074082	2	25.5	2	95	0	93	50	0	0	47	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30075536--30075591	15	3.7	15	72	9	51	12	33	5	48	1.64
30075527--30075594	30	2.3	30	92	0	109	13	32	4	50	1.61
30078802--30078934	65	2.0	65	94	0	230	34	19	9	36	1.83
30081707--30082004	92	3.2	91	88	1	434	27	25	26	20	1.99
30081854--30082022	45	3.7	45	70	6	142	27	26	28	17	1.98
30081735--30081966	47	5.0	48	62	15	119	29	24	26	19	1.99
30082602--30082636	2	18.0	2	94	5	63	51	0	0	48	1.00
30082755--30083103	174	2.0	172	92	2	574	37	4	6	51	1.47
30084100--30084318	108	2.0	108	87	1	314	19	18	12	49	1.78
30084431--30084481	15	3.4	15	77	0	57	5	29	3	60	1.38
30084597--30084662	30	2.2	31	83	2	80	6	30	4	59	1.42
30084628--30084710	43	2.0	42	87	2	121	6	26	6	61	1.43
30084693--30084724	15	2.2	14	94	5	55	6	31	0	62	1.20
30084972--30085037	14	4.6	14	74	10	53	9	31	1	57	1.39
30085163--30085242	31	2.7	29	79	11	74	6	26	3	63	1.35
30085801--30085843	22	2.0	22	95	0	77	60	9	20	9	1.55
30086350--30086449	37	2.7	37	78	9	114	30	38	14	18	1.89
30092769--30092805	19	1.9	19	89	10	58	45	5	2	45	1.40
30095762--30095801	16	2.4	16	87	4	53	55	0	2	42	1.13
30100798--30100832	2	17.0	2	94	5	61	48	0	2	48	1.16
30100800--30100832	17	1.9	17	100	0	66	48	0	3	48	1.17
30100856--30100893	2	19.5	2	94	5	69	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30100783--30100904	65	2.0	58	91	8	158	47	4	3	40	1.41
30102383--30102436	16	3.4	16	78	12	58	59	0	1	38	1.08
30103810--30103857	2	24.0	2	100	0	96	50	0	0	50	1.00
30103857--30103892	2	18.0	2	100	0	72	0	0	50	50	1.00
30107342--30107371	2	15.0	2	92	0	51	50	0	3	46	1.18
30107688--30107759	29	2.5	28	78	10	74	34	0	2	62	1.10
30116541--30116576	2	18.0	2	88	0	54	50	5	0	44	1.25
30116541--30116576	12	3.0	12	95	0	63	50	5	0	44	1.25
30127024--30127099	41	2.0	41	84	10	106	46	6	0	47	1.28
30131333--30131381	20	2.5	20	79	0	62	63	0	14	22	1.30
30131330--30131383	18	2.7	20	80	11	58	61	0	14	24	1.34
30132265--30132343	40	2.0	40	89	0	122	27	25	16	30	1.97
30138321--30138351	12	2.5	13	94	5	55	29	3	0	67	1.06
30138471--30138531	16	4.5	14	72	27	60	27	3	0	68	1.05
30138471--30138534	14	4.7	14	73	7	51	26	3	0	70	1.02
30138744--30138796	27	1.9	28	84	3	72	20	7	0	71	1.10
30139817--30139891	25	3.0	25	94	0	123	17	37	6	38	1.76
30140202--30140249	26	1.9	24	87	8	69	14	8	0	77	0.99
30141054--30141112	8	7.2	8	72	16	50	47	0	0	52	1.00
30142530--30142591	16	3.5	16	75	23	61	48	30	6	14	1.69
30142729--30142791	23	2.7	24	85	7	85	41	7	41	9	1.67
30144026--30144059	15	2.3	15	90	10	52	58	2	0	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30145898--30145936	21	2.0	21	85	10	55	43	2	5	48	1.38
30146815--30146863	24	2.0	25	88	4	73	38	0	0	61	0.96
30147217--30147250	17	2.0	17	88	11	52	58	2	0	38	1.13
30147654--30147686	15	2.2	15	94	0	57	54	3	0	42	1.15
30148398--30148451	27	2.0	27	88	0	81	37	5	7	50	1.54
30149496--30149562	18	3.8	18	68	20	52	37	4	0	58	1.19
30153332--30153381	2	26.0	2	92	8	86	52	0	48	0	1.00
30159159--30159389	116	2.0	116	88	2	347	37	12	34	15	1.86
30171605--30171656	10	5.1	10	75	13	52	51	3	0	44	1.19
30173406--30173600	26	7.4	26	68	6	106	25	23	33	18	1.97
30173458--30173587	53	2.5	53	75	5	129	23	22	36	17	1.95
30173670--30173737	26	2.7	26	88	2	93	25	27	33	13	1.93
30173670--30173779	27	4.2	26	79	4	89	24	24	33	17	1.96
30173800--30173869	26	2.7	26	84	6	88	35	25	24	14	1.93
30173819--30173896	26	2.9	27	80	5	86	41	29	21	7	1.81
30173872--30173908	16	2.2	18	85	9	51	56	27	13	2	1.50
30182092--30182126	13	2.6	14	86	4	54	54	0	0	45	0.99
30183142--30183190	19	2.6	18	78	15	55	63	4	0	32	1.13
30185987--30186033	22	2.1	23	88	4	69	48	2	6	42	1.40
30186097--30186129	9	3.7	9	92	8	50	84	0	0	15	0.61
30193942--30194011	34	2.1	34	97	0	131	18	25	14	41	1.88
30202846--30202881	2	18.0	2	100	0	72	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30206612--30206705	2	46.0	2	78	12	75	47	1	8	41	1.41
30208942--30209098	78	1.9	80	81	10	185	43	5	12	39	1.64
30209344--30209379	13	2.8	13	91	4	56	52	0	0	47	1.00
30209312--30209379	23	3.2	23	74	11	58	42	0	0	57	0.98
30210919--30210946	2	14.0	2	100	0	56	50	0	0	50	1.00
30211700--30211724	7	3.6	7	100	0	50	88	12	0	0	0.53
30212764--30212811	2	24.0	2	100	0	96	50	0	0	50	1.00
30214997--30215029	16	2.0	17	88	5	50	45	0	0	54	0.99
30230753--30230889	67	2.0	67	100	0	274	26	19	18	35	1.95
30235859--30235903	21	2.2	20	84	7	56	44	4	0	51	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103