genome.fa.s5.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  76  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28502879--28502944	10	6.6	10	91	0	96	50	6	0	43	1.27
28503551--28503615	4	16.2	4	90	0	94	49	6	0	44	1.27
28503551--28503615	6	10.8	6	93	0	94	49	6	0	44	1.27
28503551--28503615	10	6.5	10	90	0	94	49	6	0	44	1.27
28520530--28520576	24	1.9	25	83	12	62	46	4	8	40	1.54
28527009--28527053	22	2.0	23	86	4	65	33	11	20	35	1.88
28527049--28527108	28	2.1	29	81	3	68	41	6	6	45	1.57
28527069--28527218	55	2.7	55	81	4	176	45	12	6	36	1.66
28527073--28527226	27	5.6	27	66	9	69	44	12	5	37	1.66
28527421--28527496	25	3.1	26	71	19	65	59	2	0	38	1.12
28527423--28527501	23	3.3	23	81	10	88	55	2	0	41	1.13
28527355--28527636	136	2.1	136	91	2	460	57	3	6	32	1.40
28527591--28527674	11	7.6	11	70	20	52	57	2	0	40	1.12
28527640--28527667	13	2.2	13	100	0	56	53	0	0	46	1.00
28531788--28531947	85	1.9	87	85	6	227	30	15	15	38	1.88
28532100--28532282	95	1.9	94	82	7	228	39	7	6	46	1.56
28543645--28544318	140	4.8	140	81	5	761	23	25	12	38	1.90
28547597--28547985	24	16.8	24	68	11	152	22	17	21	37	1.94
28547612--28547827	45	4.8	45	87	0	270	22	20	21	34	1.97
28547754--28548035	69	4.0	69	76	10	295	23	16	20	39	1.92
28547801--28547984	48	3.9	48	82	7	232	22	15	21	40	1.90
28549817--28549869	23	2.4	21	71	6	52	58	1	9	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28550043--28550081	20	2.0	20	84	0	51	53	0	0	46	1.00
28552650--28552683	2	17.5	2	87	6	52	47	2	0	50	1.16
28553741--28553777	11	3.4	11	92	0	56	43	13	13	29	1.82
28554235--28554315	35	2.3	35	83	10	94	64	8	0	27	1.23
28569166--28569194	12	2.3	13	94	5	51	41	6	17	34	1.76
28574814--28574929	40	2.9	40	85	0	151	57	17	0	24	1.45
28574865--28574929	20	3.1	21	73	24	66	60	18	0	21	1.37
28574812--28574917	20	5.3	20	67	20	78	57	16	0	25	1.45
28577645--28577682	20	1.9	20	100	0	76	44	21	5	28	1.73
28581230--28581293	28	2.2	29	83	2	76	46	20	4	28	1.70
28581842--28582001	29	5.7	28	78	10	157	39	11	11	37	1.78
28581862--28582028	83	2.0	83	82	8	205	41	9	11	37	1.74
28581860--28581986	54	2.3	57	82	5	152	43	11	11	33	1.77
28583501--28583541	18	2.4	17	87	4	55	78	0	12	9	0.98
28584586--28584891	43	7.1	43	80	8	291	31	14	13	40	1.85
28584586--28584897	86	3.6	85	82	5	333	31	14	13	41	1.84
28584669--28584926	129	2.0	131	85	4	353	30	14	14	40	1.86
28585276--28585325	22	2.3	22	79	6	57	70	0	20	10	1.16
28587622--28587689	24	2.8	24	82	8	75	42	1	0	55	1.08
28587613--28587689	16	5.1	15	73	16	61	44	1	0	54	1.08
28587641--28587710	8	9.4	8	76	14	53	37	2	1	58	1.22
28596074--28596112	15	2.5	16	83	8	53	76	5	0	17	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28604796--28604821	5	5.2	5	100	0	52	42	38	19	0	1.51
28605198--28605272	29	2.6	29	78	2	89	36	1	4	58	1.25
28605377--28605552	88	2.0	87	98	1	343	36	12	9	40	1.75
28614631--28614673	15	2.7	16	82	13	61	2	18	0	79	0.85
28624823--28624906	26	3.2	26	63	6	69	38	9	10	41	1.73
28624805--28624912	54	2.0	54	100	0	216	37	9	11	42	1.73
28626327--28626356	2	15.0	2	100	0	60	50	0	0	50	1.00
28626589--28626650	26	2.4	26	83	5	72	38	1	1	58	1.18
28628792--28628833	20	2.1	20	86	8	59	7	28	0	64	1.20
28643907--28643950	15	2.9	15	86	0	52	31	29	6	31	1.84
28643912--28643957	15	3.1	15	90	0	65	36	30	2	30	1.70
28647414--28647458	23	2.0	23	86	0	63	40	20	15	24	1.91
28647775--28647813	18	2.2	18	85	0	51	41	17	7	33	1.79
28651971--28652001	12	2.5	13	94	5	55	64	0	0	35	0.94
28652301--28652345	13	3.4	13	81	3	54	0	17	2	80	0.82
