Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  103  of  103  ( 12320 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39137951--39137994
2
22.0
2
100
0
88
50
0
0
50
1.00
39164996--39165063
20
3.2
20
81
6
64
48
17
1
32
1.56
39166499--39166553
16
3.2
16
79
7
56
20
3
3
72
1.15
39166701--39166743
15
2.9
15
80
13
54
79
2
18
0
0.85
39167494--39167561
34
1.9
36
82
11
88
72
2
20
4
1.16
39168843--39168962
53
2.2
54
81
12
158
54
1
0
43
1.16
39169394--39169461
20
3.2
20
81
6
64
48
17
1
32
1.56
39170141--39170242
1
102.0
1
98
0
195
99
0
0
0
0.08
39171785--39171835
12
4.2
12
80
7
59
78
1
19
0
0.85
39175105--39175144
11
3.8
10
83
9
53
0
10
2
87
0.63
39175107--39175137
14
2.3
13
94
5
53
0
6
3
90
0.55
39175105--39175144
21
1.9
21
89
0
62
0
10
2
87
0.63
39176015--39176059
22
2.0
22
91
0
72
31
8
24
35
1.86
39176021--39176070
22
2.3
21
80
10
55
32
10
26
32
1.89
39176064--39176212
44
3.4
45
80
4
128
37
8
18
36
1.80
39176103--39176212
22
5.0
21
74
6
85
35
8
19
37
1.81
39176634--39176666
15
2.2
15
89
10
50
81
0
12
6
0.85
39177252--39177293
3
14.0
3
100
0
84
66
0
0
33
0.92
39198557--39198582
2
13.0
2
100
0
52
0
50
0
50
1.00
39204252--39204288
2
18.5
2
94
0
65
45
0
2
51
1.15
39208944--39208973
2
15.0
2
100
0
60
50
0
0
50
1.00
39221160--39221306
45
3.3
44
82
7
170
36
19
17
27
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39221171--39221334
45
3.6
45
80
3
152
33
18
18
29
1.95
39228799--39228832
15
2.3
15
95
5
61
32
5
20
41
1.76
39233316--39233343
2
14.0
2
100
0
56
50
0
50
0
1.00
39237609--39237662
25
2.2
25
87
9
76
46
3
0
50
1.19
39237637--39237679
15
3.0
14
83
6
50
41
2
0
55
1.12
39237607--39237684
40
1.9
41
84
7
106
44
2
0
52
1.14
39237629--39237671
15
2.9
15
86
3
61
44
2
0
53
1.13
39238196--39238238
17
2.6
16
75
10
50
58
2
34
4
1.32
39252069--39252101
16
2.1
16
100
0
66
6
24
12
57
1.57
39263489--39263526
16
2.4
16
100
0
76
28
31
0
39
1.57
39267783--39267814
16
2.0
16
93
0
55
46
6
6
40
1.54
39273930--39273978
2
24.5
2
100
0
98
48
0
0
51
1.00
39274105--39274143
2
19.5
2
100
0
78
0
48
0
51
1.00
39277183--39277226
18
2.5
17
78
10
52
77
4
11
6
1.11
39277729--39277845
56
2.1
57
82
7
141
21
18
31
28
1.97
39277740--39277919
57
3.2
55
73
11
150
21
18
30
29
1.97
39279263--39279303
21
2.0
21
85
0
55
70
2
4
21
1.18
39281248--39281418
2
86.0
2
74
14
115
47
5
1
43
1.37
39285515--39285552
13
2.9
13
85
14
60
23
0
5
71
1.07
39286217--39286304
2
43.5
2
97
2
167
48
0
0
50
1.00
39286342--39286369
2
14.0
2
100
0
56
50
0
0
50
1.00
39286839--39286890
22
2.3
23
78
15
56
25
7
1
65
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39289456--39289488
16
2.0
16
94
5
57
60
0
6
33
1.21
39290592--39290632
17
2.5
17
88
4
57
26
2
17
53
1.56
39298661--39298706
17
2.8
17
81
15
53
71
2
6
19
1.18
39307544--39307578
2
17.5
2
87
0
52
5
0
45
48
1.26
39317885--39317946
18
3.3
18
75
16
54
56
0
1
41
1.09
39324509--39324552
10
4.0
11
83
16
56
9
18
0
72
1.10
39324509--39324553
23
2.0
23
91
8
74
8
17
0
73
1.08
39325713--39325827
42
2.7
42
85
2
151
19
22
33
25
1.97
39325864--39325928
2
32.0
2
92
3
103
46
0
3
50
1.17
39327999--39328062
10
6.5
10
78
8
60
25
0
12
62
1.30
39327999--39328063
20
3.3
20
78
8
80
24
0
12
63
1.29
39327999--39328144
40
3.7
39
74
16
115
25
1
10
62
1.36
39328489--39328533
21
2.2
20
84
4
54
26
4
11
57
1.52
39328491--39328566
30
2.5
28
77
14
71
34
2
13
50
1.55
39328925--39329171
10
23.9
10
68
19
73
30
4
13
51
1.61
39329019--39329214
10
19.0
10
68
17
73
30
6
12
50
1.65
39329122--39329171
11
4.6
11
76
14
50
30
6
14
50
1.66
39329070--39329170
22
4.8
21
74
11
73
31
3
11
52
1.56
39329122--39329189
32
2.1
34
84
15
90
29
7
11
51
1.65
39329338--39329382
20
2.2
20
84
7
56
28
4
13
53
1.59
39329347--39329420
30
2.5
29
78
10
78
28
2
14
54
1.55
39329491--39329590
10
9.8
10
73
7
76
35
2
12
51
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39329501--39329590
20
4.4
20
74
12
85
35
1
13
50
1.49
39330412--39330537
35
3.7
33
73
10
103
26
11
25
37
1.89
39330409--39330596
67
2.8
67
81
3
209
25
12
24
38
1.90
39340589--39340686
7
13.7
7
76
8
99
15
2
44
37
1.58
39340589--39340669
29
2.8
29
84
0
108
14
1
48
35
1.52
39342638--39342885
7
35.9
7
80
5
200
16
1
48
33
1.54
39342645--39342882
34
6.7
33
74
17
174
17
1
49
31
1.55
39349356--39349632
7
39.7
7
80
7
260
12
0
45
41
1.45
39356395--39356740
7
49.7
7
82
12
329
8
0
44
46
1.33
39356513--39356543
10
2.9
11
90
9
55
9
0
29
61
1.28
39357250--39357404
7
23.3
7
77
11
98
14
0
44
40
1.50
39365144--39365168
11
2.3
11
100
0
50
0
0
16
84
0.63
39365140--39365175
16
2.3
16
90
4
56
0
0
16
83
0.65
39365184--39365286
7
14.7
7
95
0
134
9
0
50
39
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103

The End!