28652439--28652471	15	2.3	15	89	5	50	81	0	18	0	0.68
28652444--28652490	21	2.1	23	85	14	64	80	2	14	2	0.89
28652440--28652491	28	2.0	28	85	11	74	80	1	15	1	0.88
28658838--28658863	3	8.7	3	100	0	52	0	34	0	65	0.93
28665140--28665281	58	2.5	58	82	3	162	46	8	26	18	1.77
28665167--28665289	29	4.2	29	87	0	165	47	8	26	17	1.76
28666941--28666981	20	2.0	20	90	0	64	39	0	2	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28666946--28667021	20	3.9	20	67	27	56	38	1	2	57	1.21
28682686--28682740	25	2.1	27	83	6	69	36	1	16	45	1.58
28688498--28688548	15	3.3	15	77	22	61	56	1	0	41	1.10
28688500--28688564	31	2.1	30	86	8	87	58	1	1	38	1.17
28693353--28693381	4	7.2	4	100	0	58	24	0	24	51	1.48
28693537--28693706	89	1.9	89	86	1	241	36	7	19	36	1.80
28699369--28699433	33	2.0	33	84	6	87	38	13	4	43	1.65
28699502--28699584	30	2.8	30	80	7	96	53	6	4	36	1.47
28700525--28700616	23	3.6	26	74	14	84	43	0	1	55	1.07
28700718--28700865	22	6.5	22	69	17	97	41	2	3	53	1.29
28700717--28700792	27	3.0	26	85	11	97	40	2	2	53	1.28
28700754--28700854	42	2.4	42	77	12	102	40	2	4	51	1.39
28700530--28700958	200	2.1	204	84	5	541	40	2	3	53	1.32
28700730--28701124	156	2.6	147	79	11	360	38	3	3	54	1.34
28700804--28701380	260	2.2	259	81	8	658	40	2	3	53	1.33
28700914--28701454	149	3.6	146	75	11	442	39	2	2	54	1.30
28700995--28701230	107	2.2	107	81	6	260	38	2	3	55	1.30
28701349--28701426	20	3.9	19	72	21	63	42	2	0	55	1.13
28700914--28701411	255	2.0	253	80	8	564	40	2	3	53	1.31
28701064--28701543	149	3.2	148	84	8	593	40	2	2	54	1.29
28705516--28705541	7	3.7	7	100	0	52	26	11	15	46	1.80
28709993--28710067	37	2.0	37	97	0	141	30	13	14	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28722909--28722983	2	38.0	2	93	2	125	52	0	0	46	1.00
28731878--28731907	15	2.0	15	100	0	60	86	0	0	13	0.57
28731878--28731907	8	3.9	8	91	8	53	86	0	0	13	0.57
28737799--28737911	29	3.8	30	86	5	142	35	11	9	43	1.74
28737792--28738043	29	9.2	29	73	17	141	35	10	11	42	1.76
28737799--28737911	59	1.9	59	83	7	149	35	11	9	43	1.74
28737840--28738043	79	2.5	81	84	7	290	33	11	13	42	1.79
28741148--28741208	30	2.0	30	93	6	106	32	18	24	24	1.97
28748573--28748605	15	2.2	16	89	10	52	66	0	0	33	0.92
28748571--28748612	18	2.4	17	81	14	50	66	0	0	33	0.92
28749666--28749707	16	2.6	16	78	17	50	76	0	0	23	0.79
28749660--28749711	17	3.2	16	77	17	54	76	0	0	23	0.78
28749880--28749912	13	2.5	13	95	0	57	63	3	6	27	1.32
28753014--28753468	228	2.0	227	98	0	865	38	15	25	20	1.92
28760522--28761067	59	9.1	59	85	6	675	32	11	19	36	1.88
28760524--28761067	121	4.5	120	86	3	693	31	11	19	36	1.88
28760526--28761063	240	2.2	243	89	2	816	31	11	20	36	1.88
28762272--28762314	22	2.0	21	86	4	59	62	2	0	34	1.08
28762382--28762416	3	12.0	3	87	6	54	68	2	0	28	1.04
28764455--28764492	20	1.9	20	94	0	67	7	0	10	81	0.87
28765317--28765369	26	1.9	28	85	11	74	49	5	5	39	1.50
28765641--28765758	59	2.0	60	86	1	166	40	5	16	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28765813--28765854	2	23.0	2	81	18	56	52	0	0	47	1.00
28765817--28765859	15	2.9	15	93	3	70	55	0	0	44	0.99
28765813--28765855	13	3.4	13	84	15	63	53	0	0	46	1.00
28767766--28767808	15	2.7	15	89	7	59	72	0	2	25	0.97
28768986--28769016	2	15.5	2	93	0	53	54	0	0	45	0.99
28779433--28779733	62	4.9	62	90	4	475	31	11	20	35	1.89
28781135--28781173	7	5.4	7	96	3	69	69	2	0	28	1.02
28789500--28789531	2	16.5	2	93	6	57	50	0	0	50	1.00
28791549--28791584	11	3.4	11	88	7	56	0	61	0	38	0.96
28806612--28806643	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103